RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 DEFB104AQ8WTQ1 72 aa10.65□□□□□ -0.7
USP4-203ENST00000415188 MRPL16Q9NX20 251 aaKnown RBP10.65□□□□□ -0.7
USP4-203ENST00000415188 TSPEAR-AS2P59090 65 aa10.64□□□□□ -0.71
USP4-203ENST00000415188 COTL1Q14019 142 aa10.64□□□□□ -0.71
USP4-203ENST00000415188 C1orf158Q8N1D5 194 aa10.64□□□□□ -0.71
USP4-203ENST00000415188 OPRPNQ99935 248 aaPredicted RBP10.64□□□□□ -0.71
USP4-203ENST00000415188 CHCHD7Q9BUK0 85 aa10.64□□□□□ -0.71
USP4-203ENST00000415188 TIMM21Q9BVV7 248 aa10.64□□□□□ -0.71
USP4-203ENST00000415188 XCL2Q9UBD3 114 aa10.64□□□□□ -0.71
USP4-203ENST00000415188 LYRM7Q5U5X0 104 aa10.63□□□□□ -0.71
USP4-203ENST00000415188 Q6ZSN1 163 aa10.63□□□□□ -0.71
USP4-203ENST00000415188 TMEM263Q8WUH6 116 aaKnown RBP10.63□□□□□ -0.71
USP4-203ENST00000415188 A0A0J9YXV3 536 aa10.62□□□□□ -0.71
USP4-203ENST00000415188 TRBV10-1A0A0K0K1A3 114 aa10.62□□□□□ -0.71
USP4-203ENST00000415188 UBE2D4Q9Y2X8 147 aa10.62□□□□□ -0.71
USP4-203ENST00000415188 TINCRA0A1B0GVN0 87 aa10.61□□□□□ -0.71
USP4-203ENST00000415188 F8W1H4 67 aa10.61□□□□□ -0.71
USP4-203ENST00000415188 CIDEAO60543 219 aa10.61□□□□□ -0.71
USP4-203ENST00000415188 IGHV3-30P01768 117 aa10.61□□□□□ -0.71
USP4-203ENST00000415188 PRM2P04554 102 aa10.61□□□□□ -0.71
USP4-203ENST00000415188 IGHV3-30-5P0DP03 117 aa10.61□□□□□ -0.71
USP4-203ENST00000415188 AZU1P20160 251 aa10.61□□□□□ -0.71
USP4-203ENST00000415188 SMAGPQ0VAQ4 97 aa10.61□□□□□ -0.71
USP4-203ENST00000415188 FAM104AQ969W3 186 aa10.61□□□□□ -0.71
USP4-203ENST00000415188 HUWE1Q7Z6Z7 4374 aaKnown RBP10.6□□□□□ -0.71
USP4-203ENST00000415188 TRAV4A0A0B4J268 109 aa10.6□□□□□ -0.71
USP4-203ENST00000415188 IGLV1-51P01701 117 aa10.6□□□□□ -0.71
USP4-203ENST00000415188 C1QTNF4Q9BXJ3 329 aa10.6□□□□□ -0.71
USP4-203ENST00000415188 TRGV1A0A0A0MS02 117 aa10.59□□□□□ -0.71
USP4-203ENST00000415188 TMEM238C9JI98 176 aa10.59□□□□□ -0.71
USP4-203ENST00000415188 SAP30O75446 220 aa10.59□□□□□ -0.71
USP4-203ENST00000415188 DAZ2Q13117 558 aaKnown RBP10.59□□□□□ -0.71
USP4-203ENST00000415188 PGPEP1Q9NXJ5 209 aa10.59□□□□□ -0.71
USP4-203ENST00000415188 NBEAL2Q6ZNJ1 2754 aa10.59□□□□□ -0.71
USP4-203ENST00000415188 RYR3Q15413 4870 aa10.59□□□□□ -0.71
USP4-203ENST00000415188 RPL36AP83881 106 aaKnown RBP10.58□□□□□ -0.72
USP4-203ENST00000415188 RPL36ALQ969Q0 106 aaKnown RBP10.58□□□□□ -0.72
USP4-203ENST00000415188 C16orf74Q96GX8 76 aa10.58□□□□□ -0.72
USP4-203ENST00000415188 WWC2-AS2Q96NR7 200 aa10.58□□□□□ -0.72
USP4-203ENST00000415188 TENM3Q9P273 2699 aa10.58□□□□□ -0.72
USP4-203ENST00000415188 IGHV1-58A0A0C4DH39 117 aa10.57□□□□□ -0.72
USP4-203ENST00000415188 K7EQD1 137 aa10.57□□□□□ -0.72
USP4-203ENST00000415188 TIRAPP58753 221 aa10.57□□□□□ -0.72
USP4-203ENST00000415188 RNF151Q2KHN1 245 aa10.57□□□□□ -0.72
USP4-203ENST00000415188 DAZ4Q86SG3 579 aaKnown RBP10.57□□□□□ -0.72
USP4-203ENST00000415188 DAZ3Q9NR90 486 aaKnown RBP10.57□□□□□ -0.72
USP4-203ENST00000415188 IGHV3OR16-12A0A075B7B8 117 aa10.56□□□□□ -0.72
USP4-203ENST00000415188 IGHV3-30-3P0DP02 117 aa10.56□□□□□ -0.72
USP4-203ENST00000415188 INSL3P51460 131 aa10.56□□□□□ -0.72
USP4-203ENST00000415188 RPL24P83731 157 aaKnown RBP10.56□□□□□ -0.72
USP4-203ENST00000415188 VPS25Q9BRG1 176 aa10.56□□□□□ -0.72
USP4-203ENST00000415188 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.55□□□□□ -0.72
USP4-203ENST00000415188 IGLV5-45A0A087WSX0 123 aa10.55□□□□□ -0.72
USP4-203ENST00000415188 IGKV2-29A2NJV5 120 aaPredicted RBP10.55□□□□□ -0.72
USP4-203ENST00000415188 TSPAN13O95857 204 aa10.55□□□□□ -0.72
USP4-203ENST00000415188 NHLRC4P0CG21 123 aaPredicted RBP10.55□□□□□ -0.72
USP4-203ENST00000415188 Q6ZUT4 128 aa10.55□□□□□ -0.72
USP4-203ENST00000415188 C19orf73Q9NVV2 129 aa10.55□□□□□ -0.72
USP4-203ENST00000415188 CSDC2Q9Y534 153 aaKnown RBP10.55□□□□□ -0.72
USP4-203ENST00000415188 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.55□□□□□ -0.72
USP4-203ENST00000415188 A0A0B4J2C4 111 aa10.55□□□□□ -0.72
USP4-203ENST00000415188 UBE2D3P61077 147 aa10.55□□□□□ -0.72
USP4-203ENST00000415188 UBE2D2P62837 147 aa10.55□□□□□ -0.72
USP4-203ENST00000415188 FAM19A3Q7Z5A8 133 aa10.55□□□□□ -0.72
USP4-203ENST00000415188 C10orf126Q8N4M7 172 aa10.55□□□□□ -0.72
USP4-203ENST00000415188 VSIG2Q96IQ7 327 aa10.55□□□□□ -0.72
USP4-203ENST00000415188 GEMIN7Q9H840 131 aaKnown RBP10.55□□□□□ -0.72
USP4-203ENST00000415188 Q9UF83 564 aa10.55□□□□□ -0.72
USP4-203ENST00000415188 A0A0J9YXY3 114 aa10.54□□□□□ -0.72
USP4-203ENST00000415188 APOMO95445 188 aa10.54□□□□□ -0.72
USP4-203ENST00000415188 GIG44P09565 113 aaPredicted RBP10.54□□□□□ -0.72
USP4-203ENST00000415188 CFC1BP0CG36 223 aa10.54□□□□□ -0.72
USP4-203ENST00000415188 CFC1P0CG37 223 aa10.54□□□□□ -0.72
USP4-203ENST00000415188 GAGE13Q4V321 117 aa10.54□□□□□ -0.72
USP4-203ENST00000415188 DGAT2L7PQ6IED9 249 aa10.54□□□□□ -0.72
USP4-203ENST00000415188 CEMP1Q6PRD7 247 aaPredicted RBP10.54□□□□□ -0.72
USP4-203ENST00000415188 OVOL2Q9BRP0 275 aa10.54□□□□□ -0.72
USP4-203ENST00000415188 TRBV20-1A0A075B6N2 111 aa10.53□□□□□ -0.72
USP4-203ENST00000415188 IGHV3-38A0A0C4DH36 116 aa10.53□□□□□ -0.72
USP4-203ENST00000415188 TIMM17BO60830 172 aa10.53□□□□□ -0.72
USP4-203ENST00000415188 Q6ZTI0 123 aa10.53□□□□□ -0.72
USP4-203ENST00000415188 SPANXDQ9BXN6 97 aa10.53□□□□□ -0.72
USP4-203ENST00000415188 SPANXCQ9NY87 97 aa10.53□□□□□ -0.72
USP4-203ENST00000415188 PRO1854Q9UHT4 67 aa10.53□□□□□ -0.72
USP4-203ENST00000415188 H3BMG7 143 aa10.52□□□□□ -0.73
USP4-203ENST00000415188 GTSF1LQ9H1H1 148 aa10.52□□□□□ -0.73
USP4-203ENST00000415188 PRO0461Q9UI25 63 aa10.52□□□□□ -0.73
USP4-203ENST00000415188 IGHV3-64A0A075B6Q5 118 aa10.51□□□□□ -0.73
USP4-203ENST00000415188 H7C423 109 aa10.51□□□□□ -0.73
USP4-203ENST00000415188 J3QR89 54 aa10.51□□□□□ -0.73
USP4-203ENST00000415188 HERVK_113P63121 156 aa10.51□□□□□ -0.73
USP4-203ENST00000415188 ZFAND6Q6FIF0 208 aa10.51□□□□□ -0.73
USP4-203ENST00000415188 SBSPONQ8IVN8 264 aa10.51□□□□□ -0.73
USP4-203ENST00000415188 NDUFA12Q9UI09 145 aa10.51□□□□□ -0.73
USP4-203ENST00000415188 STAB2Q8WWQ8 2551 aa10.51□□□□□ -0.73
USP4-203ENST00000415188 PLAC8L1A1L4L8 177 aa10.5□□□□□ -0.73
USP4-203ENST00000415188 A4D1N5 150 aa10.5□□□□□ -0.73
USP4-203ENST00000415188 CSNK1G2-AS1Q8NCQ2 148 aa10.5□□□□□ -0.73
USP4-203ENST00000415188 RNF183Q96D59 192 aa10.5□□□□□ -0.73
USP4-203ENST00000415188 NOP10Q9NPE3 64 aaKnown RBP10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms