RNA–Protein interactions for RNA: ENST00000472988.5

SMARCD3-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 2

Gene SMARCD3, Length 1,654 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-209ENST00000472988 PMCHL2Q9BQD1 86 aa13.13□□□□□ -0.31
SMARCD3-209ENST00000472988 TMEM262E9PQX1 116 aa13.12□□□□□ -0.31
SMARCD3-209ENST00000472988 SMAGPQ0VAQ4 97 aa13.12□□□□□ -0.31
SMARCD3-209ENST00000472988 ODF1Q14990 250 aa13.12□□□□□ -0.31
SMARCD3-209ENST00000472988 WFDC10BQ8IUB3 73 aa13.12□□□□□ -0.31
SMARCD3-209ENST00000472988 APLNQ9ULZ1 77 aa13.12□□□□□ -0.31
SMARCD3-209ENST00000472988 TRAV12-1A0A0B4J245 112 aa13.12□□□□□ -0.31
SMARCD3-209ENST00000472988 SCGB1D1O95968 90 aa13.12□□□□□ -0.31
SMARCD3-209ENST00000472988 RBX1P62877 108 aa13.12□□□□□ -0.31
SMARCD3-209ENST00000472988 PMVKQ15126 192 aa13.12□□□□□ -0.31
SMARCD3-209ENST00000472988 TMEM101Q96IK0 257 aa13.12□□□□□ -0.31
SMARCD3-209ENST00000472988 AMELXQ99217 191 aa13.12□□□□□ -0.31
SMARCD3-209ENST00000472988 CDC42SE2Q9NRR3 84 aa13.12□□□□□ -0.31
SMARCD3-209ENST00000472988 TRAV8-6A0A0B4J262 113 aa13.11□□□□□ -0.31
SMARCD3-209ENST00000472988 PRSS29PA6NIE9 313 aa13.11□□□□□ -0.31
SMARCD3-209ENST00000472988 LGALS9CQ6DKI2 356 aa13.11□□□□□ -0.31
SMARCD3-209ENST00000472988 VCX2Q9H322 139 aa13.11□□□□□ -0.31
SMARCD3-209ENST00000472988 CST9LQ9H4G1 147 aa13.11□□□□□ -0.31
SMARCD3-209ENST00000472988 KLK5Q9Y337 293 aaPredicted RBP13.11□□□□□ -0.31
SMARCD3-209ENST00000472988 A0A087WX48 190 aa13.1□□□□□ -0.31
SMARCD3-209ENST00000472988 A0A1B0GUV1 79 aa13.1□□□□□ -0.31
SMARCD3-209ENST00000472988 PAPPA-AS1Q5QFB9 102 aa13.1□□□□□ -0.31
SMARCD3-209ENST00000472988 CDPF1Q6NVV7 123 aa13.1□□□□□ -0.31
SMARCD3-209ENST00000472988 TEX43Q6ZNM6 134 aa13.1□□□□□ -0.31
SMARCD3-209ENST00000472988 ZNF664Q8N3J9 261 aa13.1□□□□□ -0.31
SMARCD3-209ENST00000472988 LINC00588Q9Y4M8 146 aa13.1□□□□□ -0.31
SMARCD3-209ENST00000472988 TGP01266 2768 aa13.1□□□□□ -0.31
SMARCD3-209ENST00000472988 ZFAND6Q6FIF0 208 aa13.09□□□□□ -0.31
SMARCD3-209ENST00000472988 C20orf202A1L168 122 aa13.08□□□□□ -0.31
SMARCD3-209ENST00000472988 SMIM6P0DI80 62 aa13.08□□□□□ -0.31
SMARCD3-209ENST00000472988 MRPL35Q9NZE8 188 aaKnown RBP13.08□□□□□ -0.31
SMARCD3-209ENST00000472988 CCL18P55774 89 aa13.08□□□□□ -0.32
SMARCD3-209ENST00000472988 MRPS16Q9Y3D3 137 aaKnown RBP13.08□□□□□ -0.32
SMARCD3-209ENST00000472988 CHTOPQ9Y3Y2 248 aaKnown RBP13.08□□□□□ -0.32
SMARCD3-209ENST00000472988 STARD9Q9P2P6 4700 aa13.08□□□□□ -0.32
SMARCD3-209ENST00000472988 F8VRH5 84 aa13.07□□□□□ -0.32
SMARCD3-209ENST00000472988 PKIAP61925 76 aa13.07□□□□□ -0.32
SMARCD3-209ENST00000472988 ATOH7Q8N100 152 aa13.07□□□□□ -0.32
SMARCD3-209ENST00000472988 MUC7Q8TAX7 377 aa13.07□□□□□ -0.32
SMARCD3-209ENST00000472988 IGLV4-69A0A075B6H9 119 aa13.06□□□□□ -0.32
SMARCD3-209ENST00000472988 WWC2-AS2Q96NR7 200 aa13.06□□□□□ -0.32
SMARCD3-209ENST00000472988 C2orf88Q9BSF0 95 aa13.05□□□□□ -0.32
SMARCD3-209ENST00000472988 IGHV3-30P01768 117 aa13.05□□□□□ -0.32
SMARCD3-209ENST00000472988 IGHV3-33P01772 117 aa13.05□□□□□ -0.32
SMARCD3-209ENST00000472988 IGHV3-30-3P0DP02 117 aa13.05□□□□□ -0.32
SMARCD3-209ENST00000472988 IGHV3-30-5P0DP03 117 aa13.05□□□□□ -0.32
SMARCD3-209ENST00000472988 TCTAP57738 103 aa13.05□□□□□ -0.32
SMARCD3-209ENST00000472988 ANGP03950 147 aaKnown RBP13.03□□□□□ -0.32
SMARCD3-209ENST00000472988 UBE2D1P51668 147 aa13.03□□□□□ -0.32
SMARCD3-209ENST00000472988 CLPSL2Q6UWE3 100 aa13.03□□□□□ -0.32
SMARCD3-209ENST00000472988 UPK3BQ9BT76 320 aa13.03□□□□□ -0.32
SMARCD3-209ENST00000472988 A0A0J9YXV3 536 aa13.02□□□□□ -0.32
SMARCD3-209ENST00000472988 DPM2O94777 84 aa13.02□□□□□ -0.32
SMARCD3-209ENST00000472988 TRAV13-1A0A0B4J241 112 aa13.02□□□□□ -0.33
SMARCD3-209ENST00000472988 IGKV3OR2-268A0A0C4DH90 116 aa13.02□□□□□ -0.33
SMARCD3-209ENST00000472988 C11orf86A6NJI1 115 aa13.02□□□□□ -0.33
SMARCD3-209ENST00000472988 IGKCP01834 107 aa13.02□□□□□ -0.33
SMARCD3-209ENST00000472988 LINC01556Q5JQF7 62 aa13.02□□□□□ -0.33
SMARCD3-209ENST00000472988 LINC00269Q8N2A0 174 aa13.02□□□□□ -0.33
SMARCD3-209ENST00000472988 DNAH10OSP0CZ25 163 aa13.01□□□□□ -0.33
SMARCD3-209ENST00000472988 IGLC3P0DOY3 106 aa13.01□□□□□ -0.33
SMARCD3-209ENST00000472988 PLNP26678 52 aa13.01□□□□□ -0.33
SMARCD3-209ENST00000472988 CHAC1Q9BUX1 264 aa13.01□□□□□ -0.33
SMARCD3-209ENST00000472988 PLECQ15149 4684 aaKnown RBP13.01□□□□□ -0.33
SMARCD3-209ENST00000472988 MAJINQ3KP22 176 aa13□□□□□ -0.33
SMARCD3-209ENST00000472988 NFE4Q86UQ8 179 aa13□□□□□ -0.33
