RNA–Protein interactions for RNA: ENST00000447873.5

SGCE-207, Transcript of sarcoglycan epsilon, humanhuman

TSL 1 (best) BASIC

Gene SGCE, Length 1,597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCE-207ENST00000447873 UPK3BQ9BT76 320 aa13.33□□□□□ -0.28
SGCE-207ENST00000447873 IGLV4-3A0A075B6K6 122 aa13.32□□□□□ -0.28
SGCE-207ENST00000447873 NPSP0C0P6 89 aa13.32□□□□□ -0.28
SGCE-207ENST00000447873 PAPPA-AS1Q5QFB9 102 aa13.32□□□□□ -0.28
SGCE-207ENST00000447873 IGLV4-60A0A075B6I1 120 aa13.32□□□□□ -0.28
SGCE-207ENST00000447873 MRPS36P82909 103 aaKnown RBP13.32□□□□□ -0.28
SGCE-207ENST00000447873 ZNF664Q8N3J9 261 aa13.32□□□□□ -0.28
SGCE-207ENST00000447873 Q8N3U1 123 aa13.32□□□□□ -0.28
SGCE-207ENST00000447873 MAP1LC3CQ9BXW4 147 aa13.32□□□□□ -0.28
SGCE-207ENST00000447873 CDC42SE2Q9NRR3 84 aa13.32□□□□□ -0.28
SGCE-207ENST00000447873 SIVA1O15304 175 aa13.31□□□□□ -0.28
SGCE-207ENST00000447873 IGHV3-30P01768 117 aa13.31□□□□□ -0.28
SGCE-207ENST00000447873 IGHV3-33P01772 117 aa13.31□□□□□ -0.28
SGCE-207ENST00000447873 PRSS1P07477 247 aa13.31□□□□□ -0.28
SGCE-207ENST00000447873 IGHV3-30-3P0DP02 117 aa13.31□□□□□ -0.28
SGCE-207ENST00000447873 IGHV3-30-5P0DP03 117 aa13.31□□□□□ -0.28
SGCE-207ENST00000447873 Q6ZUT4 128 aa13.31□□□□□ -0.28
SGCE-207ENST00000447873 LYSTQ99698 3801 aa13.31□□□□□ -0.28
SGCE-207ENST00000447873 RNASE13Q5GAN3 156 aaKnown RBP13.3□□□□□ -0.28
SGCE-207ENST00000447873 BAALCQ8WXS3 180 aa13.3□□□□□ -0.28
SGCE-207ENST00000447873 FAM104AQ969W3 186 aa13.3□□□□□ -0.28
SGCE-207ENST00000447873 VCX2Q9H322 139 aa13.3□□□□□ -0.28
SGCE-207ENST00000447873 H0Y8G0 127 aa13.29□□□□□ -0.28
SGCE-207ENST00000447873 ANGP03950 147 aaKnown RBP13.29□□□□□ -0.28
SGCE-207ENST00000447873 KRTDAPP60985 99 aa13.29□□□□□ -0.28
SGCE-207ENST00000447873 LINC01556Q5JQF7 62 aa13.29□□□□□ -0.28
SGCE-207ENST00000447873 TEX43Q6ZNM6 134 aa13.29□□□□□ -0.28
SGCE-207ENST00000447873 DNAH10OSP0CZ25 163 aa13.28□□□□□ -0.28
SGCE-207ENST00000447873 OR10D4PQ8NGN7 298 aa13.28□□□□□ -0.28
SGCE-207ENST00000447873 Q9H8V8 135 aa13.28□□□□□ -0.28
SGCE-207ENST00000447873 C3orf79P0CE67 100 aa13.28□□□□□ -0.28
SGCE-207ENST00000447873 ZC2HC1BQ5TFG8 222 aa13.28□□□□□ -0.28
SGCE-207ENST00000447873 SYS1-DBNDD2H3BUS1 97 aa13.27□□□□□ -0.29
SGCE-207ENST00000447873 PMVKQ15126 192 aa13.27□□□□□ -0.29
SGCE-207ENST00000447873 AMELXQ99217 191 aa13.27□□□□□ -0.29
SGCE-207ENST00000447873 C2orf88Q9BSF0 95 aa13.26□□□□□ -0.29
SGCE-207ENST00000447873 KLK12Q9UKR0 248 aa13.26□□□□□ -0.29
SGCE-207ENST00000447873 LINC00269Q8N2A0 174 aa13.25□□□□□ -0.29
SGCE-207ENST00000447873 CST9LQ9H4G1 147 aa13.25□□□□□ -0.29
SGCE-207ENST00000447873 IGKV3OR2-268A0A0C4DH90 116 aa13.24□□□□□ -0.29
SGCE-207ENST00000447873 PRSS29PA6NIE9 313 aa13.24□□□□□ -0.29
SGCE-207ENST00000447873 LGALS9CQ6DKI2 356 aa13.24□□□□□ -0.29
SGCE-207ENST00000447873 TRAV12-1A0A0B4J245 112 aa13.24□□□□□ -0.29
SGCE-207ENST00000447873 CLPSL2Q6UWE3 100 aa13.24□□□□□ -0.29
SGCE-207ENST00000447873 REG3AQ06141 175 aa13.23□□□□□ -0.29
SGCE-207ENST00000447873 PET117Q6UWS5 81 aa13.23□□□□□ -0.29
SGCE-207ENST00000447873 SPATA12Q7Z6I5 190 aa13.23□□□□□ -0.29
SGCE-207ENST00000447873 TRAV9-2A0A087WT02 112 aa13.22□□□□□ -0.29
SGCE-207ENST00000447873 TRAV13-1A0A0B4J241 112 aa13.22□□□□□ -0.29
SGCE-207ENST00000447873 VPS13DQ5THJ4 4388 aa13.22□□□□□ -0.29
SGCE-207ENST00000447873 CRPP02741 224 aa13.21□□□□□ -0.29
SGCE-207ENST00000447873 AKR1D1P51857 326 aa13.21□□□□□ -0.29
SGCE-207ENST00000447873 C10orf126Q8N4M7 172 aa13.21□□□□□ -0.29
SGCE-207ENST00000447873 CHTOPQ9Y3Y2 248 aaKnown RBP13.21□□□□□ -0.29
SGCE-207ENST00000447873 K7EP13 123 aa13.2□□□□□ -0.3
SGCE-207ENST00000447873 ODF1Q14990 250 aa13.2□□□□□ -0.3
SGCE-207ENST00000447873 PRR34Q9NV39 138 aa13.2□□□□□ -0.3
SGCE-207ENST00000447873 DNAH1Q9P2D7 4330 aa13.2□□□□□ -0.3
SGCE-207ENST00000447873 LOC105371267A0A1B0GV96 52 aa13.2□□□□□ -0.3
SGCE-207ENST00000447873 C20orf202A1L168 122 aa13.2□□□□□ -0.3
SGCE-207ENST00000447873 LY6G6CO95867 125 aa13.2□□□□□ -0.3
SGCE-207ENST00000447873 UBE2WQ96B02 151 aa13.2□□□□□ -0.3
SGCE-207ENST00000447873 UBE2D1P51668 147 aa13.19□□□□□ -0.3
SGCE-207ENST00000447873 ENHOQ6UWT2 76 aa13.19□□□□□ -0.3
SGCE-207ENST00000447873 PMCHL2Q9BQD1 86 aa13.19□□□□□ -0.3
SGCE-207ENST00000447873 MRPL35Q9NZE8 188 aaKnown RBP13.19□□□□□ -0.3
SGCE-207ENST00000447873 LINC00959A0A1B0GUT2 108 aa13.18□□□□□ -0.3
SGCE-207ENST00000447873 F8VRH5 84 aa13.18□□□□□ -0.3
SGCE-207ENST00000447873 LINC01545Q5VT33 79 aa13.18□□□□□ -0.3
SGCE-207ENST00000447873 A0A0J9YXV3 536 aa13.17□□□□□ -0.3
SGCE-207ENST00000447873 IBA57-AS1B1ANH7 110 aa13.17□□□□□ -0.3
SGCE-207ENST00000447873 SCGB1D1O95968 90 aa13.17□□□□□ -0.3
SGCE-207ENST00000447873 SS18Q15532 418 aa13.17□□□□□ -0.3
SGCE-207ENST00000447873 LINC00476Q8WZB0 136 aa13.17□□□□□ -0.3
SGCE-207ENST00000447873 CCL25O15444 150 aa13.15□□□□□ -0.3
SGCE-207ENST00000447873 SEC11AP67812 179 aa13.15□□□□□ -0.3
SGCE-207ENST00000447873 MIAQ16674 131 aa13.15□□□□□ -0.3
SGCE-207ENST00000447873 IGLV4-69A0A075B6H9 119 aa13.15□□□□□ -0.3
SGCE-207ENST00000447873 IGLV10-54A0A075B6I4 117 aa13.15□□□□□ -0.3
SGCE-207ENST00000447873 TTC32Q5I0X7 151 aa13.15□□□□□ -0.3
SGCE-207ENST00000447873 LINC00242Q5T6M2 205 aa13.15□□□□□ -0.3
SGCE-207ENST00000447873 GEMIN7Q9H840 131 aaKnown RBP13.15□□□□□ -0.3
SGCE-207ENST00000447873 ALMS1Q8TCU4 4167 aa13.14□□□□□ -0.31
SGCE-207ENST00000447873 TRAV8-3A0A0A6YYJ7 113 aa13.14□□□□□ -0.31
SGCE-207ENST00000447873 TRAV8-4A0A0B4J246 113 aa13.14□□□□□ -0.31
SGCE-207ENST00000447873 NBDYA0A0U1RRE5 68 aa13.14□□□□□ -0.31
SGCE-207ENST00000447873 TINCRA0A1B0GVN0 87 aa13.14□□□□□ -0.31
SGCE-207ENST00000447873 DPM2O94777 84 aa13.14□□□□□ -0.31
SGCE-207ENST00000447873 IGLC3P0DOY3 106 aa13.14□□□□□ -0.31
SGCE-207ENST00000447873 PLNP26678 52 aa13.14□□□□□ -0.31
SGCE-207ENST00000447873 JOSD1Q15040 202 aaPredicted RBP13.14□□□□□ -0.31
SGCE-207ENST00000447873 FAM19A3Q7Z5A8 133 aa13.14□□□□□ -0.31
SGCE-207ENST00000447873 CHAC1Q9BUX1 264 aa13.14□□□□□ -0.31
SGCE-207ENST00000447873 Q9HAA7 133 aa13.14□□□□□ -0.31
SGCE-207ENST00000447873 IGKCP01834 107 aa13.13□□□□□ -0.31
SGCE-207ENST00000447873 XCL1P47992 114 aa13.13□□□□□ -0.31
SGCE-207ENST00000447873 KRTAP1-5Q9BYS1 174 aa13.13□□□□□ -0.31
SGCE-207ENST00000447873 HERVK_113P63121 156 aa13.12□□□□□ -0.31
SGCE-207ENST00000447873 CHCHD10Q8WYQ3 142 aaPredicted RBP13.12□□□□□ -0.31
SGCE-207ENST00000447873 C11orf86A6NJI1 115 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms