RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 IGKV2D-24A0A075B6R9 120 aa5.46□□□□□ -1.54
VPS53-204ENST00000437048 CELA1Q9UNI1 258 aa5.46□□□□□ -1.54
VPS53-204ENST00000437048 CLPSL1A2RUU4 121 aa5.46□□□□□ -1.54
VPS53-204ENST00000437048 HIGD2AQ9BW72 106 aa5.46□□□□□ -1.54
VPS53-204ENST00000437048 IGF1P05019 195 aa5.46□□□□□ -1.54
VPS53-204ENST00000437048 C17orf77Q96MU5 243 aa5.46□□□□□ -1.54
VPS53-204ENST00000437048 ENHOQ6UWT2 76 aa5.45□□□□□ -1.54
VPS53-204ENST00000437048 NOP10Q9NPE3 64 aaKnown RBP5.45□□□□□ -1.54
VPS53-204ENST00000437048 EPOPA6NHQ4 379 aa5.45□□□□□ -1.54
VPS53-204ENST00000437048 BRI3O95415 125 aa5.45□□□□□ -1.54
VPS53-204ENST00000437048 XGP55808 180 aa5.45□□□□□ -1.54
VPS53-204ENST00000437048 ANKRD11Q6UB99 2663 aaPredicted RBP5.45□□□□□ -1.54
VPS53-204ENST00000437048 Q0VFX4 171 aa5.45□□□□□ -1.54
VPS53-204ENST00000437048 NHLRC4P0CG21 123 aaPredicted RBP5.45□□□□□ -1.54
VPS53-204ENST00000437048 Q8N976 141 aa5.45□□□□□ -1.54
VPS53-204ENST00000437048 PRYO14603 147 aa5.45□□□□□ -1.54
VPS53-204ENST00000437048 C5orf56Q8N8D9 126 aa5.45□□□□□ -1.54
VPS53-204ENST00000437048 GNRH2O43555 120 aa5.45□□□□□ -1.54
VPS53-204ENST00000437048 H0Y9J4 135 aa5.45□□□□□ -1.54
VPS53-204ENST00000437048 IGLV4-3A0A075B6K6 122 aa5.44□□□□□ -1.54
VPS53-204ENST00000437048 IGLV2-8P01709 118 aa5.44□□□□□ -1.54
VPS53-204ENST00000437048 ANKRD17O75179 2603 aaKnown RBP5.44□□□□□ -1.54
VPS53-204ENST00000437048 M0R378 163 aa5.44□□□□□ -1.54
VPS53-204ENST00000437048 FAM19A5Q7Z5A7 132 aaPredicted RBP5.44□□□□□ -1.54
VPS53-204ENST00000437048 Q8IZM0 81 aa5.44□□□□□ -1.54
VPS53-204ENST00000437048 FASNP49327 2511 aaKnown RBP5.44□□□□□ -1.54
VPS53-204ENST00000437048 ERC2-IT1O76042 136 aa5.44□□□□□ -1.54
VPS53-204ENST00000437048 TP53AIP1Q9HCN2 124 aa5.44□□□□□ -1.54
VPS53-204ENST00000437048 EBI3Q14213 229 aa5.44□□□□□ -1.54
VPS53-204ENST00000437048 G3V318 75 aa5.44□□□□□ -1.54
VPS53-204ENST00000437048 IGLV2-23P01705 113 aa5.44□□□□□ -1.54
VPS53-204ENST00000437048 CD164L2Q6UWJ8 174 aa5.44□□□□□ -1.54
VPS53-204ENST00000437048 DIAPH2-AS1Q14236 149 aa5.43□□□□□ -1.54
VPS53-204ENST00000437048 ESRGQ1W209 222 aa5.43□□□□□ -1.54
VPS53-204ENST00000437048 RPL39P62891 51 aaKnown RBP5.43□□□□□ -1.54
VPS53-204ENST00000437048 M0QY20 66 aa5.43□□□□□ -1.54
VPS53-204ENST00000437048 IGLV2-14P01704 120 aa5.43□□□□□ -1.54
VPS53-204ENST00000437048 TPSG1Q9NRR2 321 aa5.43□□□□□ -1.54
VPS53-204ENST00000437048 IGKV1OR2-108A0A075B7D4 117 aa5.43□□□□□ -1.54
VPS53-204ENST00000437048 IGHV3-16A0A0C4DH30 117 aa5.43□□□□□ -1.54
VPS53-204ENST00000437048 MRPS12O15235 138 aaKnown RBP5.42□□□□□ -1.54
VPS53-204ENST00000437048 NTM-AS1Q6ZSK4 140 aa5.42□□□□□ -1.54
VPS53-204ENST00000437048 CGB3P0DN86 165 aa5.42□□□□□ -1.54
VPS53-204ENST00000437048 CGB7P0DN87 165 aa5.42□□□□□ -1.54
VPS53-204ENST00000437048 DAZAP2Q15038 168 aaPredicted RBP5.42□□□□□ -1.54
VPS53-204ENST00000437048 LTBP2Q14767 1821 aa5.42□□□□□ -1.54
VPS53-204ENST00000437048 PROK2Q9HC23 129 aa5.42□□□□□ -1.54
VPS53-204ENST00000437048 SEM1Q6ZVN7 128 aa5.42□□□□□ -1.54
VPS53-204ENST00000437048 LRP4O75096 1905 aa5.42□□□□□ -1.54
VPS53-204ENST00000437048 KLK5Q9Y337 293 aaPredicted RBP5.42□□□□□ -1.54
VPS53-204ENST00000437048 IGHV3-38A0A0C4DH36 116 aa5.42□□□□□ -1.54
VPS53-204ENST00000437048 PLA2G2EQ9NZK7 142 aa5.42□□□□□ -1.54
VPS53-204ENST00000437048 POLR2KP53803 58 aaKnown RBP5.41□□□□□ -1.54
VPS53-204ENST00000437048 WFDC10AQ9H1F0 79 aa5.41□□□□□ -1.54
VPS53-204ENST00000437048 MPLKIPQ8TAP9 179 aa5.41□□□□□ -1.54
VPS53-204ENST00000437048 LINC00322Q6ZN03 302 aaPredicted RBP5.41□□□□□ -1.54
VPS53-204ENST00000437048 Q8N9W7 124 aa5.41□□□□□ -1.54
VPS53-204ENST00000437048 LINC00694P0DN24 101 aa5.41□□□□□ -1.54
VPS53-204ENST00000437048 BRD3OSQ6XYD6 125 aa5.41□□□□□ -1.54
VPS53-204ENST00000437048 IGKV1D-37A0A075B6S9 117 aa5.4□□□□□ -1.54
VPS53-204ENST00000437048 CYP4F30PQ9H0H9 118 aa5.4□□□□□ -1.54
VPS53-204ENST00000437048 TRBV7-6A0A0J9YX20 115 aa5.4□□□□□ -1.54
VPS53-204ENST00000437048 CCDC179H3BU77 68 aa5.4□□□□□ -1.54
VPS53-204ENST00000437048 IGF2RP11717 2491 aa5.4□□□□□ -1.54
VPS53-204ENST00000437048 K7EQG2 157 aa5.4□□□□□ -1.55
VPS53-204ENST00000437048 ODF3L1Q8IXM7 274 aa5.4□□□□□ -1.55
VPS53-204ENST00000437048 DEFB105AQ8NG35 78 aa5.4□□□□□ -1.55
VPS53-204ENST00000437048 HCG22E2RYF7 251 aa5.4□□□□□ -1.55
VPS53-204ENST00000437048 FRMD6-AS1P0C7T7 363 aa5.4□□□□□ -1.55
VPS53-204ENST00000437048 REG3AQ06141 175 aa5.4□□□□□ -1.55
VPS53-204ENST00000437048 KLLNB2CW77 178 aa5.39□□□□□ -1.55
VPS53-204ENST00000437048 TRBV6-8A0A0A6YYG3 113 aa5.39□□□□□ -1.55
VPS53-204ENST00000437048 CDKN2A-AS1Q9UH64 79 aa5.39□□□□□ -1.55
VPS53-204ENST00000437048 MSRB1Q9NZV6 116 aa5.39□□□□□ -1.55
VPS53-204ENST00000437048 ODF3BA8MYP8 253 aa5.39□□□□□ -1.55
VPS53-204ENST00000437048 LINC01546A6NGU7 62 aa5.39□□□□□ -1.55
VPS53-204ENST00000437048 SIRPDQ9H106 197 aa5.39□□□□□ -1.55
VPS53-204ENST00000437048 PLAC8L1A1L4L8 177 aa5.38□□□□□ -1.55
VPS53-204ENST00000437048 TMEM254Q8TBM7 123 aa5.38□□□□□ -1.55
VPS53-204ENST00000437048 ZNF73O43830 326 aaPredicted RBP5.38□□□□□ -1.55
VPS53-204ENST00000437048 TP53TG3Q9ULZ0 132 aa5.38□□□□□ -1.55
VPS53-204ENST00000437048 EGFEM1PQ0D2K5 195 aa5.38□□□□□ -1.55
VPS53-204ENST00000437048 C9orf85Q96MD7 179 aa5.38□□□□□ -1.55
VPS53-204ENST00000437048 TNFRSF13BO14836 293 aaPredicted RBP5.38□□□□□ -1.55
VPS53-204ENST00000437048 FAM215AQ9Y5M1 114 aa5.37□□□□□ -1.55
VPS53-204ENST00000437048 ARTNQ5T4W7 220 aa5.37□□□□□ -1.55
VPS53-204ENST00000437048 CHCHD10Q8WYQ3 142 aaPredicted RBP5.37□□□□□ -1.55
VPS53-204ENST00000437048 DEFB114Q30KQ6 69 aa5.37□□□□□ -1.55
VPS53-204ENST00000437048 IGLV4-69A0A075B6H9 119 aa5.36□□□□□ -1.55
VPS53-204ENST00000437048 IGHV4-28A0A0C4DH34 117 aa5.36□□□□□ -1.55
VPS53-204ENST00000437048 GDF5OSQ5U4N7 250 aa5.36□□□□□ -1.55
VPS53-204ENST00000437048 CTSZQ9UBR2 303 aa5.36□□□□□ -1.55
VPS53-204ENST00000437048 Q96MF0 132 aa5.36□□□□□ -1.55
VPS53-204ENST00000437048 LINC00467Q9BRT7 94 aa5.36□□□□□ -1.55
VPS53-204ENST00000437048 Q9HAA7 133 aa5.36□□□□□ -1.55
VPS53-204ENST00000437048 RNASE13Q5GAN3 156 aaKnown RBP5.36□□□□□ -1.55
VPS53-204ENST00000437048 Q8N814 137 aa5.36□□□□□ -1.55
VPS53-204ENST00000437048 IGLV2-11P01706 119 aa5.36□□□□□ -1.55
VPS53-204ENST00000437048 PSMG3-AS1Q96PY0 264 aa5.36□□□□□ -1.55
VPS53-204ENST00000437048 IGIPA6NJ69 53 aa5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 84.7 ms