RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 ADAMTSL4-AS1Q5T5F5 129 aa8.17□□□□□ -1.1
USP4-205ENST00000431357 DGAT2L7PQ6IED9 249 aa8.17□□□□□ -1.1
USP4-205ENST00000431357 IMUPQ9GZP8 106 aa8.17□□□□□ -1.1
USP4-205ENST00000431357 Q9UF83 564 aa8.17□□□□□ -1.1
USP4-205ENST00000431357 TRIAP1O43715 76 aa8.16□□□□□ -1.1
USP4-205ENST00000431357 CRLF1O75462 422 aa8.16□□□□□ -1.1
USP4-205ENST00000431357 ATP5G1P05496 136 aa8.16□□□□□ -1.1
USP4-205ENST00000431357 KHDC1LQ5JSQ8 128 aa8.16□□□□□ -1.1
USP4-205ENST00000431357 ICOSQ9Y6W8 199 aa8.16□□□□□ -1.1
USP4-205ENST00000431357 NDUFA1O15239 70 aa8.15□□□□□ -1.1
USP4-205ENST00000431357 NDUFA7O95182 113 aa8.15□□□□□ -1.1
USP4-205ENST00000431357 CIRBPQ14011 172 aaKnown RBP8.15□□□□□ -1.1
USP4-205ENST00000431357 DEFB113Q30KQ7 82 aa8.15□□□□□ -1.1
USP4-205ENST00000431357 TMEM101Q96IK0 257 aa8.15□□□□□ -1.1
USP4-205ENST00000431357 PKD1L2Q7Z442 2459 aa8.15□□□□□ -1.1
USP4-205ENST00000431357 IGHV3-38A0A0C4DH36 116 aa8.15□□□□□ -1.11
USP4-205ENST00000431357 RPL13AP40429 203 aaKnown RBP8.15□□□□□ -1.11
USP4-205ENST00000431357 HERVK_113P63121 156 aa8.15□□□□□ -1.11
USP4-205ENST00000431357 FAM19A3Q7Z5A8 133 aa8.15□□□□□ -1.11
USP4-205ENST00000431357 VPS13CQ709C8 3753 aa8.15□□□□□ -1.11
USP4-205ENST00000431357 CELSR1Q9NYQ6 3014 aa8.15□□□□□ -1.11
USP4-205ENST00000431357 TRBV10-1A0A0K0K1A3 114 aa8.14□□□□□ -1.11
USP4-205ENST00000431357 F5H768 121 aa8.14□□□□□ -1.11
USP4-205ENST00000431357 STHQ8IWL8 128 aa8.14□□□□□ -1.11
USP4-205ENST00000431357 IL17DQ8TAD2 202 aa8.14□□□□□ -1.11
USP4-205ENST00000431357 CDKN2A-AS1Q9UH64 79 aa8.14□□□□□ -1.11
USP4-205ENST00000431357 NACAE9PAV3 2078 aa8.14□□□□□ -1.11
USP4-205ENST00000431357 TRBV7-7A0A0K0K1E9 115 aa8.14□□□□□ -1.11
USP4-205ENST00000431357 UQCRQO14949 82 aa8.14□□□□□ -1.11
USP4-205ENST00000431357 COPS9Q8WXC6 57 aa8.14□□□□□ -1.11
USP4-205ENST00000431357 SORL1Q92673 2214 aa8.13□□□□□ -1.11
USP4-205ENST00000431357 FAM240AA0A1B0GVK7 77 aa8.13□□□□□ -1.11
USP4-205ENST00000431357 H3BT86 120 aa8.13□□□□□ -1.11
USP4-205ENST00000431357 RPL36AP83881 106 aaKnown RBP8.13□□□□□ -1.11
USP4-205ENST00000431357 C3orf22Q8N5N4 141 aa8.13□□□□□ -1.11
USP4-205ENST00000431357 NTN5Q8WTR8 489 aaPredicted RBP8.13□□□□□ -1.11
USP4-205ENST00000431357 RPL36ALQ969Q0 106 aaKnown RBP8.13□□□□□ -1.11
USP4-205ENST00000431357 XCL2Q9UBD3 114 aa8.13□□□□□ -1.11
USP4-205ENST00000431357 PRRC2AP48634 2157 aaKnown RBP8.13□□□□□ -1.11
USP4-205ENST00000431357 IGLV5-39A0A0G2JS06 123 aa8.12□□□□□ -1.11
USP4-205ENST00000431357 A8MZ25 164 aa8.12□□□□□ -1.11
USP4-205ENST00000431357 DAZ2Q13117 558 aaKnown RBP8.12□□□□□ -1.11
USP4-205ENST00000431357 ODF3L2Q3SX64 289 aa8.12□□□□□ -1.11
USP4-205ENST00000431357 DAZ4Q86SG3 579 aaKnown RBP8.12□□□□□ -1.11
USP4-205ENST00000431357 C15orf53Q8NAA6 179 aa8.12□□□□□ -1.11
USP4-205ENST00000431357 DAZ3Q9NR90 486 aaKnown RBP8.12□□□□□ -1.11
USP4-205ENST00000431357 TRAV8-4A0A0B4J246 113 aa8.12□□□□□ -1.11
USP4-205ENST00000431357 CMC4P56277 68 aaPredicted RBP8.12□□□□□ -1.11
USP4-205ENST00000431357 C1orf158Q8N1D5 194 aa8.12□□□□□ -1.11
USP4-205ENST00000431357 LINC00526Q96FQ7 95 aa8.12□□□□□ -1.11
USP4-205ENST00000431357 CR1P17927 2039 aa8.11□□□□□ -1.11
USP4-205ENST00000431357 IGHV3OR16-12A0A075B7B8 117 aa8.11□□□□□ -1.11
USP4-205ENST00000431357 TRGV1A0A0A0MS02 117 aa8.11□□□□□ -1.11
USP4-205ENST00000431357 K7EQD1 137 aa8.11□□□□□ -1.11
USP4-205ENST00000431357 C9orf153Q5TBE3 101 aa8.11□□□□□ -1.11
USP4-205ENST00000431357 C2orf82Q6UX34 121 aa8.11□□□□□ -1.11
USP4-205ENST00000431357 KIR2DL5BQ8NHK3 375 aa8.11□□□□□ -1.11
USP4-205ENST00000431357 LST1O00453 97 aa8.11□□□□□ -1.11
USP4-205ENST00000431357 LINC00242Q5T6M2 205 aa8.11□□□□□ -1.11
USP4-205ENST00000431357 Q6ZSV7 163 aa8.11□□□□□ -1.11
USP4-205ENST00000431357 UBE2WQ96B02 151 aa8.11□□□□□ -1.11
USP4-205ENST00000431357 Q96MF0 132 aa8.11□□□□□ -1.11
USP4-205ENST00000431357 NPC2P61916 151 aa8.1□□□□□ -1.11
USP4-205ENST00000431357 COX6A2Q02221 97 aa8.1□□□□□ -1.11
USP4-205ENST00000431357 CACNA1AO00555 2505 aa8.1□□□□□ -1.11
USP4-205ENST00000431357 H7C423 109 aa8.09□□□□□ -1.11
USP4-205ENST00000431357 KRTAP10-9P60411 292 aa8.09□□□□□ -1.11
USP4-205ENST00000431357 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.09□□□□□ -1.11
USP4-205ENST00000431357 USP9XQ93008 2570 aaPredicted RBP8.09□□□□□ -1.11
USP4-205ENST00000431357 LINC00308Q8TCZ7 52 aa8.09□□□□□ -1.11
USP4-205ENST00000431357 Q9H8V8 135 aa8.09□□□□□ -1.11
USP4-205ENST00000431357 LOC107984640A0A0U1RRK4 108 aa8.08□□□□□ -1.12
USP4-205ENST00000431357 SMIM1B2RUZ4 78 aa8.08□□□□□ -1.12
USP4-205ENST00000431357 CCL24O00175 119 aa8.08□□□□□ -1.12
USP4-205ENST00000431357 COL12A1Q99715 3063 aa8.08□□□□□ -1.12
USP4-205ENST00000431357 CFAP46Q8IYW2 2715 aa8.07□□□□□ -1.12
USP4-205ENST00000431357 TEX49A0A1B0GTD5 131 aa8.07□□□□□ -1.12
USP4-205ENST00000431357 CDC42SE2Q9NRR3 84 aa8.07□□□□□ -1.12
USP4-205ENST00000431357 CREBBPQ92793 2442 aa8.07□□□□□ -1.12
USP4-205ENST00000431357 ANKRD17O75179 2603 aaKnown RBP8.07□□□□□ -1.12
USP4-205ENST00000431357 PRB1P04280 392 aa8.06□□□□□ -1.12
USP4-205ENST00000431357 DEFB121Q5J5C9 76 aa8.06□□□□□ -1.12
USP4-205ENST00000431357 NTM-AS1Q6ZSK4 140 aa8.06□□□□□ -1.12
USP4-205ENST00000431357 Q6ZTI0 123 aa8.06□□□□□ -1.12
USP4-205ENST00000431357 CLEC2BQ92478 149 aa8.06□□□□□ -1.12
USP4-205ENST00000431357 CRYGAP11844 174 aa8.06□□□□□ -1.12
USP4-205ENST00000431357 DAND5Q8N907 189 aa8.06□□□□□ -1.12
USP4-205ENST00000431357 CHCHD5Q9BSY4 110 aa8.06□□□□□ -1.12
USP4-205ENST00000431357 TRAV13-1A0A0B4J241 112 aa8.05□□□□□ -1.12
USP4-205ENST00000431357 DNAJC9-AS1A6NH13 148 aa8.05□□□□□ -1.12
USP4-205ENST00000431357 UBE2L6O14933 153 aa8.05□□□□□ -1.12
USP4-205ENST00000431357 ACYP1P07311 99 aa8.05□□□□□ -1.12
USP4-205ENST00000431357 KRTAP1-3Q8IUG1 177 aa8.05□□□□□ -1.12
USP4-205ENST00000431357 C16orf74Q96GX8 76 aa8.05□□□□□ -1.12
USP4-205ENST00000431357 ZNF625Q96I27 306 aaPredicted RBP8.05□□□□□ -1.12
USP4-205ENST00000431357 TMEM243Q9BU79 118 aa8.05□□□□□ -1.12
USP4-205ENST00000431357 COX7A2LO14548 114 aa8.05□□□□□ -1.12
USP4-205ENST00000431357 PRIMA1Q86XR5 153 aa8.05□□□□□ -1.12
USP4-205ENST00000431357 USP9YO00507 2555 aaPredicted RBP8.04□□□□□ -1.12
USP4-205ENST00000431357 FLNCQ14315 2725 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 192.7 ms