RNA–Protein interactions for RNA: ENST00000431146.6

USHBP1-203, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2 BASIC

Gene USHBP1, Length 2,136 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-203ENST00000431146 DEFB4AO15263 64 aa11.84□□□□□ -0.51
USHBP1-203ENST00000431146 TRGV4A0A0C4DH28 118 aa11.84□□□□□ -0.51
USHBP1-203ENST00000431146 RPL36AP83881 106 aaKnown RBP11.84□□□□□ -0.51
USHBP1-203ENST00000431146 RPL36ALQ969Q0 106 aaKnown RBP11.84□□□□□ -0.51
USHBP1-203ENST00000431146 FAM104AQ969W3 186 aa11.84□□□□□ -0.51
USHBP1-203ENST00000431146 H3BRM9 83 aa11.83□□□□□ -0.52
USHBP1-203ENST00000431146 WIPF1O43516 503 aa11.83□□□□□ -0.52
USHBP1-203ENST00000431146 ANK2Q01484 3957 aa11.83□□□□□ -0.52
USHBP1-203ENST00000431146 ERG28Q9UKR5 140 aa11.83□□□□□ -0.52
USHBP1-203ENST00000431146 IGHV4-30-4P0DP06 118 aa11.83□□□□□ -0.52
USHBP1-203ENST00000431146 GAGE6Q13070 117 aa11.83□□□□□ -0.52
USHBP1-203ENST00000431146 TRBV10-1A0A0K0K1A3 114 aa11.82□□□□□ -0.52
USHBP1-203ENST00000431146 APOC4P55056 127 aa11.82□□□□□ -0.52
USHBP1-203ENST00000431146 MAPKAPK5-AS1Q8N8E1 139 aa11.82□□□□□ -0.52
USHBP1-203ENST00000431146 TEX48A0A1B0GUV7 120 aa11.81□□□□□ -0.52
USHBP1-203ENST00000431146 KIR2DL5BQ8NHK3 375 aa11.81□□□□□ -0.52
USHBP1-203ENST00000431146 VCX2Q9H322 139 aa11.81□□□□□ -0.52
USHBP1-203ENST00000431146 A6NDN8 102 aa11.81□□□□□ -0.52
USHBP1-203ENST00000431146 UBE2D3P61077 147 aa11.81□□□□□ -0.52
USHBP1-203ENST00000431146 UBE2D2P62837 147 aa11.81□□□□□ -0.52
USHBP1-203ENST00000431146 FHL2Q14192 279 aa11.81□□□□□ -0.52
USHBP1-203ENST00000431146 UBE2D4Q9Y2X8 147 aa11.81□□□□□ -0.52
USHBP1-203ENST00000431146 KRTAP10-11P60412 298 aa11.8□□□□□ -0.52
USHBP1-203ENST00000431146 NTM-AS1Q6ZSK4 140 aa11.8□□□□□ -0.52
USHBP1-203ENST00000431146 TMEM170BQ5T4T1 132 aa11.8□□□□□ -0.52
USHBP1-203ENST00000431146 PYGO1Q9Y3Y4 419 aa11.8□□□□□ -0.52
USHBP1-203ENST00000431146 SMIM9A6NGZ8 99 aa11.79□□□□□ -0.52
USHBP1-203ENST00000431146 TMEM97Q5BJF2 176 aa11.79□□□□□ -0.52
USHBP1-203ENST00000431146 FAM222AQ5U5X8 452 aa11.79□□□□□ -0.52
USHBP1-203ENST00000431146 A0A0J9YXV3 536 aa11.78□□□□□ -0.52
USHBP1-203ENST00000431146 TRBV6-4A0A1B0GX49 114 aa11.78□□□□□ -0.52
USHBP1-203ENST00000431146 SIVA1O15304 175 aa11.78□□□□□ -0.52
USHBP1-203ENST00000431146 PRADC1Q9BSG0 188 aa11.78□□□□□ -0.52
USHBP1-203ENST00000431146 CHAC1Q9BUX1 264 aa11.78□□□□□ -0.52
USHBP1-203ENST00000431146 LINC00694P0DN24 101 aa11.78□□□□□ -0.52
USHBP1-203ENST00000431146 Q6ZUT4 128 aa11.78□□□□□ -0.52
USHBP1-203ENST00000431146 DAZ4Q86SG3 579 aaKnown RBP11.78□□□□□ -0.52
USHBP1-203ENST00000431146 DAZ3Q9NR90 486 aaKnown RBP11.78□□□□□ -0.52
USHBP1-203ENST00000431146 TRBV25-1A0A075B6N4 114 aa11.77□□□□□ -0.52
USHBP1-203ENST00000431146 IGHV4-28A0A0C4DH34 117 aa11.77□□□□□ -0.52
USHBP1-203ENST00000431146 E9PLD3 99 aa11.77□□□□□ -0.53
USHBP1-203ENST00000431146 RPL24P83731 157 aaKnown RBP11.77□□□□□ -0.53
USHBP1-203ENST00000431146 PAPPA-AS1Q5QFB9 102 aa11.77□□□□□ -0.53
USHBP1-203ENST00000431146 LINC00612Q8N6U2 182 aa11.77□□□□□ -0.53
USHBP1-203ENST00000431146 AMELXQ99217 191 aa11.77□□□□□ -0.53
USHBP1-203ENST00000431146 SPANXA1Q9NS26 97 aa11.77□□□□□ -0.53
USHBP1-203ENST00000431146 NFE4Q86UQ8 179 aa11.75□□□□□ -0.53
USHBP1-203ENST00000431146 RNF183Q96D59 192 aa11.74□□□□□ -0.53
USHBP1-203ENST00000431146 SPCS1Q9Y6A9 102 aa11.74□□□□□ -0.53
USHBP1-203ENST00000431146 IGHV3-64A0A075B6Q5 118 aa11.74□□□□□ -0.53
USHBP1-203ENST00000431146 ZNF22P17026 224 aaPredicted RBP11.74□□□□□ -0.53
USHBP1-203ENST00000431146 SMIM20Q8N5G0 67 aa11.74□□□□□ -0.53
USHBP1-203ENST00000431146 Q8NAQ8 132 aa11.74□□□□□ -0.53
USHBP1-203ENST00000431146 CELA1Q9UNI1 258 aa11.74□□□□□ -0.53
USHBP1-203ENST00000431146 NOTCH1P46531 2555 aa11.73□□□□□ -0.53
USHBP1-203ENST00000431146 A0A1W2PPM0 123 aa11.73□□□□□ -0.53
USHBP1-203ENST00000431146 DGAT2L7PQ6IED9 249 aa11.73□□□□□ -0.53
USHBP1-203ENST00000431146 MYMXA0A1B0GTQ4 84 aa11.72□□□□□ -0.53
USHBP1-203ENST00000431146 TSPEAR-AS2P59090 65 aa11.72□□□□□ -0.53
USHBP1-203ENST00000431146 HERVK_113P61574 105 aa11.72□□□□□ -0.53
USHBP1-203ENST00000431146 LYRM9A8MSI8 78 aa11.72□□□□□ -0.53
USHBP1-203ENST00000431146 H3BUT2 72 aa11.72□□□□□ -0.53
USHBP1-203ENST00000431146 SBSPONQ8IVN8 264 aa11.72□□□□□ -0.53
USHBP1-203ENST00000431146 ZNF815PA8K554 130 aa11.71□□□□□ -0.53
USHBP1-203ENST00000431146 C5orf47Q569G3 176 aa11.71□□□□□ -0.53
USHBP1-203ENST00000431146 SPANXB1Q9NS25 103 aaPredicted RBP11.71□□□□□ -0.53
USHBP1-203ENST00000431146 HIGD1BQ9P298 99 aa11.71□□□□□ -0.53
USHBP1-203ENST00000431146 GYPEP15421 78 aa11.71□□□□□ -0.54
USHBP1-203ENST00000431146 MRPS36P82909 103 aaKnown RBP11.71□□□□□ -0.54
USHBP1-203ENST00000431146 TMEM223A0PJW6 202 aa11.7□□□□□ -0.54
USHBP1-203ENST00000431146 MIFP14174 115 aa11.7□□□□□ -0.54
USHBP1-203ENST00000431146 EGFEM1PQ0D2K5 195 aa11.7□□□□□ -0.54
USHBP1-203ENST00000431146 PLEKHB2Q96CS7 222 aa11.7□□□□□ -0.54
USHBP1-203ENST00000431146 TMEM243Q9BU79 118 aa11.7□□□□□ -0.54
USHBP1-203ENST00000431146 RETNQ9HD89 108 aa11.7□□□□□ -0.54
USHBP1-203ENST00000431146 DNAH3Q8TD57 4116 aa11.7□□□□□ -0.54
USHBP1-203ENST00000431146 A0A096LPF7 62 aa11.69□□□□□ -0.54
USHBP1-203ENST00000431146 FABP2P12104 132 aa11.69□□□□□ -0.54
USHBP1-203ENST00000431146 GCSHP23434 173 aa11.69□□□□□ -0.54
USHBP1-203ENST00000431146 UBE2L6O14933 153 aa11.69□□□□□ -0.54
USHBP1-203ENST00000431146 DAD1P61803 113 aa11.69□□□□□ -0.54
USHBP1-203ENST00000431146 TIMM21Q9BVV7 248 aa11.69□□□□□ -0.54
USHBP1-203ENST00000431146 A0A0J9YY99 117 aa11.68□□□□□ -0.54
USHBP1-203ENST00000431146 F8W1H4 67 aa11.68□□□□□ -0.54
USHBP1-203ENST00000431146 A4D1N5 150 aa11.68□□□□□ -0.54
USHBP1-203ENST00000431146 UBE2D1P51668 147 aa11.68□□□□□ -0.54
USHBP1-203ENST00000431146 ANAPC13Q9BS18 74 aa11.68□□□□□ -0.54
USHBP1-203ENST00000431146 PRO0255Q9UI72 69 aa11.68□□□□□ -0.54
USHBP1-203ENST00000431146 J3QQQ9 107 aa11.67□□□□□ -0.54
USHBP1-203ENST00000431146 FXYD2P54710 66 aa11.67□□□□□ -0.54
USHBP1-203ENST00000431146 SCGB1D4Q6XE38 83 aa11.67□□□□□ -0.54
USHBP1-203ENST00000431146 TRBV6-8A0A0A6YYG3 113 aa11.66□□□□□ -0.54
USHBP1-203ENST00000431146 TRAV8-3A0A0A6YYJ7 113 aa11.66□□□□□ -0.54
USHBP1-203ENST00000431146 TINCRA0A1B0GVN0 87 aa11.66□□□□□ -0.54
USHBP1-203ENST00000431146 B5MCH6 92 aa11.66□□□□□ -0.54
USHBP1-203ENST00000431146 PAX4O43316 350 aa11.66□□□□□ -0.54
USHBP1-203ENST00000431146 NBEAL1Q6ZS30 2694 aa11.66□□□□□ -0.54
USHBP1-203ENST00000431146 TRAV13-1A0A0B4J241 112 aa11.65□□□□□ -0.54
USHBP1-203ENST00000431146 SPINK8P0C7L1 97 aa11.65□□□□□ -0.54
USHBP1-203ENST00000431146 HTN3P15516 51 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms