RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 ZNF720Q7Z2F6 126 aa1.35□□□□□ -2.19
CCDC88A-208ENST00000444458 MANBALQ9NQG1 85 aa1.35□□□□□ -2.19
CCDC88A-208ENST00000444458 PRO2289Q9P1D8 64 aa1.35□□□□□ -2.19
CCDC88A-208ENST00000444458 TEX15Q9BXT5 2789 aa1.35□□□□□ -2.19
CCDC88A-208ENST00000444458 TRAV23DV6A0A075B6W5 121 aa1.35□□□□□ -2.19
CCDC88A-208ENST00000444458 RNASE2P10153 161 aaKnown RBP1.35□□□□□ -2.19
CCDC88A-208ENST00000444458 LINC00167Q96N53 147 aa1.35□□□□□ -2.19
CCDC88A-208ENST00000444458 A0A0G2JQZ4 141 aa1.35□□□□□ -2.19
CCDC88A-208ENST00000444458 hADV29S1A0JD25 119 aa1.35□□□□□ -2.19
CCDC88A-208ENST00000444458 IGFBP7Q16270 282 aa1.35□□□□□ -2.19
CCDC88A-208ENST00000444458 LYPD5Q6UWN5 251 aa1.35□□□□□ -2.19
CCDC88A-208ENST00000444458 MRPL36Q9P0J6 103 aaKnown RBP1.35□□□□□ -2.19
CCDC88A-208ENST00000444458 ZNF292O60281 2723 aa1.35□□□□□ -2.19
CCDC88A-208ENST00000444458 NINQ8N4C6 2090 aa1.35□□□□□ -2.19
CCDC88A-208ENST00000444458 ATG2AQ2TAZ0 1938 aa1.35□□□□□ -2.19
CCDC88A-208ENST00000444458 DLG5Q8TDM6 1919 aa1.35□□□□□ -2.19
CCDC88A-208ENST00000444458 PTPRBP23467 1997 aa1.35□□□□□ -2.19
CCDC88A-208ENST00000444458 SDHAF1A6NFY7 115 aa1.35□□□□□ -2.19
CCDC88A-208ENST00000444458 H3BRN7 92 aa1.35□□□□□ -2.19
CCDC88A-208ENST00000444458 KRTAP10-9P60411 292 aa1.35□□□□□ -2.19
CCDC88A-208ENST00000444458 MOBPQ13875 183 aa1.35□□□□□ -2.19
CCDC88A-208ENST00000444458 C10orf128Q5T292 105 aa1.35□□□□□ -2.19
CCDC88A-208ENST00000444458 PRR9Q5T870 116 aa1.35□□□□□ -2.19
CCDC88A-208ENST00000444458 C15orf53Q8NAA6 179 aa1.35□□□□□ -2.19
CCDC88A-208ENST00000444458 S100A16Q96FQ6 103 aaKnown RBP1.35□□□□□ -2.19
CCDC88A-208ENST00000444458 LINC00312Q9Y6C7 94 aa1.35□□□□□ -2.19
CCDC88A-208ENST00000444458 COL4A6Q14031 1691 aa1.34□□□□□ -2.19
CCDC88A-208ENST00000444458 VWFP04275 2813 aa1.34□□□□□ -2.19
CCDC88A-208ENST00000444458 CYP2G1PQ6ZSU1 146 aa1.34□□□□□ -2.19
CCDC88A-208ENST00000444458 C9orf163Q8N9P6 203 aa1.34□□□□□ -2.19
CCDC88A-208ENST00000444458 LINC00052Q96N35 136 aa1.34□□□□□ -2.19
CCDC88A-208ENST00000444458 TRGV4A0A0C4DH28 118 aa1.34□□□□□ -2.19
CCDC88A-208ENST00000444458 PIN1P1O15428 100 aa1.34□□□□□ -2.19
CCDC88A-208ENST00000444458 CCL16O15467 120 aa1.34□□□□□ -2.19
CCDC88A-208ENST00000444458 PPYP01298 95 aa1.34□□□□□ -2.19
CCDC88A-208ENST00000444458 LINC00315P59091 139 aa1.34□□□□□ -2.19
CCDC88A-208ENST00000444458 KRTAP11-1Q8IUC1 163 aa1.34□□□□□ -2.19
CCDC88A-208ENST00000444458 NPVFQ9HCQ7 196 aa1.34□□□□□ -2.19
CCDC88A-208ENST00000444458 CDC42SE1Q9NRR8 79 aa1.34□□□□□ -2.19
CCDC88A-208ENST00000444458 ARHGAP32A7KAX9 2087 aa1.34□□□□□ -2.2
CCDC88A-208ENST00000444458 COL1A2P08123 1366 aa1.34□□□□□ -2.2
CCDC88A-208ENST00000444458 TRAV12-3A0A0B4J271 114 aa1.34□□□□□ -2.2
CCDC88A-208ENST00000444458 TRBV10-1A0A0K0K1A3 114 aa1.34□□□□□ -2.2
CCDC88A-208ENST00000444458 HCG22E2RYF7 251 aa1.34□□□□□ -2.2
CCDC88A-208ENST00000444458 CCKP06307 115 aa1.34□□□□□ -2.2
CCDC88A-208ENST00000444458 Q0VG73 95 aa1.34□□□□□ -2.2
CCDC88A-208ENST00000444458 PDE6HQ13956 83 aa1.34□□□□□ -2.2
CCDC88A-208ENST00000444458 ADIRFQ15847 76 aa1.34□□□□□ -2.2
CCDC88A-208ENST00000444458 Q1T7F1 81 aa1.34□□□□□ -2.2
CCDC88A-208ENST00000444458 IFI27L1Q96BM0 104 aa1.34□□□□□ -2.2
CCDC88A-208ENST00000444458 SNRNP200O75643 2136 aaKnown RBP1.33□□□□□ -2.2
CCDC88A-208ENST00000444458 HEATR1Q9H583 2144 aaKnown RBP1.33□□□□□ -2.2
CCDC88A-208ENST00000444458 K7EP34 96 aa1.33□□□□□ -2.2
CCDC88A-208ENST00000444458 CCL8P80075 99 aa1.33□□□□□ -2.2
CCDC88A-208ENST00000444458 MICAL3Q7RTP6 2002 aa1.33□□□□□ -2.2
CCDC88A-208ENST00000444458 C10orf82Q8WW14 230 aa1.33□□□□□ -2.2
CCDC88A-208ENST00000444458 ACACAQ13085 2346 aa1.33□□□□□ -2.2
CCDC88A-208ENST00000444458 TMEM14CQ9P0S9 112 aa1.33□□□□□ -2.2
CCDC88A-208ENST00000444458 UQCR10Q9UDW1 63 aa1.33□□□□□ -2.2
CCDC88A-208ENST00000444458 SYNE2Q8WXH0 6885 aaKnown RBP1.33□□□□□ -2.2
CCDC88A-208ENST00000444458 TNRC6AQ8NDV7 1962 aaKnown RBP1.33□□□□□ -2.2
CCDC88A-208ENST00000444458 A0A1W2PNN7 141 aa1.33□□□□□ -2.2
CCDC88A-208ENST00000444458 LRCOL1A6NCL2 159 aa1.33□□□□□ -2.2
CCDC88A-208ENST00000444458 TRAPPC2P0DI81 140 aa1.33□□□□□ -2.2
CCDC88A-208ENST00000444458 TRAPPC2BP0DI82 140 aa1.33□□□□□ -2.2
CCDC88A-208ENST00000444458 COX6B1P14854 86 aa1.33□□□□□ -2.2
CCDC88A-208ENST00000444458 KRTAP10-11P60412 298 aa1.33□□□□□ -2.2
CCDC88A-208ENST00000444458 LINC00299Q6ZSB3 139 aa1.33□□□□□ -2.2
CCDC88A-208ENST00000444458 TVP23CQ96ET8 276 aa1.33□□□□□ -2.2
CCDC88A-208ENST00000444458 DMAC1Q96GE9 116 aa1.33□□□□□ -2.2
CCDC88A-208ENST00000444458 CYP4F30PQ9H0H9 118 aa1.33□□□□□ -2.2
CCDC88A-208ENST00000444458 WFDC10AQ9H1F0 79 aa1.33□□□□□ -2.2
CCDC88A-208ENST00000444458 NSD1Q96L73 2696 aaPredicted RBP1.33□□□□□ -2.2
CCDC88A-208ENST00000444458 ANKRD36CQ5JPF3 1778 aa1.33□□□□□ -2.2
CCDC88A-208ENST00000444458 RYR1P21817 5038 aa1.33□□□□□ -2.2
CCDC88A-208ENST00000444458 CPAMD8Q8IZJ3 1885 aa1.33□□□□□ -2.2
CCDC88A-208ENST00000444458 SFT2D2O95562 160 aa1.32□□□□□ -2.2
CCDC88A-208ENST00000444458 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP1.32□□□□□ -2.2
CCDC88A-208ENST00000444458 MYOFQ9NZM1 2061 aa1.32□□□□□ -2.2
CCDC88A-208ENST00000444458 KIAA1549Q9HCM3 1950 aa1.32□□□□□ -2.2
CCDC88A-208ENST00000444458 CNTRLQ7Z7A1 2325 aa1.32□□□□□ -2.2
CCDC88A-208ENST00000444458 NDUFC1O43677 76 aa1.32□□□□□ -2.2
CCDC88A-208ENST00000444458 CSAG1Q6PB30 78 aa1.32□□□□□ -2.2
CCDC88A-208ENST00000444458 NXT2Q9NPJ8 142 aaKnown RBP1.32□□□□□ -2.2
CCDC88A-208ENST00000444458 SPAG17Q6Q759 2223 aa1.32□□□□□ -2.2
CCDC88A-208ENST00000444458 MED12LQ86YW9 2145 aa1.32□□□□□ -2.2
CCDC88A-208ENST00000444458 LOC730098B7Z3J9 87 aa1.32□□□□□ -2.2
CCDC88A-208ENST00000444458 JMJD7-PLA2G4BH0Y9G9 81 aa1.32□□□□□ -2.2
CCDC88A-208ENST00000444458 SMIM11AP58511 58 aa1.32□□□□□ -2.2
CCDC88A-208ENST00000444458 TXNDC17Q9BRA2 123 aa1.32□□□□□ -2.2
CCDC88A-208ENST00000444458 LIMD2Q9BT23 127 aa1.32□□□□□ -2.2
CCDC88A-208ENST00000444458 LRRC37AA6NMS7 1700 aa1.32□□□□□ -2.2
CCDC88A-208ENST00000444458 IGHV3-33P01772 117 aa1.32□□□□□ -2.2
CCDC88A-208ENST00000444458 APOC3P02656 99 aa1.32□□□□□ -2.2
CCDC88A-208ENST00000444458 REG4Q9BYZ8 158 aa1.32□□□□□ -2.2
CCDC88A-208ENST00000444458 RABAC1Q9UI14 185 aa1.32□□□□□ -2.2
CCDC88A-208ENST00000444458 SHANK1Q9Y566 2161 aa1.31□□□□□ -2.2
CCDC88A-208ENST00000444458 TRBV6-4A0A1B0GX49 114 aa1.31□□□□□ -2.2
CCDC88A-208ENST00000444458 A8MU10 97 aa1.31□□□□□ -2.2
CCDC88A-208ENST00000444458 SIX6O95475 246 aa1.31□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 97.3 ms