SMARCD3-209ENST00000472988 KLK12Q9UKR0 248 aa13□□□□□ -0.33
SMARCD3-209ENST00000472988 SIVA1O15304 175 aa12.99□□□□□ -0.33
SMARCD3-209ENST00000472988 LINC00518Q8N0U6 118 aa12.99□□□□□ -0.33
SMARCD3-209ENST00000472988 C12orf57Q99622 126 aa12.99□□□□□ -0.33
SMARCD3-209ENST00000472988 hDV102S1A0JD36 115 aa12.99□□□□□ -0.33
SMARCD3-209ENST00000472988 REG3AQ06141 175 aa12.99□□□□□ -0.33
SMARCD3-209ENST00000472988 LINC00242Q5T6M2 205 aa12.99□□□□□ -0.33
SMARCD3-209ENST00000472988 FAM19A3Q7Z5A8 133 aa12.99□□□□□ -0.33
SMARCD3-209ENST00000472988 UBE2DNLQ8IWF7 75 aa12.99□□□□□ -0.33
SMARCD3-209ENST00000472988 LYSTQ99698 3801 aa12.98□□□□□ -0.33
SMARCD3-209ENST00000472988 LINC00959A0A1B0GUT2 108 aa12.98□□□□□ -0.33
SMARCD3-209ENST00000472988 PRR34Q9NV39 138 aa12.98□□□□□ -0.33
SMARCD3-209ENST00000472988 TENM2Q9NT68 2774 aa12.97□□□□□ -0.33
SMARCD3-209ENST00000472988 TINCRA0A1B0GVN0 87 aa12.97□□□□□ -0.33
SMARCD3-209ENST00000472988 COX6A2Q02221 97 aa12.96□□□□□ -0.33
SMARCD3-209ENST00000472988 TRAV9-2A0A087WT02 112 aa12.96□□□□□ -0.34
SMARCD3-209ENST00000472988 ZNF22P17026 224 aaPredicted RBP12.96□□□□□ -0.34
SMARCD3-209ENST00000472988 ENHOQ6UWT2 76 aa12.96□□□□□ -0.34
SMARCD3-209ENST00000472988 VAMP8Q9BV40 100 aa12.96□□□□□ -0.34
SMARCD3-209ENST00000472988 STPG4Q8N801 248 aa12.95□□□□□ -0.34
SMARCD3-209ENST00000472988 Q9H8V8 135 aa12.95□□□□□ -0.34
SMARCD3-209ENST00000472988 PAM16Q9Y3D7 125 aa12.95□□□□□ -0.34
SMARCD3-209ENST00000472988 TMEM170BQ5T4T1 132 aa12.94□□□□□ -0.34
SMARCD3-209ENST00000472988 GEMIN7Q9H840 131 aaKnown RBP12.94□□□□□ -0.34
SMARCD3-209ENST00000472988 IGLV5-45A0A087WSX0 123 aa12.93□□□□□ -0.34
SMARCD3-209ENST00000472988 UBE2WQ96B02 151 aa12.93□□□□□ -0.34
SMARCD3-209ENST00000472988 IGLV10-54A0A075B6I4 117 aa12.93□□□□□ -0.34
SMARCD3-209ENST00000472988 CRPP02741 224 aa12.93□□□□□ -0.34
SMARCD3-209ENST00000472988 HERVK_113P63121 156 aa12.93□□□□□ -0.34
SMARCD3-209ENST00000472988 SEC11AP67812 179 aa12.93□□□□□ -0.34
SMARCD3-209ENST00000472988 SS18Q15532 418 aa12.93□□□□□ -0.34
SMARCD3-209ENST00000472988 ANKRD39Q53RE8 183 aa12.93□□□□□ -0.34
SMARCD3-209ENST00000472988 CASC10Q5T4H9 136 aa12.93□□□□□ -0.34
SMARCD3-209ENST00000472988 CDKN2A-AS1Q9UH64 79 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms