RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 CITED1Q99966 193 aa9.72□□□□□ -0.85
LIMS1-205ENST00000410093 NBEAL1Q6ZS30 2694 aa9.71□□□□□ -0.85
LIMS1-205ENST00000410093 TRGV2A0A075B6R0 118 aa9.71□□□□□ -0.86
LIMS1-205ENST00000410093 SRSF9Q13242 221 aaKnown RBP eCLIP9.71□□□□□ -0.86
LIMS1-205ENST00000410093 SAMD5Q5TGI4 173 aa9.71□□□□□ -0.86
LIMS1-205ENST00000410093 FAM19A3Q7Z5A8 133 aa9.71□□□□□ -0.86
LIMS1-205ENST00000410093 SLC25A29Q8N8R3 303 aa9.71□□□□□ -0.86
LIMS1-205ENST00000410093 NHP2Q9NX24 153 aaKnown RBP9.71□□□□□ -0.86
LIMS1-205ENST00000410093 A0A0J9YY99 117 aa9.7□□□□□ -0.86
LIMS1-205ENST00000410093 H3BUT2 72 aa9.7□□□□□ -0.86
LIMS1-205ENST00000410093 K7EP13 123 aa9.7□□□□□ -0.86
LIMS1-205ENST00000410093 K7EP34 96 aa9.7□□□□□ -0.86
LIMS1-205ENST00000410093 EMP1P54849 157 aa9.7□□□□□ -0.86
LIMS1-205ENST00000410093 C12orf74Q32Q52 190 aa9.7□□□□□ -0.86
LIMS1-205ENST00000410093 PHLDA1Q8WV24 401 aaPredicted RBP9.7□□□□□ -0.86
LIMS1-205ENST00000410093 OPRPNQ99935 248 aaPredicted RBP9.7□□□□□ -0.86
LIMS1-205ENST00000410093 A0A0J9YXV3 536 aa9.69□□□□□ -0.86
LIMS1-205ENST00000410093 DEFB104AQ8WTQ1 72 aa9.69□□□□□ -0.86
LIMS1-205ENST00000410093 IGHV1-58A0A0C4DH39 117 aa9.68□□□□□ -0.86
LIMS1-205ENST00000410093 TMEM238C9JI98 176 aa9.68□□□□□ -0.86
LIMS1-205ENST00000410093 LINC00612Q8N6U2 182 aa9.68□□□□□ -0.86
LIMS1-205ENST00000410093 FAM104AQ969W3 186 aa9.68□□□□□ -0.86
LIMS1-205ENST00000410093 GEMIN7Q9H840 131 aaKnown RBP9.68□□□□□ -0.86
LIMS1-205ENST00000410093 IGLV5-45A0A087WSX0 123 aa9.67□□□□□ -0.86
LIMS1-205ENST00000410093 UBE2D1P51668 147 aa9.67□□□□□ -0.86
LIMS1-205ENST00000410093 HERVK_113P63121 156 aa9.67□□□□□ -0.86
LIMS1-205ENST00000410093 RAB37Q96AX2 223 aa9.67□□□□□ -0.86
LIMS1-205ENST00000410093 WFDC10AQ9H1F0 79 aa9.67□□□□□ -0.86
LIMS1-205ENST00000410093 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.66□□□□□ -0.86
LIMS1-205ENST00000410093 TRGV4A0A0C4DH28 118 aa9.66□□□□□ -0.86
LIMS1-205ENST00000410093 GAGE12BA1L429 117 aa9.66□□□□□ -0.86
LIMS1-205ENST00000410093 IGKV2-29A2NJV5 120 aaPredicted RBP9.66□□□□□ -0.86
LIMS1-205ENST00000410093 GAGE7O76087 117 aa9.66□□□□□ -0.86
LIMS1-205ENST00000410093 GAGE12FP0CL80 117 aa9.66□□□□□ -0.86
LIMS1-205ENST00000410093 GAGE12GP0CL81 117 aa9.66□□□□□ -0.86
LIMS1-205ENST00000410093 GAGE12IP0CL82 117 aa9.66□□□□□ -0.86
LIMS1-205ENST00000410093 APOC4P55056 127 aa9.66□□□□□ -0.86
LIMS1-205ENST00000410093 SBSPONQ8IVN8 264 aa9.66□□□□□ -0.86
LIMS1-205ENST00000410093 Q9UF83 564 aa9.66□□□□□ -0.86
LIMS1-205ENST00000410093 TRRAPQ9Y4A5 3859 aa9.66□□□□□ -0.86
LIMS1-205ENST00000410093 IGHV3-38A0A0C4DH36 116 aa9.66□□□□□ -0.86
LIMS1-205ENST00000410093 WIPF1O43516 503 aa9.66□□□□□ -0.86
LIMS1-205ENST00000410093 LYRM7Q5U5X0 104 aa9.66□□□□□ -0.86
LIMS1-205ENST00000410093 TMEM101Q96IK0 257 aa9.66□□□□□ -0.86
LIMS1-205ENST00000410093 TMEM243Q9BU79 118 aa9.66□□□□□ -0.86
LIMS1-205ENST00000410093 SPCS1Q9Y6A9 102 aa9.66□□□□□ -0.86
LIMS1-205ENST00000410093 IGLL5B9A064 214 aa9.65□□□□□ -0.86
LIMS1-205ENST00000410093 UBE2L6O14933 153 aa9.65□□□□□ -0.86
LIMS1-205ENST00000410093 IGHV3-30-3P0DP02 117 aa9.65□□□□□ -0.86
LIMS1-205ENST00000410093 TSPEAR-AS2P59090 65 aa9.65□□□□□ -0.86
LIMS1-205ENST00000410093 Q6ZUT4 128 aa9.65□□□□□ -0.86
LIMS1-205ENST00000410093 WFDC9Q8NEX5 89 aa9.65□□□□□ -0.86
LIMS1-205ENST00000410093 VSIG2Q96IQ7 327 aa9.65□□□□□ -0.86
LIMS1-205ENST00000410093 LYRM9A8MSI8 78 aa9.64□□□□□ -0.87
LIMS1-205ENST00000410093 IGHV3-30P01768 117 aa9.64□□□□□ -0.87
LIMS1-205ENST00000410093 IGHV3-30-5P0DP03 117 aa9.64□□□□□ -0.87
LIMS1-205ENST00000410093 RPL24P83731 157 aaKnown RBP9.64□□□□□ -0.87
LIMS1-205ENST00000410093 MGAM2Q2M2H8 2515 aa9.63□□□□□ -0.87
LIMS1-205ENST00000410093 GAGE12JA6NER3 117 aa9.63□□□□□ -0.87
LIMS1-205ENST00000410093 TIMM17BO60830 172 aa9.63□□□□□ -0.87
LIMS1-205ENST00000410093 GAGE4Q13068 117 aa9.63□□□□□ -0.87
LIMS1-205ENST00000410093 GAGE5Q13069 117 aa9.63□□□□□ -0.87
LIMS1-205ENST00000410093 FHL2Q14192 279 aa9.63□□□□□ -0.87
LIMS1-205ENST00000410093 GAGE13Q4V321 117 aa9.63□□□□□ -0.87
LIMS1-205ENST00000410093 CEMP1Q6PRD7 247 aaPredicted RBP9.63□□□□□ -0.87
LIMS1-205ENST00000410093 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.62□□□□□ -0.87
LIMS1-205ENST00000410093 LINC00694P0DN24 101 aa9.62□□□□□ -0.87
LIMS1-205ENST00000410093 RNF183Q96D59 192 aa9.62□□□□□ -0.87
LIMS1-205ENST00000410093 CDC42SE2Q9NRR3 84 aa9.62□□□□□ -0.87
LIMS1-205ENST00000410093 ZFAND6Q6FIF0 208 aa9.61□□□□□ -0.87
LIMS1-205ENST00000410093 NTM-AS1Q6ZSK4 140 aa9.61□□□□□ -0.87
LIMS1-205ENST00000410093 A0A0J9YXY3 114 aa9.61□□□□□ -0.87
LIMS1-205ENST00000410093 K7ERJ3 54 aa9.61□□□□□ -0.87
LIMS1-205ENST00000410093 COPS9Q8WXC6 57 aa9.61□□□□□ -0.87
LIMS1-205ENST00000410093 SPANXDQ9BXN6 97 aa9.61□□□□□ -0.87
LIMS1-205ENST00000410093 SPANXCQ9NY87 97 aa9.61□□□□□ -0.87
LIMS1-205ENST00000410093 NDUFA12Q9UI09 145 aa9.6□□□□□ -0.87
LIMS1-205ENST00000410093 X6R8D5 127 aa9.6□□□□□ -0.87
LIMS1-205ENST00000410093 TRBV6-8A0A0A6YYG3 113 aa9.59□□□□□ -0.87
LIMS1-205ENST00000410093 A0A0B4J2C4 111 aa9.59□□□□□ -0.87
LIMS1-205ENST00000410093 IGLV5-39A0A0G2JS06 123 aa9.59□□□□□ -0.87
LIMS1-205ENST00000410093 F8W1H4 67 aa9.59□□□□□ -0.87
LIMS1-205ENST00000410093 NDUFA1O15239 70 aa9.59□□□□□ -0.87
LIMS1-205ENST00000410093 IFITM1P13164 125 aa9.59□□□□□ -0.87
LIMS1-205ENST00000410093 CIRBPQ14011 172 aaKnown RBP9.59□□□□□ -0.87
LIMS1-205ENST00000410093 LINC00242Q5T6M2 205 aa9.59□□□□□ -0.87
LIMS1-205ENST00000410093 K7ERU9 68 aa9.58□□□□□ -0.88
LIMS1-205ENST00000410093 MIFP14174 115 aa9.58□□□□□ -0.88
LIMS1-205ENST00000410093 C10orf126Q8N4M7 172 aa9.58□□□□□ -0.88
LIMS1-205ENST00000410093 CDKN2A-AS1Q9UH64 79 aa9.58□□□□□ -0.88
LIMS1-205ENST00000410093 PRO1854Q9UHT4 67 aa9.58□□□□□ -0.88
LIMS1-205ENST00000410093 PRO0255Q9UI72 69 aa9.58□□□□□ -0.88
LIMS1-205ENST00000410093 PKD1L1Q8TDX9 2849 aa9.57□□□□□ -0.88
LIMS1-205ENST00000410093 RNASE13Q5GAN3 156 aaKnown RBP9.57□□□□□ -0.88
LIMS1-205ENST00000410093 PPDPFQ9H3Y8 114 aa9.57□□□□□ -0.88
LIMS1-205ENST00000410093 PGPEP1Q9NXJ5 209 aa9.57□□□□□ -0.88
LIMS1-205ENST00000410093 CMYA5Q8N3K9 4069 aa9.57□□□□□ -0.88
LIMS1-205ENST00000410093 TRBV20-1A0A075B6N2 111 aa9.56□□□□□ -0.88
LIMS1-205ENST00000410093 HERV-K104P63124 156 aa9.56□□□□□ -0.88
LIMS1-205ENST00000410093 IGHV3-64A0A075B6Q5 118 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms