RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 WNK1Q9H4A3 2382 aa5.98□□□□□ -1.45
USP54-203ENST00000418501 G3V4G9 280 aa5.98□□□□□ -1.45
USP54-203ENST00000418501 H3BNG1 76 aa5.98□□□□□ -1.45
USP54-203ENST00000418501 CRPP02741 224 aa5.98□□□□□ -1.45
USP54-203ENST00000418501 HERV-K104P63124 156 aa5.98□□□□□ -1.45
USP54-203ENST00000418501 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.97□□□□□ -1.45
USP54-203ENST00000418501 APOMO95445 188 aa5.97□□□□□ -1.45
USP54-203ENST00000418501 PRM2P04554 102 aa5.97□□□□□ -1.45
USP54-203ENST00000418501 VAMP3Q15836 100 aa5.97□□□□□ -1.45
USP54-203ENST00000418501 TRAV13-1A0A0B4J241 112 aa5.97□□□□□ -1.45
USP54-203ENST00000418501 A0A0J9YXV3 536 aa5.97□□□□□ -1.45
USP54-203ENST00000418501 MPV17L2Q567V2 206 aa5.97□□□□□ -1.45
USP54-203ENST00000418501 TCTAP57738 103 aa5.97□□□□□ -1.45
USP54-203ENST00000418501 Q6ZSN1 163 aa5.97□□□□□ -1.45
USP54-203ENST00000418501 IGHV1-58A0A0C4DH39 117 aa5.96□□□□□ -1.45
USP54-203ENST00000418501 VSIG2Q96IQ7 327 aa5.96□□□□□ -1.45
USP54-203ENST00000418501 TMEM223A0PJW6 202 aa5.96□□□□□ -1.46
USP54-203ENST00000418501 PLAC8L1A1L4L8 177 aa5.96□□□□□ -1.46
USP54-203ENST00000418501 K7ERU9 68 aa5.96□□□□□ -1.46
USP54-203ENST00000418501 BVES-AS1Q5T3Y7 98 aa5.96□□□□□ -1.46
USP54-203ENST00000418501 C11orf45Q8TAV5 145 aa5.96□□□□□ -1.46
USP54-203ENST00000418501 SORL1Q92673 2214 aa5.96□□□□□ -1.46
USP54-203ENST00000418501 CFAP161Q6P656 301 aa5.96□□□□□ -1.46
USP54-203ENST00000418501 Q6ZUT4 128 aa5.96□□□□□ -1.46
USP54-203ENST00000418501 RAB37Q96AX2 223 aa5.96□□□□□ -1.46
USP54-203ENST00000418501 C2CD3Q4AC94 2353 aa5.96□□□□□ -1.46
USP54-203ENST00000418501 MEIG1Q5JSS6 88 aa5.95□□□□□ -1.46
USP54-203ENST00000418501 TEX15Q9BXT5 2789 aa5.95□□□□□ -1.46
USP54-203ENST00000418501 ZNF22P17026 224 aaPredicted RBP5.95□□□□□ -1.46
USP54-203ENST00000418501 LELP1Q5T871 98 aa5.95□□□□□ -1.46
USP54-203ENST00000418501 C15orf53Q8NAA6 179 aa5.95□□□□□ -1.46
USP54-203ENST00000418501 DEFB104AQ8WTQ1 72 aa5.95□□□□□ -1.46
USP54-203ENST00000418501 NDUFA12Q9UI09 145 aa5.95□□□□□ -1.46
USP54-203ENST00000418501 A0A1B0GUV1 79 aa5.95□□□□□ -1.46
USP54-203ENST00000418501 FABP2P12104 132 aa5.95□□□□□ -1.46
USP54-203ENST00000418501 IFITM1P13164 125 aa5.95□□□□□ -1.46
USP54-203ENST00000418501 MALP21145 153 aa5.95□□□□□ -1.46
USP54-203ENST00000418501 PCP2Q8IVA1 136 aa5.95□□□□□ -1.46
USP54-203ENST00000418501 TP73-AS1Q9UF72 201 aa5.95□□□□□ -1.46
USP54-203ENST00000418501 F8P00451 2351 aa5.95□□□□□ -1.46
USP54-203ENST00000418501 CEND1Q8N111 149 aa5.95□□□□□ -1.46
USP54-203ENST00000418501 Q8NAQ8 132 aa5.95□□□□□ -1.46
USP54-203ENST00000418501 A0A0J9YY99 117 aa5.94□□□□□ -1.46
USP54-203ENST00000418501 UBE2D1P51668 147 aa5.94□□□□□ -1.46
USP54-203ENST00000418501 CDC42SE2Q9NRR3 84 aa5.94□□□□□ -1.46
USP54-203ENST00000418501 FN1P02751 2386 aaKnown RBP5.94□□□□□ -1.46
USP54-203ENST00000418501 AGRNO00468 2067 aa5.94□□□□□ -1.46
USP54-203ENST00000418501 TRAV10A0A0B4J240 114 aa5.94□□□□□ -1.46
USP54-203ENST00000418501 SAMD5Q5TGI4 173 aa5.94□□□□□ -1.46
USP54-203ENST00000418501 LINC01561Q8N1V8 128 aa5.94□□□□□ -1.46
USP54-203ENST00000418501 SPANXB1Q9NS25 103 aaPredicted RBP5.94□□□□□ -1.46
USP54-203ENST00000418501 FBN2P35556 2912 aa5.94□□□□□ -1.46
USP54-203ENST00000418501 IGLV4-69A0A075B6H9 119 aa5.94□□□□□ -1.46
USP54-203ENST00000418501 IGKV3OR2-268A0A0C4DH90 116 aa5.94□□□□□ -1.46
USP54-203ENST00000418501 SCGB1A1P11684 91 aa5.94□□□□□ -1.46
USP54-203ENST00000418501 RMI2Q96E14 147 aa5.94□□□□□ -1.46
USP54-203ENST00000418501 CXCL5P42830 114 aa5.93□□□□□ -1.46
USP54-203ENST00000418501 A0A0J9YXY3 114 aa5.93□□□□□ -1.46
USP54-203ENST00000418501 TIMM17BO60830 172 aa5.93□□□□□ -1.46
USP54-203ENST00000418501 COX6CP09669 75 aa5.93□□□□□ -1.46
USP54-203ENST00000418501 OPRPNQ99935 248 aaPredicted RBP5.92□□□□□ -1.46
USP54-203ENST00000418501 DEFB4AO15263 64 aa5.92□□□□□ -1.46
USP54-203ENST00000418501 FAM19A3Q7Z5A8 133 aa5.92□□□□□ -1.46
USP54-203ENST00000418501 PRIMA1Q86XR5 153 aa5.92□□□□□ -1.46
USP54-203ENST00000418501 MUC4Q99102 2169 aa5.92□□□□□ -1.46
USP54-203ENST00000418501 SNCGO76070 127 aa5.92□□□□□ -1.46
USP54-203ENST00000418501 ANGP03950 147 aaKnown RBP5.92□□□□□ -1.46
USP54-203ENST00000418501 Q1RN00 199 aa5.92□□□□□ -1.46
USP54-203ENST00000418501 IGHV3-30-3P0DP02 117 aa5.92□□□□□ -1.46
USP54-203ENST00000418501 TM2D2Q9BX73 214 aa5.92□□□□□ -1.46
USP54-203ENST00000418501 SPINK8P0C7L1 97 aa5.91□□□□□ -1.46
USP54-203ENST00000418501 C6orf226Q5I0X4 101 aa5.91□□□□□ -1.46
USP54-203ENST00000418501 GCN1Q92616 2671 aaKnown RBP5.91□□□□□ -1.46
USP54-203ENST00000418501 DEFB131BA0A096LNP1 70 aa5.91□□□□□ -1.46
USP54-203ENST00000418501 CKS1BP61024 79 aa5.91□□□□□ -1.46
USP54-203ENST00000418501 SBSPONQ8IVN8 264 aa5.91□□□□□ -1.46
USP54-203ENST00000418501 NHP2Q9NX24 153 aaKnown RBP5.91□□□□□ -1.46
USP54-203ENST00000418501 TRAV8-4A0A0B4J246 113 aa5.91□□□□□ -1.46
USP54-203ENST00000418501 GAGE10A6NGK3 116 aa5.91□□□□□ -1.46
USP54-203ENST00000418501 TOMM7Q9P0U1 55 aa5.91□□□□□ -1.46
USP54-203ENST00000418501 PDZD2O15018 2839 aa5.9□□□□□ -1.46
USP54-203ENST00000418501 IGHV3-64A0A075B6Q5 118 aa5.9□□□□□ -1.46
USP54-203ENST00000418501 LOC100131303A0A0U1RQF7 123 aa5.9□□□□□ -1.46
USP54-203ENST00000418501 SCGB1C2P0DMR2 95 aa5.9□□□□□ -1.46
USP54-203ENST00000418501 CCL18P55774 89 aa5.9□□□□□ -1.46
USP54-203ENST00000418501 RNASE13Q5GAN3 156 aaKnown RBP5.9□□□□□ -1.46
USP54-203ENST00000418501 CEMP1Q6PRD7 247 aaPredicted RBP5.9□□□□□ -1.46
USP54-203ENST00000418501 IGLV5-45A0A087WSX0 123 aa5.9□□□□□ -1.46
USP54-203ENST00000418501 ZFAND6Q6FIF0 208 aa5.9□□□□□ -1.46
USP54-203ENST00000418501 DCHS2Q6V1P9 2916 aa5.9□□□□□ -1.47
USP54-203ENST00000418501 COX7A2LO14548 114 aa5.9□□□□□ -1.47
USP54-203ENST00000418501 NDUFA1O15239 70 aa5.9□□□□□ -1.47
USP54-203ENST00000418501 NHLRC4P0CG21 123 aaPredicted RBP5.9□□□□□ -1.47
USP54-203ENST00000418501 KRTAP10-11P60412 298 aa5.9□□□□□ -1.47
USP54-203ENST00000418501 C2orf91Q6ZV80 131 aa5.9□□□□□ -1.47
USP54-203ENST00000418501 COX7B2Q8TF08 81 aa5.9□□□□□ -1.47
USP54-203ENST00000418501 TENM4Q6N022 2769 aa5.9□□□□□ -1.47
USP54-203ENST00000418501 IGKV2D-26A0A0A0MRZ7 120 aa5.9□□□□□ -1.47
USP54-203ENST00000418501 C9orf118A6NHY6 69 aa5.9□□□□□ -1.47
USP54-203ENST00000418501 LINC00694P0DN24 101 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms