RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 C9JAW5 83 aa9.84□□□□□ -0.83
COL6A3-207ENST00000433762 COX6CP09669 75 aa9.84□□□□□ -0.83
COL6A3-207ENST00000433762 RPL13AP40429 203 aaKnown RBP9.84□□□□□ -0.83
COL6A3-207ENST00000433762 Q1RN00 199 aa9.84□□□□□ -0.83
COL6A3-207ENST00000433762 Q6ZSV7 163 aa9.84□□□□□ -0.83
COL6A3-207ENST00000433762 STHQ8IWL8 128 aa9.84□□□□□ -0.83
COL6A3-207ENST00000433762 FAM110AQ9BQ89 295 aa9.84□□□□□ -0.83
COL6A3-207ENST00000433762 TRBV10-2A0A0K0K1G8 114 aa9.83□□□□□ -0.84
COL6A3-207ENST00000433762 CIRBPQ14011 172 aaKnown RBP9.83□□□□□ -0.84
COL6A3-207ENST00000433762 Q96MF0 132 aa9.83□□□□□ -0.84
COL6A3-207ENST00000433762 TRAV4A0A0B4J268 109 aa9.83□□□□□ -0.84
COL6A3-207ENST00000433762 RPL36AP83881 106 aaKnown RBP9.83□□□□□ -0.84
COL6A3-207ENST00000433762 KHDC1LQ5JSQ8 128 aa9.83□□□□□ -0.84
COL6A3-207ENST00000433762 DGAT2L7PQ6IED9 249 aa9.83□□□□□ -0.84
COL6A3-207ENST00000433762 KRTAP1-3Q8IUG1 177 aa9.83□□□□□ -0.84
COL6A3-207ENST00000433762 C1orf158Q8N1D5 194 aa9.83□□□□□ -0.84
COL6A3-207ENST00000433762 RPL36ALQ969Q0 106 aaKnown RBP9.83□□□□□ -0.84
COL6A3-207ENST00000433762 ICOSQ9Y6W8 199 aa9.83□□□□□ -0.84
COL6A3-207ENST00000433762 SPINK8P0C7L1 97 aa9.82□□□□□ -0.84
COL6A3-207ENST00000433762 ADAMTSL4-AS1Q5T5F5 129 aa9.82□□□□□ -0.84
COL6A3-207ENST00000433762 Q9UF83 564 aa9.82□□□□□ -0.84
COL6A3-207ENST00000433762 FASNP49327 2511 aaKnown RBP9.82□□□□□ -0.84
COL6A3-207ENST00000433762 H3BT86 120 aa9.82□□□□□ -0.84
COL6A3-207ENST00000433762 K7EQD1 137 aa9.82□□□□□ -0.84
COL6A3-207ENST00000433762 TRIAP1O43715 76 aa9.82□□□□□ -0.84
COL6A3-207ENST00000433762 PRSS2P07478 247 aa9.81□□□□□ -0.84
COL6A3-207ENST00000433762 TMEM101Q96IK0 257 aa9.81□□□□□ -0.84
COL6A3-207ENST00000433762 CDKN2A-AS1Q9UH64 79 aa9.81□□□□□ -0.84
COL6A3-207ENST00000433762 H7C423 109 aa9.81□□□□□ -0.84
COL6A3-207ENST00000433762 NAV2Q8IVL1 2488 aa9.81□□□□□ -0.84
COL6A3-207ENST00000433762 APCP25054 2843 aa9.8□□□□□ -0.84
COL6A3-207ENST00000433762 IGHV3OR16-12A0A075B7B8 117 aa9.8□□□□□ -0.84
COL6A3-207ENST00000433762 PRM2P04554 102 aa9.8□□□□□ -0.84
COL6A3-207ENST00000433762 RNASE13Q5GAN3 156 aaKnown RBP9.8□□□□□ -0.84
COL6A3-207ENST00000433762 XCL2Q9UBD3 114 aa9.8□□□□□ -0.84
COL6A3-207ENST00000433762 ADARB2-AS1A8MUL3 147 aa9.8□□□□□ -0.84
COL6A3-207ENST00000433762 CREBBPQ92793 2442 aa9.8□□□□□ -0.84
COL6A3-207ENST00000433762 CCL24O00175 119 aa9.79□□□□□ -0.84
COL6A3-207ENST00000433762 LINC00242Q5T6M2 205 aa9.79□□□□□ -0.84
COL6A3-207ENST00000433762 IGHV3-38A0A0C4DH36 116 aa9.79□□□□□ -0.84
COL6A3-207ENST00000433762 DNAJC9-AS1A6NH13 148 aa9.79□□□□□ -0.84
COL6A3-207ENST00000433762 HERV-K104P63124 156 aa9.79□□□□□ -0.84
COL6A3-207ENST00000433762 TRGV1A0A0A0MS02 117 aa9.78□□□□□ -0.84
COL6A3-207ENST00000433762 H7C2G1 150 aa9.78□□□□□ -0.84
COL6A3-207ENST00000433762 XGP55808 180 aa9.78□□□□□ -0.84
COL6A3-207ENST00000433762 C16orf95Q9H693 158 aa9.78□□□□□ -0.84
COL6A3-207ENST00000433762 LST1O00453 97 aa9.77□□□□□ -0.85
COL6A3-207ENST00000433762 C16orf74Q96GX8 76 aa9.77□□□□□ -0.85
COL6A3-207ENST00000433762 SMIM1B2RUZ4 78 aa9.77□□□□□ -0.85
COL6A3-207ENST00000433762 CDC42SE2Q9NRR3 84 aa9.76□□□□□ -0.85
COL6A3-207ENST00000433762 MAP1AP78559 2803 aaPredicted RBP9.75□□□□□ -0.85
COL6A3-207ENST00000433762 MXRA5Q9NR99 2828 aa9.75□□□□□ -0.85
COL6A3-207ENST00000433762 MT-ATP8P03928 68 aa9.75□□□□□ -0.85
COL6A3-207ENST00000433762 DEFB121Q5J5C9 76 aa9.75□□□□□ -0.85
COL6A3-207ENST00000433762 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.75□□□□□ -0.85
COL6A3-207ENST00000433762 LINC00308Q8TCZ7 52 aa9.75□□□□□ -0.85
COL6A3-207ENST00000433762 NTN5Q8WTR8 489 aaPredicted RBP9.75□□□□□ -0.85
COL6A3-207ENST00000433762 TRBV6-4A0A1B0GX49 114 aa9.75□□□□□ -0.85
COL6A3-207ENST00000433762 CKS1BP61024 79 aa9.75□□□□□ -0.85
COL6A3-207ENST00000433762 COX6A2Q02221 97 aa9.75□□□□□ -0.85
COL6A3-207ENST00000433762 UBE2WQ96B02 151 aa9.75□□□□□ -0.85
COL6A3-207ENST00000433762 ZNF625Q96I27 306 aaPredicted RBP9.75□□□□□ -0.85
COL6A3-207ENST00000433762 OVOL2Q9BRP0 275 aa9.75□□□□□ -0.85
COL6A3-207ENST00000433762 CSMD2Q7Z408 3487 aa9.75□□□□□ -0.85
COL6A3-207ENST00000433762 A8MZ25 164 aa9.74□□□□□ -0.85
COL6A3-207ENST00000433762 MRPL23Q16540 153 aaKnown RBP9.74□□□□□ -0.85
COL6A3-207ENST00000433762 NTM-AS1Q6ZSK4 140 aa9.74□□□□□ -0.85
COL6A3-207ENST00000433762 Q9H8V8 135 aa9.74□□□□□ -0.85
COL6A3-207ENST00000433762 HECTD1Q9ULT8 2610 aa9.74□□□□□ -0.85
COL6A3-207ENST00000433762 FAM240AA0A1B0GVK7 77 aa9.74□□□□□ -0.85
COL6A3-207ENST00000433762 F5H768 121 aa9.74□□□□□ -0.85
COL6A3-207ENST00000433762 C2orf82Q6UX34 121 aa9.74□□□□□ -0.85
COL6A3-207ENST00000433762 Q6ZTI0 123 aa9.74□□□□□ -0.85
COL6A3-207ENST00000433762 TMEM243Q9BU79 118 aa9.74□□□□□ -0.85
COL6A3-207ENST00000433762 UNC79Q9P2D8 2635 aa9.74□□□□□ -0.85
COL6A3-207ENST00000433762 LINC00694P0DN24 101 aa9.73□□□□□ -0.85
COL6A3-207ENST00000433762 ZANQ9Y493 2812 aa9.73□□□□□ -0.85
COL6A3-207ENST00000433762 NBPF19A0A087WUL8 3843 aa9.73□□□□□ -0.85
COL6A3-207ENST00000433762 Q6Q795 121 aa9.73□□□□□ -0.85
COL6A3-207ENST00000433762 CITED1Q99966 193 aa9.73□□□□□ -0.85
COL6A3-207ENST00000433762 RNASE1P07998 156 aaKnown RBP9.72□□□□□ -0.85
COL6A3-207ENST00000433762 WFDC11Q8NEX6 87 aa9.72□□□□□ -0.85
COL6A3-207ENST00000433762 CITED2Q99967 270 aaPredicted RBP9.72□□□□□ -0.85
COL6A3-207ENST00000433762 PF4P02776 101 aa9.72□□□□□ -0.85
COL6A3-207ENST00000433762 PLAC8L1A1L4L8 177 aa9.71□□□□□ -0.85
COL6A3-207ENST00000433762 IGLV1-51P01701 117 aa9.71□□□□□ -0.85
COL6A3-207ENST00000433762 GIG44P09565 113 aaPredicted RBP9.71□□□□□ -0.85
COL6A3-207ENST00000433762 SHISA2Q6UWI4 295 aa9.71□□□□□ -0.85
COL6A3-207ENST00000433762 ITPR2Q14571 2701 aa9.71□□□□□ -0.86
COL6A3-207ENST00000433762 TRAV8-4A0A0B4J246 113 aa9.71□□□□□ -0.86
COL6A3-207ENST00000433762 COX7A2LO14548 114 aa9.71□□□□□ -0.86
COL6A3-207ENST00000433762 UBE2L6O14933 153 aa9.71□□□□□ -0.86
COL6A3-207ENST00000433762 PDZD2O15018 2839 aa9.7□□□□□ -0.86
COL6A3-207ENST00000433762 FAM222AQ5U5X8 452 aa9.7□□□□□ -0.86
COL6A3-207ENST00000433762 ESM1Q9NQ30 184 aa9.7□□□□□ -0.86
COL6A3-207ENST00000433762 CCDC168Q8NDH2 2452 aa9.7□□□□□ -0.86
COL6A3-207ENST00000433762 PRIMA1Q86XR5 153 aa9.7□□□□□ -0.86
COL6A3-207ENST00000433762 NOP10Q9NPE3 64 aaKnown RBP9.7□□□□□ -0.86
COL6A3-207ENST00000433762 C19orf73Q9NVV2 129 aa9.7□□□□□ -0.86
COL6A3-207ENST00000433762 GAGE12JA6NER3 117 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms