RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 IGHV4-38-2P0DP08 117 aa7.71□□□□□ -1.18
USP54-204ENST00000422491 RPS28P62857 69 aaKnown RBP7.71□□□□□ -1.18
USP54-204ENST00000422491 C5orf47Q569G3 176 aa7.71□□□□□ -1.18
USP54-204ENST00000422491 SPTA1P02549 2419 aa7.71□□□□□ -1.18
USP54-204ENST00000422491 NBASA2RRP1 2371 aa7.71□□□□□ -1.18
USP54-204ENST00000422491 SORL1Q92673 2214 aa7.71□□□□□ -1.18
USP54-204ENST00000422491 VPS13CQ709C8 3753 aa7.71□□□□□ -1.18
USP54-204ENST00000422491 PRM2P04554 102 aa7.71□□□□□ -1.18
USP54-204ENST00000422491 PIK3CD-AS1Q5SR53 167 aa7.71□□□□□ -1.18
USP54-204ENST00000422491 CYSTM1Q9H1C7 97 aa7.71□□□□□ -1.18
USP54-204ENST00000422491 SMIM9A6NGZ8 99 aa7.7□□□□□ -1.18
USP54-204ENST00000422491 K7ENP7 123 aa7.7□□□□□ -1.18
USP54-204ENST00000422491 MALP21145 153 aa7.7□□□□□ -1.18
USP54-204ENST00000422491 PSMB8P28062 276 aa7.7□□□□□ -1.18
USP54-204ENST00000422491 FAM19A3Q7Z5A8 133 aa7.7□□□□□ -1.18
USP54-204ENST00000422491 Q9HAA7 133 aa7.7□□□□□ -1.18
USP54-204ENST00000422491 hADV29S1A0JD25 119 aa7.69□□□□□ -1.18
USP54-204ENST00000422491 IGHV3-53P01767 116 aa7.69□□□□□ -1.18
USP54-204ENST00000422491 HIST2H2BCQ6DN03 193 aa7.69□□□□□ -1.18
USP54-204ENST00000422491 HIST2H2BDQ6DRA6 164 aa7.69□□□□□ -1.18
USP54-204ENST00000422491 RPL28P46779 137 aaKnown RBP7.69□□□□□ -1.18
USP54-204ENST00000422491 ATP5J2P56134 94 aa7.69□□□□□ -1.18
USP54-204ENST00000422491 PRIMA1Q86XR5 153 aa7.69□□□□□ -1.18
USP54-204ENST00000422491 AKAP6Q13023 2319 aa7.68□□□□□ -1.18
USP54-204ENST00000422491 PTPRQQ9UMZ3 2332 aa7.68□□□□□ -1.18
USP54-204ENST00000422491 RPL18AQ02543 176 aaKnown RBP7.68□□□□□ -1.18
USP54-204ENST00000422491 ZNF415Q09FC8 603 aa7.68□□□□□ -1.18
USP54-204ENST00000422491 DGAT2L7PQ6IED9 249 aa7.68□□□□□ -1.18
USP54-204ENST00000422491 NBL1P41271 181 aa7.67□□□□□ -1.18
USP54-204ENST00000422491 C9orf129Q5T035 196 aaKnown RBP7.67□□□□□ -1.18
USP54-204ENST00000422491 C10orf99Q6UWK7 81 aa7.67□□□□□ -1.18
USP54-204ENST00000422491 F5H768 121 aa7.67□□□□□ -1.18
USP54-204ENST00000422491 HOXD3P31249 432 aaPredicted RBP7.67□□□□□ -1.18
USP54-204ENST00000422491 PIMREGQ9BSJ6 248 aa7.67□□□□□ -1.18
USP54-204ENST00000422491 COL12A1Q99715 3063 aa7.67□□□□□ -1.18
USP54-204ENST00000422491 RBMY1BA6NDE4 496 aaKnown RBP7.66□□□□□ -1.18
USP54-204ENST00000422491 RBMY1EA6NEQ0 496 aaKnown RBP7.66□□□□□ -1.18
USP54-204ENST00000422491 A8MTW9 85 aa7.66□□□□□ -1.18
USP54-204ENST00000422491 PF4P02776 101 aa7.66□□□□□ -1.18
USP54-204ENST00000422491 RBMY1DP0C7P1 496 aaKnown RBP7.66□□□□□ -1.18
USP54-204ENST00000422491 SYNJ2BPP57105 145 aa7.66□□□□□ -1.18
USP54-204ENST00000422491 TRAV13-1A0A0B4J241 112 aa7.66□□□□□ -1.18
USP54-204ENST00000422491 C11orf72Q8NBR9 251 aa7.66□□□□□ -1.18
USP54-204ENST00000422491 UPK3BQ9BT76 320 aa7.66□□□□□ -1.18
USP54-204ENST00000422491 TRAV13-2A0A0B4J235 113 aa7.65□□□□□ -1.18
USP54-204ENST00000422491 DNAL4O96015 105 aa7.65□□□□□ -1.18
USP54-204ENST00000422491 Q6JHZ5 121 aa7.65□□□□□ -1.18
USP54-204ENST00000422491 LINC00337Q8N6G1 96 aa7.65□□□□□ -1.18
USP54-204ENST00000422491 OBSCN-AS1Q96MR7 158 aa7.65□□□□□ -1.18
USP54-204ENST00000422491 IGKV2-28A0A075B6P5 120 aa7.65□□□□□ -1.19
USP54-204ENST00000422491 A0A087WYN8 130 aa7.65□□□□□ -1.19
USP54-204ENST00000422491 IGHV4-61A0A0C4DH41 118 aa7.65□□□□□ -1.19
USP54-204ENST00000422491 IGKV2D-28P01615 120 aa7.65□□□□□ -1.19
USP54-204ENST00000422491 TMEM258P61165 79 aa7.65□□□□□ -1.19
USP54-204ENST00000422491 C14orf132Q9NPU4 83 aa7.65□□□□□ -1.19
USP54-204ENST00000422491 LINC00846Q9NV44 126 aa7.65□□□□□ -1.19
USP54-204ENST00000422491 CEP295Q9C0D2 2601 aa7.64□□□□□ -1.19
USP54-204ENST00000422491 IGKV3D-7A0A0C4DH55 119 aa7.64□□□□□ -1.19
USP54-204ENST00000422491 RS1O15537 224 aa7.64□□□□□ -1.19
USP54-204ENST00000422491 CRPP02741 224 aa7.64□□□□□ -1.19
USP54-204ENST00000422491 KLRB1Q12918 225 aa7.64□□□□□ -1.19
USP54-204ENST00000422491 SERP2Q8N6R1 65 aa7.64□□□□□ -1.19
USP54-204ENST00000422491 OR13C6PQ8NH95 151 aa7.64□□□□□ -1.19
USP54-204ENST00000422491 KIR2DL5BQ8NHK3 375 aa7.64□□□□□ -1.19
USP54-204ENST00000422491 DPH3Q96FX2 82 aa7.64□□□□□ -1.19
USP54-204ENST00000422491 Q96MF0 132 aa7.64□□□□□ -1.19
USP54-204ENST00000422491 OVOL2Q9BRP0 275 aa7.64□□□□□ -1.19
USP54-204ENST00000422491 SPTBN4Q9H254 2564 aa7.63□□□□□ -1.19
USP54-204ENST00000422491 TMEM89A2RUT3 159 aa7.63□□□□□ -1.19
USP54-204ENST00000422491 DEFB131AP59861 70 aa7.63□□□□□ -1.19
USP54-204ENST00000422491 LINC01561Q8N1V8 128 aa7.63□□□□□ -1.19
USP54-204ENST00000422491 A0A087WVE0 104 aa7.63□□□□□ -1.19
USP54-204ENST00000422491 SMIM11BQ8TCY0 68 aa7.62□□□□□ -1.19
USP54-204ENST00000422491 OXTP01178 125 aa7.62□□□□□ -1.19
USP54-204ENST00000422491 NTM-AS1Q6ZSK4 140 aa7.62□□□□□ -1.19
USP54-204ENST00000422491 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.62□□□□□ -1.191e-6■■□□□ 14.5
USP54-204ENST00000422491 SND1-IT1Q9HBX3 110 aa7.61□□□□□ -1.19
USP54-204ENST00000422491 CDC42SE2Q9NRR3 84 aa7.61□□□□□ -1.19
USP54-204ENST00000422491 MIR7-3HGQ8N6C7 128 aa7.61□□□□□ -1.19
USP54-204ENST00000422491 CRYBG3Q68DQ2 2970 aa7.61□□□□□ -1.19
USP54-204ENST00000422491 USP17L23D6RBM5 183 aa7.6□□□□□ -1.19
USP54-204ENST00000422491 WIPF1O43516 503 aa7.6□□□□□ -1.19
USP54-204ENST00000422491 H0YGX0 51 aa7.59□□□□□ -1.19
USP54-204ENST00000422491 ATRXP46100 2492 aa7.59□□□□□ -1.19
USP54-204ENST00000422491 AVPP01185 164 aa7.59□□□□□ -1.19
USP54-204ENST00000422491 DSCR8Q96T75 97 aa7.59□□□□□ -1.19
USP54-204ENST00000422491 HIVEP3Q5T1R4 2406 aa7.59□□□□□ -1.2
USP54-204ENST00000422491 CREBBPQ92793 2442 aa7.59□□□□□ -1.2
USP54-204ENST00000422491 NCR3O14931 201 aa7.58□□□□□ -1.2
USP54-204ENST00000422491 LECT2O14960 151 aa7.58□□□□□ -1.2
USP54-204ENST00000422491 IGHV4-59P01825 116 aa7.58□□□□□ -1.2
USP54-204ENST00000422491 SS18Q15532 418 aa7.58□□□□□ -1.2
USP54-204ENST00000422491 C10orf105Q8TEF2 133 aa7.58□□□□□ -1.2
USP54-204ENST00000422491 CCL18P55774 89 aa7.57□□□□□ -1.2
USP54-204ENST00000422491 COX7B2Q8TF08 81 aa7.57□□□□□ -1.2
USP54-204ENST00000422491 MSMBP08118 114 aa7.57□□□□□ -1.2
USP54-204ENST00000422491 RPL36AP83881 106 aaKnown RBP7.57□□□□□ -1.2
USP54-204ENST00000422491 RPL36ALQ969Q0 106 aaKnown RBP7.57□□□□□ -1.2
USP54-204ENST00000422491 PIEZO1Q92508 2521 aa7.56□□□□□ -1.2
USP54-204ENST00000422491 TRBV10-1A0A0K0K1A3 114 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms