RNA–Protein interactions for RNA: ENST00000439235.5

CHD3-204, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,263 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-204ENST00000439235 LINC01556Q5JQF7 62 aa14.12□□□□□ -0.15
CHD3-204ENST00000439235 IFI27L1Q96BM0 104 aa14.12□□□□□ -0.15
CHD3-204ENST00000439235 IGLV4-3A0A075B6K6 122 aa14.11□□□□□ -0.15
CHD3-204ENST00000439235 Q6ZUT4 128 aa14.11□□□□□ -0.15
CHD3-204ENST00000439235 Q8N976 141 aa14.11□□□□□ -0.15
CHD3-204ENST00000439235 IGLV4-60A0A075B6I1 120 aa14.1□□□□□ -0.15
CHD3-204ENST00000439235 IGHV3-30P01768 117 aa14.1□□□□□ -0.15
CHD3-204ENST00000439235 IGHV3-33P01772 117 aa14.1□□□□□ -0.15
CHD3-204ENST00000439235 IGHV3-30-3P0DP02 117 aa14.1□□□□□ -0.15
CHD3-204ENST00000439235 IGHV3-30-5P0DP03 117 aa14.1□□□□□ -0.15
CHD3-204ENST00000439235 LINC00173Q6ZV60 143 aa14.1□□□□□ -0.15
CHD3-204ENST00000439235 ZNF664Q8N3J9 261 aa14.1□□□□□ -0.15
CHD3-204ENST00000439235 CDC42SE2Q9NRR3 84 aa14.1□□□□□ -0.15
CHD3-204ENST00000439235 IFITM10A6NMD0 228 aa14.09□□□□□ -0.15
CHD3-204ENST00000439235 LGALS9CQ6DKI2 356 aa14.09□□□□□ -0.15
CHD3-204ENST00000439235 MAP1LC3CQ9BXW4 147 aa14.09□□□□□ -0.15
CHD3-204ENST00000439235 Q9H8V8 135 aa14.09□□□□□ -0.15
CHD3-204ENST00000439235 ANGP03950 147 aaKnown RBP14.08□□□□□ -0.16
CHD3-204ENST00000439235 TEX43Q6ZNM6 134 aa14.08□□□□□ -0.16
CHD3-204ENST00000439235 Q8N3U1 123 aa14.08□□□□□ -0.16
CHD3-204ENST00000439235 BAALCQ8WXS3 180 aa14.08□□□□□ -0.16
CHD3-204ENST00000439235 OPRPNQ99935 248 aaPredicted RBP14.08□□□□□ -0.16
CHD3-204ENST00000439235 VCX2Q9H322 139 aa14.08□□□□□ -0.16
CHD3-204ENST00000439235 PRSS1P07477 247 aa14.06□□□□□ -0.16
CHD3-204ENST00000439235 C2orf88Q9BSF0 95 aa14.06□□□□□ -0.16
CHD3-204ENST00000439235 STARD9Q9P2P6 4700 aa14.05□□□□□ -0.16
CHD3-204ENST00000439235 TRAV9-2A0A087WT02 112 aa14.05□□□□□ -0.16
CHD3-204ENST00000439235 K7EP13 123 aa14.05□□□□□ -0.16
CHD3-204ENST00000439235 PMVKQ15126 192 aa14.05□□□□□ -0.16
CHD3-204ENST00000439235 RNASE13Q5GAN3 156 aaKnown RBP14.05□□□□□ -0.16
CHD3-204ENST00000439235 C10orf126Q8N4M7 172 aa14.05□□□□□ -0.16
CHD3-204ENST00000439235 FAM104AQ969W3 186 aa14.05□□□□□ -0.16
CHD3-204ENST00000439235 AMELXQ99217 191 aa14.05□□□□□ -0.16
CHD3-204ENST00000439235 KLK12Q9UKR0 248 aa14.05□□□□□ -0.16
CHD3-204ENST00000439235 KRTDAPP60985 99 aa14.04□□□□□ -0.16
CHD3-204ENST00000439235 CRPP02741 224 aa14.03□□□□□ -0.16
CHD3-204ENST00000439235 LINC00269Q8N2A0 174 aa14.03□□□□□ -0.16
CHD3-204ENST00000439235 TRAV12-1A0A0B4J245 112 aa14.02□□□□□ -0.17
CHD3-204ENST00000439235 H0Y8G0 127 aa14.02□□□□□ -0.17
CHD3-204ENST00000439235 SYS1-DBNDD2H3BUS1 97 aa14.02□□□□□ -0.17
CHD3-204ENST00000439235 C3orf79P0CE67 100 aa14.02□□□□□ -0.17
CHD3-204ENST00000439235 REG3AQ06141 175 aa14.02□□□□□ -0.17
CHD3-204ENST00000439235 OR10D4PQ8NGN7 298 aa14.02□□□□□ -0.17
CHD3-204ENST00000439235 LINC00476Q8WZB0 136 aa14.02□□□□□ -0.17
CHD3-204ENST00000439235 CST9LQ9H4G1 147 aa14.02□□□□□ -0.17
CHD3-204ENST00000439235 CSMD3Q7Z407 3707 aa14.01□□□□□ -0.17
CHD3-204ENST00000439235 PRSS29PA6NIE9 313 aa14.01□□□□□ -0.17
CHD3-204ENST00000439235 TTC32Q5I0X7 151 aa14.01□□□□□ -0.17
CHD3-204ENST00000439235 ZC2HC1BQ5TFG8 222 aa14.01□□□□□ -0.17
CHD3-204ENST00000439235 CLPSL2Q6UWE3 100 aa14.01□□□□□ -0.17
CHD3-204ENST00000439235 PET117Q6UWS5 81 aa14.01□□□□□ -0.17
CHD3-204ENST00000439235 PRR34Q9NV39 138 aa14.01□□□□□ -0.17
CHD3-204ENST00000439235 IGKV3OR2-268A0A0C4DH90 116 aa14□□□□□ -0.17
CHD3-204ENST00000439235 LY6G6CO95867 125 aa14□□□□□ -0.17
CHD3-204ENST00000439235 SPATA12Q7Z6I5 190 aa14□□□□□ -0.17
CHD3-204ENST00000439235 C20orf202A1L168 122 aa13.99□□□□□ -0.17
CHD3-204ENST00000439235 UBE2WQ96B02 151 aa13.99□□□□□ -0.17
CHD3-204ENST00000439235 TRAV13-1A0A0B4J241 112 aa13.98□□□□□ -0.17
CHD3-204ENST00000439235 IBA57-AS1B1ANH7 110 aa13.98□□□□□ -0.17
CHD3-204ENST00000439235 CCL25O15444 150 aa13.98□□□□□ -0.17
CHD3-204ENST00000439235 CHTOPQ9Y3Y2 248 aaKnown RBP13.98□□□□□ -0.17
CHD3-204ENST00000439235 LINC00959A0A1B0GUT2 108 aa13.97□□□□□ -0.17
CHD3-204ENST00000439235 UBE2D1P51668 147 aa13.97□□□□□ -0.17
CHD3-204ENST00000439235 ODF1Q14990 250 aa13.97□□□□□ -0.17
CHD3-204ENST00000439235 SS18Q15532 418 aa13.97□□□□□ -0.17
CHD3-204ENST00000439235 MIAQ16674 131 aa13.97□□□□□ -0.17
CHD3-204ENST00000439235 ENHOQ6UWT2 76 aa13.97□□□□□ -0.17
CHD3-204ENST00000439235 PLECQ15149 4684 aaKnown RBP13.97□□□□□ -0.17
CHD3-204ENST00000439235 TRAV8-3A0A0A6YYJ7 113 aa13.96□□□□□ -0.17
CHD3-204ENST00000439235 NBDYA0A0U1RRE5 68 aa13.96□□□□□ -0.17
CHD3-204ENST00000439235 F8VRH5 84 aa13.96□□□□□ -0.17
CHD3-204ENST00000439235 SEC11AP67812 179 aa13.96□□□□□ -0.17
CHD3-204ENST00000439235 TRAV8-4A0A0B4J246 113 aa13.95□□□□□ -0.18
CHD3-204ENST00000439235 LINC01545Q5VT33 79 aa13.95□□□□□ -0.18
CHD3-204ENST00000439235 AKR1D1P51857 326 aa13.94□□□□□ -0.18
CHD3-204ENST00000439235 FAM19A3Q7Z5A8 133 aa13.94□□□□□ -0.18
CHD3-204ENST00000439235 MRPL35Q9NZE8 188 aaKnown RBP13.94□□□□□ -0.18
CHD3-204ENST00000439235 A0A0J9YXV3 536 aa13.93□□□□□ -0.18
CHD3-204ENST00000439235 RMI2Q96E14 147 aa13.93□□□□□ -0.18
CHD3-204ENST00000439235 IGLV4-69A0A075B6H9 119 aa13.92□□□□□ -0.18
CHD3-204ENST00000439235 TINCRA0A1B0GVN0 87 aa13.92□□□□□ -0.18
CHD3-204ENST00000439235 IGLC3P0DOY3 106 aa13.92□□□□□ -0.18
CHD3-204ENST00000439235 PLNP26678 52 aa13.92□□□□□ -0.18
CHD3-204ENST00000439235 HERVK_113P63121 156 aa13.92□□□□□ -0.18
CHD3-204ENST00000439235 LINC00242Q5T6M2 205 aa13.92□□□□□ -0.18
CHD3-204ENST00000439235 KRTAP1-5Q9BYS1 174 aa13.92□□□□□ -0.18
CHD3-204ENST00000439235 GEMIN7Q9H840 131 aaKnown RBP13.92□□□□□ -0.18
CHD3-204ENST00000439235 Q9HAA7 133 aa13.92□□□□□ -0.18
CHD3-204ENST00000439235 IGLV10-54A0A075B6I4 117 aa13.91□□□□□ -0.18
CHD3-204ENST00000439235 DPM2O94777 84 aa13.91□□□□□ -0.18
CHD3-204ENST00000439235 NFE4Q86UQ8 179 aa13.91□□□□□ -0.18
CHD3-204ENST00000439235 CHCHD10Q8WYQ3 142 aaPredicted RBP13.91□□□□□ -0.18
CHD3-204ENST00000439235 PMCHL2Q9BQD1 86 aa13.91□□□□□ -0.18
CHD3-204ENST00000439235 CHAC1Q9BUX1 264 aa13.91□□□□□ -0.18
CHD3-204ENST00000439235 C1orf43Q9BWL3 253 aa13.91□□□□□ -0.18
CHD3-204ENST00000439235 LOC105371267A0A1B0GV96 52 aa13.89□□□□□ -0.19
CHD3-204ENST00000439235 SCGB1D1O95968 90 aa13.89□□□□□ -0.19
CHD3-204ENST00000439235 IGKCP01834 107 aa13.89□□□□□ -0.19
CHD3-204ENST00000439235 XCL1P47992 114 aa13.89□□□□□ -0.19
CHD3-204ENST00000439235 IGKV2D-24A0A075B6R9 120 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 90.1 ms