RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 RNF183Q96D59 192 aa14.94□□□□□ -0.02
PTPRF-207ENST00000436724 LINC01549A6NIU2 74 aa14.93□□□□□ -0.02
PTPRF-207ENST00000436724 COTL1Q14019 142 aa14.93□□□□□ -0.02
PTPRF-207ENST00000436724 CEMP1Q6PRD7 247 aaPredicted RBP14.93□□□□□ -0.02
PTPRF-207ENST00000436724 Q8NAQ8 132 aa14.93□□□□□ -0.02
PTPRF-207ENST00000436724 NHP2Q9NX24 153 aaKnown RBP14.93□□□□□ -0.02
PTPRF-207ENST00000436724 TMEM141Q96I45 108 aa14.92□□□□□ -0.02
PTPRF-207ENST00000436724 SPCS1Q9Y6A9 102 aa14.92□□□□□ -0.02
PTPRF-207ENST00000436724 NBEAL1Q6ZS30 2694 aa14.92□□□□□ -0.02
PTPRF-207ENST00000436724 IGKV2D-29A0A075B6S2 120 aaPredicted RBP14.92□□□□□ -0.02
PTPRF-207ENST00000436724 TRBV6-4A0A1B0GX49 114 aa14.92□□□□□ -0.02
PTPRF-207ENST00000436724 IGKV2-29A2NJV5 120 aaPredicted RBP14.92□□□□□ -0.02
PTPRF-207ENST00000436724 E9PLD3 99 aa14.92□□□□□ -0.02
PTPRF-207ENST00000436724 UBE2D3P61077 147 aa14.91□□□□□ -0.02
PTPRF-207ENST00000436724 UBE2D2P62837 147 aa14.91□□□□□ -0.02
PTPRF-207ENST00000436724 RNF151Q2KHN1 245 aa14.91□□□□□ -0.02
PTPRF-207ENST00000436724 FABP2P12104 132 aa14.91□□□□□ -0.02
PTPRF-207ENST00000436724 DNAH3Q8TD57 4116 aa14.9□□□□□ -0.02
PTPRF-207ENST00000436724 CIDEAO60543 219 aa14.9□□□□□ -0.02
PTPRF-207ENST00000436724 HIST1H4GQ99525 98 aa14.9□□□□□ -0.02
PTPRF-207ENST00000436724 PRADC1Q9BSG0 188 aa14.9□□□□□ -0.02
PTPRF-207ENST00000436724 IGLV4-69A0A075B6H9 119 aa14.9□□□□□ -0.02
PTPRF-207ENST00000436724 PMVKQ15126 192 aa14.9□□□□□ -0.02
PTPRF-207ENST00000436724 CELA1Q9UNI1 258 aa14.9□□□□□ -0.02
PTPRF-207ENST00000436724 MIFP14174 115 aa14.89□□□□□ -0.03
PTPRF-207ENST00000436724 NTM-AS1Q6ZSK4 140 aa14.89□□□□□ -0.03
PTPRF-207ENST00000436724 FAM104AQ969W3 186 aa14.89□□□□□ -0.03
PTPRF-207ENST00000436724 MDFIQ99750 246 aa14.89□□□□□ -0.03
PTPRF-207ENST00000436724 RETNQ9HD89 108 aa14.89□□□□□ -0.03
PTPRF-207ENST00000436724 LYRM9A8MSI8 78 aa14.88□□□□□ -0.03
PTPRF-207ENST00000436724 C12orf74Q32Q52 190 aa14.88□□□□□ -0.03
PTPRF-207ENST00000436724 OR5A1Q8NGJ0 315 aa14.88□□□□□ -0.03
PTPRF-207ENST00000436724 IGLV4-3A0A075B6K6 122 aa14.88□□□□□ -0.03
PTPRF-207ENST00000436724 C11orf86A6NJI1 115 aa14.88□□□□□ -0.03
PTPRF-207ENST00000436724 RNASE13Q5GAN3 156 aaKnown RBP14.87□□□□□ -0.03
PTPRF-207ENST00000436724 DAZ4Q86SG3 579 aaKnown RBP14.87□□□□□ -0.03
PTPRF-207ENST00000436724 DAZ3Q9NR90 486 aaKnown RBP14.87□□□□□ -0.03
PTPRF-207ENST00000436724 IGLL5B9A064 214 aa14.87□□□□□ -0.03
PTPRF-207ENST00000436724 A8MZ25 164 aa14.86□□□□□ -0.03
PTPRF-207ENST00000436724 PRB2P02812 416 aaPredicted RBP14.86□□□□□ -0.03
PTPRF-207ENST00000436724 UBE2D4Q9Y2X8 147 aa14.86□□□□□ -0.03
PTPRF-207ENST00000436724 PYGO1Q9Y3Y4 419 aa14.85□□□□□ -0.03
PTPRF-207ENST00000436724 MGAM2Q2M2H8 2515 aa14.84□□□□□ -0.03
PTPRF-207ENST00000436724 LINC00694P0DN24 101 aa14.84□□□□□ -0.03
PTPRF-207ENST00000436724 PCP4P48539 62 aa14.84□□□□□ -0.03
PTPRF-207ENST00000436724 PLEKHB2Q96CS7 222 aa14.84□□□□□ -0.03
PTPRF-207ENST00000436724 ZNF815PA8K554 130 aa14.83□□□□□ -0.04
PTPRF-207ENST00000436724 DAD1P61803 113 aa14.83□□□□□ -0.04
PTPRF-207ENST00000436724 PAPPA-AS1Q5QFB9 102 aa14.83□□□□□ -0.04
PTPRF-207ENST00000436724 VCX2Q9H322 139 aa14.83□□□□□ -0.04
PTPRF-207ENST00000436724 A0A1B0GWB2 263 aa14.83□□□□□ -0.04
PTPRF-207ENST00000436724 K7ERU9 68 aa14.83□□□□□ -0.04
PTPRF-207ENST00000436724 CRYBA4P53673 196 aa14.83□□□□□ -0.04
PTPRF-207ENST00000436724 TENM3Q9P273 2699 aa14.82□□□□□ -0.04
PTPRF-207ENST00000436724 GYPEP15421 78 aa14.81□□□□□ -0.04
PTPRF-207ENST00000436724 Q6ZUT4 128 aa14.81□□□□□ -0.04
PTPRF-207ENST00000436724 SPANXA1Q9NS26 97 aa14.81□□□□□ -0.04
PTPRF-207ENST00000436724 PRO0255Q9UI72 69 aa14.8□□□□□ -0.04
PTPRF-207ENST00000436724 SPART-AS1P0CW21 52 aa14.8□□□□□ -0.04
PTPRF-207ENST00000436724 AMELXQ99217 191 aa14.8□□□□□ -0.04
PTPRF-207ENST00000436724 VPS25Q9BRG1 176 aa14.8□□□□□ -0.04
PTPRF-207ENST00000436724 A0A0J9YY99 117 aa14.78□□□□□ -0.04
PTPRF-207ENST00000436724 SBSPONQ8IVN8 264 aa14.78□□□□□ -0.04
PTPRF-207ENST00000436724 A0A0J9YXV3 536 aa14.78□□□□□ -0.04
PTPRF-207ENST00000436724 HERVK_113P61574 105 aa14.78□□□□□ -0.04
PTPRF-207ENST00000436724 SCGB1D4Q6XE38 83 aa14.78□□□□□ -0.04
PTPRF-207ENST00000436724 GTSF1LQ9H1H1 148 aa14.78□□□□□ -0.04
PTPRF-207ENST00000436724 TSPEAR-AS2P59090 65 aa14.77□□□□□ -0.04
PTPRF-207ENST00000436724 C21orf62-AS1Q17RA5 79 aa14.77□□□□□ -0.04
PTPRF-207ENST00000436724 A0A096LPF7 62 aa14.77□□□□□ -0.05
PTPRF-207ENST00000436724 TMEM170BQ5T4T1 132 aa14.77□□□□□ -0.05
PTPRF-207ENST00000436724 PAX4O43316 350 aa14.76□□□□□ -0.05
PTPRF-207ENST00000436724 ATP5G1P05496 136 aa14.76□□□□□ -0.05
PTPRF-207ENST00000436724 HTN3P15516 51 aa14.76□□□□□ -0.05
PTPRF-207ENST00000436724 DGAT2L7PQ6IED9 249 aa14.76□□□□□ -0.05
PTPRF-207ENST00000436724 VSIG2Q96IQ7 327 aa14.76□□□□□ -0.05
PTPRF-207ENST00000436724 NFE4Q86UQ8 179 aa14.75□□□□□ -0.05
PTPRF-207ENST00000436724 TMEM243Q9BU79 118 aa14.75□□□□□ -0.05
PTPRF-207ENST00000436724 SRSF9Q13242 221 aaKnown RBP eCLIP14.74□□□□□ -0.05
PTPRF-207ENST00000436724 TRBV6-8A0A0A6YYG3 113 aa14.74□□□□□ -0.05
PTPRF-207ENST00000436724 F5H768 121 aa14.74□□□□□ -0.05
PTPRF-207ENST00000436724 ATP6V0E2Q8NHE4 81 aa14.74□□□□□ -0.05
PTPRF-207ENST00000436724 TIMM21Q9BVV7 248 aa14.74□□□□□ -0.05
PTPRF-207ENST00000436724 TRAV26-1A0A087WT03 109 aa14.73□□□□□ -0.05
PTPRF-207ENST00000436724 UBE2L6O14933 153 aa14.73□□□□□ -0.05
PTPRF-207ENST00000436724 UBE2D1P51668 147 aa14.72□□□□□ -0.05
PTPRF-207ENST00000436724 MRPS36P82909 103 aaKnown RBP14.72□□□□□ -0.05
PTPRF-207ENST00000436724 K7EIL1 84 aa14.71□□□□□ -0.05
PTPRF-207ENST00000436724 ZNF22P17026 224 aaPredicted RBP14.71□□□□□ -0.05
PTPRF-207ENST00000436724 GAGE6Q13070 117 aa14.71□□□□□ -0.05
PTPRF-207ENST00000436724 TMEM223A0PJW6 202 aa14.7□□□□□ -0.06
PTPRF-207ENST00000436724 H3BMG7 143 aa14.7□□□□□ -0.06
PTPRF-207ENST00000436724 J3QQQ9 107 aa14.7□□□□□ -0.06
PTPRF-207ENST00000436724 CHCHD5Q9BSY4 110 aa14.7□□□□□ -0.06
PTPRF-207ENST00000436724 CSDC2Q9Y534 153 aaKnown RBP14.7□□□□□ -0.06
PTPRF-207ENST00000436724 TMEM238LA0A1B0GVL6 79 aa14.69□□□□□ -0.06
PTPRF-207ENST00000436724 A6NJY4 79 aa14.69□□□□□ -0.06
PTPRF-207ENST00000436724 WFDC2Q14508 124 aa14.69□□□□□ -0.06
PTPRF-207ENST00000436724 SPANXB1Q9NS25 103 aaPredicted RBP14.69□□□□□ -0.06
PTPRF-207ENST00000436724 PGPEP1Q9NXJ5 209 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms