RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 FSHBP01225 129 aa7.98□□□□□ -1.13
LIMS1-207ENST00000422797 PRB1P04280 392 aa7.98□□□□□ -1.13
LIMS1-207ENST00000422797 NHLRC4P0CG21 123 aaPredicted RBP7.98□□□□□ -1.13
LIMS1-207ENST00000422797 DAZ2Q13117 558 aaKnown RBP7.98□□□□□ -1.13
LIMS1-207ENST00000422797 FAM222AQ5U5X8 452 aa7.98□□□□□ -1.13
LIMS1-207ENST00000422797 DAZ4Q86SG3 579 aaKnown RBP7.98□□□□□ -1.13
LIMS1-207ENST00000422797 Q8N2B8 174 aa7.98□□□□□ -1.13
LIMS1-207ENST00000422797 DYNLRB2Q8TF09 96 aa7.98□□□□□ -1.13
LIMS1-207ENST00000422797 C4orf3Q8WVX3 66 aa7.98□□□□□ -1.13
LIMS1-207ENST00000422797 DAZ3Q9NR90 486 aaKnown RBP7.98□□□□□ -1.13
LIMS1-207ENST00000422797 CDKN2A-AS1Q9UH64 79 aa7.98□□□□□ -1.13
LIMS1-207ENST00000422797 RBMY1BA6NDE4 496 aaKnown RBP7.97□□□□□ -1.13
LIMS1-207ENST00000422797 RBMY1EA6NEQ0 496 aaKnown RBP7.97□□□□□ -1.13
LIMS1-207ENST00000422797 RBMY1DP0C7P1 496 aaKnown RBP7.97□□□□□ -1.13
LIMS1-207ENST00000422797 PROK1P58294 105 aa7.97□□□□□ -1.13
LIMS1-207ENST00000422797 RPL36AP83881 106 aaKnown RBP7.97□□□□□ -1.13
LIMS1-207ENST00000422797 CEMP1Q6PRD7 247 aaPredicted RBP7.97□□□□□ -1.13
LIMS1-207ENST00000422797 RPL36ALQ969Q0 106 aaKnown RBP7.97□□□□□ -1.13
LIMS1-207ENST00000422797 MAP6D1Q9H9H5 199 aa7.97□□□□□ -1.13
LIMS1-207ENST00000422797 HECTD1Q9ULT8 2610 aa7.96□□□□□ -1.13
LIMS1-207ENST00000422797 ATMQ13315 3056 aa7.96□□□□□ -1.13
LIMS1-207ENST00000422797 CRLF1O75462 422 aa7.96□□□□□ -1.14
LIMS1-207ENST00000422797 ATP5G1P05496 136 aa7.96□□□□□ -1.14
LIMS1-207ENST00000422797 HTN1P15515 57 aa7.96□□□□□ -1.14
LIMS1-207ENST00000422797 SHISA2Q6UWI4 295 aa7.96□□□□□ -1.14
LIMS1-207ENST00000422797 C10orf99Q6UWK7 81 aa7.96□□□□□ -1.14
LIMS1-207ENST00000422797 ZNF843Q8N446 348 aa7.96□□□□□ -1.14
LIMS1-207ENST00000422797 CLEC2BQ92478 149 aa7.96□□□□□ -1.14
LIMS1-207ENST00000422797 TACC2O95359 2948 aa7.96□□□□□ -1.14
LIMS1-207ENST00000422797 INAFM2P0DMQ5 153 aa7.95□□□□□ -1.14
LIMS1-207ENST00000422797 RNASE13Q5GAN3 156 aaKnown RBP7.95□□□□□ -1.14
LIMS1-207ENST00000422797 Q6ZSN1 163 aa7.95□□□□□ -1.14
LIMS1-207ENST00000422797 Q9H8V8 135 aa7.95□□□□□ -1.14
LIMS1-207ENST00000422797 IGHV3OR16-12A0A075B7B8 117 aa7.94□□□□□ -1.14
LIMS1-207ENST00000422797 TRAV13-2A0A0B4J235 113 aa7.94□□□□□ -1.14
LIMS1-207ENST00000422797 CMC4P56277 68 aaPredicted RBP7.94□□□□□ -1.14
LIMS1-207ENST00000422797 LINC00242Q5T6M2 205 aa7.94□□□□□ -1.14
LIMS1-207ENST00000422797 DAND5Q8N907 189 aa7.94□□□□□ -1.14
LIMS1-207ENST00000422797 IL17DQ8TAD2 202 aa7.94□□□□□ -1.14
LIMS1-207ENST00000422797 CITED2Q99967 270 aaPredicted RBP7.94□□□□□ -1.14
LIMS1-207ENST00000422797 KRTAP4-8Q9BYQ9 185 aa7.94□□□□□ -1.14
LIMS1-207ENST00000422797 A0A096LNT2 108 aa7.93□□□□□ -1.14
LIMS1-207ENST00000422797 SMIM1B2RUZ4 78 aa7.93□□□□□ -1.14
LIMS1-207ENST00000422797 K7EQD1 137 aa7.93□□□□□ -1.14
LIMS1-207ENST00000422797 SLURP1P55000 103 aa7.93□□□□□ -1.14
LIMS1-207ENST00000422797 LINC00643Q86TS7 51 aa7.93□□□□□ -1.14
LIMS1-207ENST00000422797 ZNF625Q96I27 306 aaPredicted RBP7.93□□□□□ -1.14
LIMS1-207ENST00000422797 MED13LQ71F56 2210 aa7.93□□□□□ -1.14
LIMS1-207ENST00000422797 DCHS2Q6V1P9 2916 aa7.93□□□□□ -1.14
LIMS1-207ENST00000422797 LRBAP50851 2863 aa7.93□□□□□ -1.14
LIMS1-207ENST00000422797 B5MCH6 92 aa7.93□□□□□ -1.14
LIMS1-207ENST00000422797 NPC2P61916 151 aa7.93□□□□□ -1.14
LIMS1-207ENST00000422797 MEIG1Q5JSS6 88 aa7.93□□□□□ -1.14
LIMS1-207ENST00000422797 PRIMA1Q86XR5 153 aa7.93□□□□□ -1.14
LIMS1-207ENST00000422797 COL6A6A6NMZ7 2263 aa7.92□□□□□ -1.14
LIMS1-207ENST00000422797 HIVEP3Q5T1R4 2406 aa7.92□□□□□ -1.14
LIMS1-207ENST00000422797 CXCL5P42830 114 aa7.92□□□□□ -1.14
LIMS1-207ENST00000422797 DEFB114Q30KQ6 69 aa7.92□□□□□ -1.14
LIMS1-207ENST00000422797 TMEM86BQ8N661 226 aa7.92□□□□□ -1.14
LIMS1-207ENST00000422797 TMEM126AQ9H061 195 aa7.92□□□□□ -1.14
LIMS1-207ENST00000422797 PRRC2AP48634 2157 aaKnown RBP7.91□□□□□ -1.14
LIMS1-207ENST00000422797 IGHV3-38A0A0C4DH36 116 aa7.91□□□□□ -1.14
LIMS1-207ENST00000422797 A8MZ25 164 aa7.91□□□□□ -1.14
LIMS1-207ENST00000422797 SPTBN1Q01082 2364 aaKnown RBP7.91□□□□□ -1.14
LIMS1-207ENST00000422797 PTPN13Q12923 2485 aa7.91□□□□□ -1.14
LIMS1-207ENST00000422797 HIST2H2BCQ6DN03 193 aa7.9□□□□□ -1.14
LIMS1-207ENST00000422797 HIST2H2BDQ6DRA6 164 aa7.9□□□□□ -1.14
LIMS1-207ENST00000422797 STHQ8IWL8 128 aa7.9□□□□□ -1.14
LIMS1-207ENST00000422797 TMEM243Q9BU79 118 aa7.9□□□□□ -1.14
LIMS1-207ENST00000422797 CDC42SE2Q9NRR3 84 aa7.9□□□□□ -1.14
LIMS1-207ENST00000422797 SS18L2Q9UHA2 77 aa7.9□□□□□ -1.14
LIMS1-207ENST00000422797 F5H768 121 aa7.89□□□□□ -1.15
LIMS1-207ENST00000422797 UBE2L6O14933 153 aa7.89□□□□□ -1.15
LIMS1-207ENST00000422797 CRPP02741 224 aa7.89□□□□□ -1.15
LIMS1-207ENST00000422797 RPL28P46779 137 aaKnown RBP7.89□□□□□ -1.15
LIMS1-207ENST00000422797 COX6A2Q02221 97 aa7.89□□□□□ -1.15
LIMS1-207ENST00000422797 SDIM1Q6ZPB5 146 aa7.89□□□□□ -1.15
LIMS1-207ENST00000422797 TRGV1A0A0A0MS02 117 aa7.88□□□□□ -1.15
LIMS1-207ENST00000422797 CCDC179H3BU77 68 aa7.88□□□□□ -1.15
LIMS1-207ENST00000422797 Q6ZSV7 163 aa7.88□□□□□ -1.15
LIMS1-207ENST00000422797 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.88□□□□□ -1.15
LIMS1-207ENST00000422797 DOPEY2Q9Y3R5 2298 aa7.88□□□□□ -1.15
LIMS1-207ENST00000422797 USP9XQ93008 2570 aaPredicted RBP7.88□□□□□ -1.15
LIMS1-207ENST00000422797 H0YGX0 51 aa7.88□□□□□ -1.15
LIMS1-207ENST00000422797 BAALC-AS2P0C853 105 aa7.88□□□□□ -1.15
LIMS1-207ENST00000422797 Q9UF83 564 aa7.88□□□□□ -1.15
LIMS1-207ENST00000422797 TRAV13-1A0A0B4J241 112 aa7.87□□□□□ -1.15
LIMS1-207ENST00000422797 IGHV4-31P0DP07 118 aa7.87□□□□□ -1.15
LIMS1-207ENST00000422797 DEFB136Q30KP8 78 aa7.87□□□□□ -1.15
LIMS1-207ENST00000422797 LCE2CQ5TA81 110 aa7.87□□□□□ -1.15
LIMS1-207ENST00000422797 SOSTDC1Q6X4U4 206 aa7.87□□□□□ -1.15
LIMS1-207ENST00000422797 C16orf74Q96GX8 76 aa7.87□□□□□ -1.15
LIMS1-207ENST00000422797 NACAE9PAV3 2078 aa7.86□□□□□ -1.15
LIMS1-207ENST00000422797 TRBV6-4A0A1B0GX49 114 aa7.86□□□□□ -1.15
LIMS1-207ENST00000422797 ODF3L2Q3SX64 289 aa7.86□□□□□ -1.15
LIMS1-207ENST00000422797 C1orf158Q8N1D5 194 aa7.86□□□□□ -1.15
LIMS1-207ENST00000422797 LRRC75A-AS1Q8N1F1 130 aa7.86□□□□□ -1.15
LIMS1-207ENST00000422797 COX7B2Q8TF08 81 aa7.86□□□□□ -1.15
LIMS1-207ENST00000422797 FAM110AQ9BQ89 295 aa7.86□□□□□ -1.15
LIMS1-207ENST00000422797 XCL2Q9UBD3 114 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms