RNA–Protein interactions for RNA: ENST00000434376.6

SCARF1-203, Transcript of scavenger receptor class F member 1, humanhuman

TSL 1 (best)

Gene SCARF1, Length 3,342 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-203ENST00000434376 DEFB4AO15263 64 aa11.37□□□□□ -0.59
SCARF1-203ENST00000434376 NDUFA7O95182 113 aa11.37□□□□□ -0.59
SCARF1-203ENST00000434376 ODF3L2Q3SX64 289 aa11.37□□□□□ -0.59
SCARF1-203ENST00000434376 NOP10Q9NPE3 64 aaKnown RBP11.37□□□□□ -0.59
SCARF1-203ENST00000434376 LINC01006Q8NI28 216 aa11.36□□□□□ -0.59
SCARF1-203ENST00000434376 IGLV4-69A0A075B6H9 119 aa11.36□□□□□ -0.59
SCARF1-203ENST00000434376 TRGV11A0A075B6L2 103 aa11.36□□□□□ -0.59
SCARF1-203ENST00000434376 GAGE7O76087 117 aa11.36□□□□□ -0.59
SCARF1-203ENST00000434376 GAGE12FP0CL80 117 aa11.36□□□□□ -0.59
SCARF1-203ENST00000434376 GAGE12GP0CL81 117 aa11.36□□□□□ -0.59
SCARF1-203ENST00000434376 GAGE12IP0CL82 117 aa11.36□□□□□ -0.59
SCARF1-203ENST00000434376 POLR2KP53803 58 aaKnown RBP11.36□□□□□ -0.59
SCARF1-203ENST00000434376 MUSTN1Q8IVN3 82 aa11.36□□□□□ -0.59
SCARF1-203ENST00000434376 A0A096LPF7 62 aa11.35□□□□□ -0.59
SCARF1-203ENST00000434376 UBE2D3P61077 147 aa11.35□□□□□ -0.59
SCARF1-203ENST00000434376 UBE2D2P62837 147 aa11.35□□□□□ -0.59
SCARF1-203ENST00000434376 Q6ZTI0 123 aa11.35□□□□□ -0.59
SCARF1-203ENST00000434376 MGAM2Q2M2H8 2515 aa11.35□□□□□ -0.59
SCARF1-203ENST00000434376 TEX49A0A1B0GTD5 131 aa11.35□□□□□ -0.59
SCARF1-203ENST00000434376 GAGE12JA6NER3 117 aa11.35□□□□□ -0.59
SCARF1-203ENST00000434376 IGHV3-30P01768 117 aa11.35□□□□□ -0.59
SCARF1-203ENST00000434376 IGHV3-30-5P0DP03 117 aa11.35□□□□□ -0.59
SCARF1-203ENST00000434376 GAGE4Q13068 117 aa11.35□□□□□ -0.59
SCARF1-203ENST00000434376 GAGE5Q13069 117 aa11.35□□□□□ -0.59
SCARF1-203ENST00000434376 ATP6V0E2Q8NHE4 81 aa11.35□□□□□ -0.59
SCARF1-203ENST00000434376 TRGV2A0A075B6R0 118 aa11.34□□□□□ -0.59
SCARF1-203ENST00000434376 TRAV4A0A0B4J268 109 aa11.34□□□□□ -0.59
SCARF1-203ENST00000434376 DEFB130BP0DP73 79 aa11.34□□□□□ -0.59
SCARF1-203ENST00000434376 DEFB130AP0DP74 79 aa11.34□□□□□ -0.59
SCARF1-203ENST00000434376 DAND5Q8N907 189 aa11.34□□□□□ -0.59
SCARF1-203ENST00000434376 C9orf85Q96MD7 179 aa11.34□□□□□ -0.59
SCARF1-203ENST00000434376 TRAV13-1A0A0B4J241 112 aa11.34□□□□□ -0.59
SCARF1-203ENST00000434376 CRLF1O75462 422 aa11.34□□□□□ -0.59
SCARF1-203ENST00000434376 C4orf3Q8WVX3 66 aa11.34□□□□□ -0.59
SCARF1-203ENST00000434376 FSHBP01225 129 aa11.33□□□□□ -0.6
SCARF1-203ENST00000434376 PF4P02776 101 aa11.32□□□□□ -0.6
SCARF1-203ENST00000434376 SLC25A29Q8N8R3 303 aa11.32□□□□□ -0.6
SCARF1-203ENST00000434376 INSP01308 110 aa11.32□□□□□ -0.6
SCARF1-203ENST00000434376 PAPPA-AS1Q5QFB9 102 aa11.32□□□□□ -0.6
SCARF1-203ENST00000434376 TMEM262E9PQX1 116 aa11.32□□□□□ -0.6
SCARF1-203ENST00000434376 I3L3M4 83 aa11.32□□□□□ -0.6
SCARF1-203ENST00000434376 LGALS9O00182 355 aa11.32□□□□□ -0.6
SCARF1-203ENST00000434376 LOC100131303A0A0U1RQF7 123 aa11.31□□□□□ -0.6
SCARF1-203ENST00000434376 PPP1R17O96001 155 aa11.31□□□□□ -0.6
SCARF1-203ENST00000434376 ZNF415Q09FC8 603 aa11.31□□□□□ -0.6
SCARF1-203ENST00000434376 GAGE6Q13070 117 aa11.31□□□□□ -0.6
SCARF1-203ENST00000434376 TRAV8-4A0A0B4J246 113 aa11.3□□□□□ -0.6
SCARF1-203ENST00000434376 IGIPA6NJ69 53 aa11.3□□□□□ -0.6
SCARF1-203ENST00000434376 M0R2P5 195 aa11.3□□□□□ -0.6
SCARF1-203ENST00000434376 INAFM1C9JVW0 142 aa11.29□□□□□ -0.6
SCARF1-203ENST00000434376 CCDC179H3BU77 68 aa11.29□□□□□ -0.6
SCARF1-203ENST00000434376 C2orf82Q6UX34 121 aa11.29□□□□□ -0.6
SCARF1-203ENST00000434376 C15orf53Q8NAA6 179 aa11.29□□□□□ -0.6
SCARF1-203ENST00000434376 TMEM89A2RUT3 159 aa11.29□□□□□ -0.6
SCARF1-203ENST00000434376 LINC00482Q8N8I6 264 aa11.29□□□□□ -0.6
SCARF1-203ENST00000434376 LINC00467Q9BRT7 94 aa11.29□□□□□ -0.6
SCARF1-203ENST00000434376 IGHV3-33P01772 117 aa11.29□□□□□ -0.6
SCARF1-203ENST00000434376 C20orf203Q8NBC4 194 aa11.29□□□□□ -0.6
SCARF1-203ENST00000434376 SPATA3Q8NHX4 192 aa11.29□□□□□ -0.6
SCARF1-203ENST00000434376 CLEC2BQ92478 149 aa11.28□□□□□ -0.6
SCARF1-203ENST00000434376 BRI3O95415 125 aa11.28□□□□□ -0.6
SCARF1-203ENST00000434376 SMIM20Q8N5G0 67 aa11.28□□□□□ -0.6
SCARF1-203ENST00000434376 LINC01620Q4KN68 170 aa11.27□□□□□ -0.6
SCARF1-203ENST00000434376 TRBV27A0A0K0K1C4 114 aa11.27□□□□□ -0.61
SCARF1-203ENST00000434376 MED14OSP0DP75 135 aa11.27□□□□□ -0.61
SCARF1-203ENST00000434376 ATXN8Q156A1 80 aa11.27□□□□□ -0.61
SCARF1-203ENST00000434376 C1orf158Q8N1D5 194 aa11.27□□□□□ -0.61
SCARF1-203ENST00000434376 IGLV4-3A0A075B6K6 122 aa11.26□□□□□ -0.61
SCARF1-203ENST00000434376 POM121L12Q8N7R1 296 aa11.26□□□□□ -0.61
SCARF1-203ENST00000434376 C11orf68Q9H3H3 251 aaKnown RBP11.26□□□□□ -0.61
SCARF1-203ENST00000434376 TMEM141Q96I45 108 aa11.26□□□□□ -0.61
SCARF1-203ENST00000434376 PKD1L1Q8TDX9 2849 aa11.26□□□□□ -0.61
SCARF1-203ENST00000434376 NDUFV3P56181 108 aaKnown RBP11.25□□□□□ -0.61
SCARF1-203ENST00000434376 IFITM1P13164 125 aa11.25□□□□□ -0.61
SCARF1-203ENST00000434376 CLPSL2Q6UWE3 100 aa11.25□□□□□ -0.61
SCARF1-203ENST00000434376 TOMM7Q9P0U1 55 aa11.25□□□□□ -0.61
SCARF1-203ENST00000434376 TRIAP1O43715 76 aa11.25□□□□□ -0.61
SCARF1-203ENST00000434376 HTN3P15516 51 aa11.25□□□□□ -0.61
SCARF1-203ENST00000434376 TRBV7-9A0A0J9YWB2 115 aa11.24□□□□□ -0.61
SCARF1-203ENST00000434376 EIF4EBP3O60516 100 aaPredicted RBP11.24□□□□□ -0.61
SCARF1-203ENST00000434376 UBE2WQ96B02 151 aa11.24□□□□□ -0.61
SCARF1-203ENST00000434376 TIMM21Q9BVV7 248 aa11.24□□□□□ -0.61
SCARF1-203ENST00000434376 NXPH4O95158 308 aa11.24□□□□□ -0.61
SCARF1-203ENST00000434376 LRRC75A-AS1Q8N1F1 130 aa11.24□□□□□ -0.61
SCARF1-203ENST00000434376 LINC00694P0DN24 101 aa11.24□□□□□ -0.61
SCARF1-203ENST00000434376 ZNF22P17026 224 aaPredicted RBP11.23□□□□□ -0.61
SCARF1-203ENST00000434376 SVIPQ8NHG7 77 aa11.23□□□□□ -0.61
SCARF1-203ENST00000434376 TMEM263Q8WUH6 116 aaKnown RBP11.23□□□□□ -0.61
SCARF1-203ENST00000434376 TRGV4A0A0C4DH28 118 aa11.23□□□□□ -0.61
SCARF1-203ENST00000434376 RHODO00212 210 aa11.23□□□□□ -0.61
SCARF1-203ENST00000434376 TIMM17AQ99595 171 aa11.22□□□□□ -0.61
SCARF1-203ENST00000434376 KMT2BQ9UMN6 2715 aaPredicted RBP11.22□□□□□ -0.61
SCARF1-203ENST00000434376 LEPROTO15243 131 aa11.22□□□□□ -0.61
SCARF1-203ENST00000434376 LY6G6DO95868 133 aa11.22□□□□□ -0.61
SCARF1-203ENST00000434376 COX6CP09669 75 aa11.22□□□□□ -0.61
SCARF1-203ENST00000434376 IGHV3-30-3P0DP02 117 aa11.22□□□□□ -0.61
SCARF1-203ENST00000434376 KRTAP1-1Q07627 177 aa11.22□□□□□ -0.61
SCARF1-203ENST00000434376 A0A0J9YXY3 114 aa11.21□□□□□ -0.61
SCARF1-203ENST00000434376 TMEM223A0PJW6 202 aa11.21□□□□□ -0.62
SCARF1-203ENST00000434376 NDUFA12Q9UI09 145 aa11.21□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms