RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 RBX1P62877 108 aa8.57□□□□□ -1.04
NPHP4-204ENST00000460696 ZANQ9Y493 2812 aa8.57□□□□□ -1.04
NPHP4-204ENST00000460696 ZNF22P17026 224 aaPredicted RBP8.57□□□□□ -1.04
NPHP4-204ENST00000460696 DNAJC30Q96LL9 226 aa8.56□□□□□ -1.04
NPHP4-204ENST00000460696 K7EQD1 137 aa8.56□□□□□ -1.04
NPHP4-204ENST00000460696 NDUFA11Q86Y39 141 aa8.56□□□□□ -1.04
NPHP4-204ENST00000460696 NTN5Q8WTR8 489 aaPredicted RBP8.56□□□□□ -1.04
NPHP4-204ENST00000460696 LINC00467Q9BRT7 94 aa8.56□□□□□ -1.04
NPHP4-204ENST00000460696 ESM1Q9NQ30 184 aa8.56□□□□□ -1.04
NPHP4-204ENST00000460696 C5orf38Q86SI9 138 aa8.56□□□□□ -1.04
NPHP4-204ENST00000460696 ZMAT4Q9H898 229 aa8.56□□□□□ -1.04
NPHP4-204ENST00000460696 TRBV6-5A0A0K0K1A5 114 aa8.55□□□□□ -1.04
NPHP4-204ENST00000460696 A8MZ25 164 aa8.55□□□□□ -1.04
NPHP4-204ENST00000460696 TSPAN13O95857 204 aa8.55□□□□□ -1.04
NPHP4-204ENST00000460696 TSHBP01222 138 aa8.55□□□□□ -1.04
NPHP4-204ENST00000460696 CYSRT1A8MQ03 144 aa8.55□□□□□ -1.04
NPHP4-204ENST00000460696 IGIPA6NJ69 53 aa8.55□□□□□ -1.04
NPHP4-204ENST00000460696 CFAP126Q5VTH2 177 aa8.55□□□□□ -1.04
NPHP4-204ENST00000460696 TMEM86BQ8N661 226 aa8.54□□□□□ -1.04
NPHP4-204ENST00000460696 SLC25A29Q8N8R3 303 aa8.54□□□□□ -1.04
NPHP4-204ENST00000460696 WFDC10AQ9H1F0 79 aa8.54□□□□□ -1.04
NPHP4-204ENST00000460696 CDKN2A-AS1Q9UH64 79 aa8.54□□□□□ -1.04
NPHP4-204ENST00000460696 TRAV25A0A0B4J276 109 aa8.54□□□□□ -1.04
NPHP4-204ENST00000460696 IGHV1-58A0A0C4DH39 117 aa8.54□□□□□ -1.04
NPHP4-204ENST00000460696 F5H768 121 aa8.54□□□□□ -1.04
NPHP4-204ENST00000460696 G3V4G9 280 aa8.54□□□□□ -1.04
NPHP4-204ENST00000460696 NXPH4O95158 308 aa8.54□□□□□ -1.04
NPHP4-204ENST00000460696 RBMY1BA6NDE4 496 aaKnown RBP8.54□□□□□ -1.04
NPHP4-204ENST00000460696 RBMY1EA6NEQ0 496 aaKnown RBP8.54□□□□□ -1.04
NPHP4-204ENST00000460696 RBMY1DP0C7P1 496 aaKnown RBP8.54□□□□□ -1.04
NPHP4-204ENST00000460696 RBMY1A1P0DJD3 496 aaKnown RBP8.54□□□□□ -1.04
NPHP4-204ENST00000460696 RBMY1CP0DJD4 496 aa8.54□□□□□ -1.04
NPHP4-204ENST00000460696 SS18Q15532 418 aa8.54□□□□□ -1.04
NPHP4-204ENST00000460696 VSIG2Q96IQ7 327 aa8.54□□□□□ -1.04
NPHP4-204ENST00000460696 NSD1Q96L73 2696 aaPredicted RBP8.53□□□□□ -1.04
NPHP4-204ENST00000460696 A0A0J9YXY3 114 aa8.53□□□□□ -1.04
NPHP4-204ENST00000460696 XCL1P47992 114 aa8.53□□□□□ -1.04
NPHP4-204ENST00000460696 GAGE2BQ13066 116 aa8.53□□□□□ -1.04
NPHP4-204ENST00000460696 GAGE2EQ4V326 116 aa8.53□□□□□ -1.04
NPHP4-204ENST00000460696 LINC01006Q8NI28 216 aa8.53□□□□□ -1.04
NPHP4-204ENST00000460696 GAGE2DQ9UEU5 116 aa8.53□□□□□ -1.04
NPHP4-204ENST00000460696 APCP25054 2843 aa8.53□□□□□ -1.04
NPHP4-204ENST00000460696 DEFB4AO15263 64 aa8.53□□□□□ -1.04
NPHP4-204ENST00000460696 BRI3O95415 125 aa8.53□□□□□ -1.04
NPHP4-204ENST00000460696 TMEM263Q8WUH6 116 aaKnown RBP8.53□□□□□ -1.04
NPHP4-204ENST00000460696 TMEM223A0PJW6 202 aa8.52□□□□□ -1.05
NPHP4-204ENST00000460696 DAD1P61803 113 aa8.52□□□□□ -1.05
NPHP4-204ENST00000460696 DAZ2Q13117 558 aaKnown RBP8.52□□□□□ -1.05
NPHP4-204ENST00000460696 DAZ4Q86SG3 579 aaKnown RBP8.52□□□□□ -1.05
NPHP4-204ENST00000460696 C16orf74Q96GX8 76 aa8.52□□□□□ -1.05
NPHP4-204ENST00000460696 DAZ3Q9NR90 486 aaKnown RBP8.52□□□□□ -1.05
NPHP4-204ENST00000460696 PRSS47A8MTI9 375 aa8.52□□□□□ -1.05
NPHP4-204ENST00000460696 HILS1P60008 231 aa8.52□□□□□ -1.05
NPHP4-204ENST00000460696 OXLD1Q5BKU9 147 aa8.52□□□□□ -1.05
NPHP4-204ENST00000460696 TCL1BO95988 128 aa8.52□□□□□ -1.05
NPHP4-204ENST00000460696 RPL32P62910 135 aaKnown RBP8.52□□□□□ -1.05
NPHP4-204ENST00000460696 UBE2WQ96B02 151 aa8.52□□□□□ -1.05
NPHP4-204ENST00000460696 CARD19Q96LW7 228 aa8.52□□□□□ -1.05
NPHP4-204ENST00000460696 GYPEP15421 78 aa8.51□□□□□ -1.05
NPHP4-204ENST00000460696 NFE4Q86UQ8 179 aa8.51□□□□□ -1.05
NPHP4-204ENST00000460696 ANAPC13Q9BS18 74 aa8.51□□□□□ -1.05
NPHP4-204ENST00000460696 ZFAND6Q6FIF0 208 aa8.5□□□□□ -1.05
NPHP4-204ENST00000460696 ANGP03950 147 aaKnown RBP8.5□□□□□ -1.05
NPHP4-204ENST00000460696 TEN1Q86WV5 123 aa8.5□□□□□ -1.05
NPHP4-204ENST00000460696 KIF25-AS1Q9Y6Z4 181 aa8.5□□□□□ -1.05
NPHP4-204ENST00000460696 ODF3L2Q3SX64 289 aa8.5□□□□□ -1.05
NPHP4-204ENST00000460696 FOXI1Q12951 378 aa8.49□□□□□ -1.05
NPHP4-204ENST00000460696 ANKRD29Q8N6D5 301 aa8.49□□□□□ -1.05
NPHP4-204ENST00000460696 IGLV4-69A0A075B6H9 119 aa8.49□□□□□ -1.05
NPHP4-204ENST00000460696 IGLV10-54A0A075B6I4 117 aa8.49□□□□□ -1.05
NPHP4-204ENST00000460696 LINC01620Q4KN68 170 aa8.49□□□□□ -1.05
NPHP4-204ENST00000460696 TSPEAR-AS2P59090 65 aa8.49□□□□□ -1.05
NPHP4-204ENST00000460696 CLEC2BQ92478 149 aa8.49□□□□□ -1.05
NPHP4-204ENST00000460696 ZNF580Q9UK33 172 aa8.49□□□□□ -1.05
NPHP4-204ENST00000460696 ICOSQ9Y6W8 199 aa8.49□□□□□ -1.05
NPHP4-204ENST00000460696 ZFHX4Q86UP3 3567 aa8.49□□□□□ -1.05
NPHP4-204ENST00000460696 MUC4Q99102 2169 aa8.49□□□□□ -1.05
NPHP4-204ENST00000460696 S100A7L2Q5SY68 101 aa8.48□□□□□ -1.05
NPHP4-204ENST00000460696 UFSP1Q6NVU6 142 aa8.48□□□□□ -1.05
NPHP4-204ENST00000460696 TRBV10-1A0A0K0K1A3 114 aa8.48□□□□□ -1.05
NPHP4-204ENST00000460696 ATP6V0E2Q8NHE4 81 aa8.48□□□□□ -1.05
NPHP4-204ENST00000460696 TINCRA0A1B0GVN0 87 aa8.48□□□□□ -1.05
NPHP4-204ENST00000460696 IGHV3-30P01768 117 aa8.48□□□□□ -1.05
NPHP4-204ENST00000460696 IGHV3-30-5P0DP03 117 aa8.48□□□□□ -1.05
NPHP4-204ENST00000460696 LINC00315P59091 139 aa8.48□□□□□ -1.05
NPHP4-204ENST00000460696 DEFB135Q30KP9 77 aa8.48□□□□□ -1.05
NPHP4-204ENST00000460696 SPANXB1Q9NS25 103 aaPredicted RBP8.48□□□□□ -1.05
NPHP4-204ENST00000460696 TRAV4A0A0B4J268 109 aa8.47□□□□□ -1.05
NPHP4-204ENST00000460696 IFITM1P13164 125 aa8.47□□□□□ -1.05
NPHP4-204ENST00000460696 ASH1LQ9NR48 2969 aaKnown RBP8.47□□□□□ -1.05
NPHP4-204ENST00000460696 RBMY1FQ15415 496 aaKnown RBP8.46□□□□□ -1.06
NPHP4-204ENST00000460696 SHISA2Q6UWI4 295 aa8.46□□□□□ -1.06
NPHP4-204ENST00000460696 Q6ZSN1 163 aa8.46□□□□□ -1.06
NPHP4-204ENST00000460696 FAM19A4Q96LR4 140 aa8.46□□□□□ -1.06
NPHP4-204ENST00000460696 PYGO1Q9Y3Y4 419 aa8.46□□□□□ -1.06
NPHP4-204ENST00000460696 RS1O15537 224 aa8.46□□□□□ -1.06
NPHP4-204ENST00000460696 NDUFA7O95182 113 aa8.46□□□□□ -1.06
NPHP4-204ENST00000460696 LOC100131303A0A0U1RQF7 123 aa8.45□□□□□ -1.06
NPHP4-204ENST00000460696 SCGB1A1P11684 91 aa8.45□□□□□ -1.06
NPHP4-204ENST00000460696 INSL3P51460 131 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms