RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 IGHV4-61A0A0C4DH41 118 aa5.94□□□□□ -1.46
SYNE1-210ENST00000409694 DEFB4AO15263 64 aa5.94□□□□□ -1.46
SYNE1-210ENST00000409694 C11orf53Q8IXP5 236 aa5.94□□□□□ -1.46
SYNE1-210ENST00000409694 PROK2Q9HC23 129 aa5.94□□□□□ -1.46
SYNE1-210ENST00000409694 MED13LQ71F56 2210 aa5.93□□□□□ -1.46
SYNE1-210ENST00000409694 A0A096LNI7 61 aa5.93□□□□□ -1.46
SYNE1-210ENST00000409694 TRAV10A0A0B4J240 114 aa5.93□□□□□ -1.46
SYNE1-210ENST00000409694 LST1O00453 97 aa5.93□□□□□ -1.46
SYNE1-210ENST00000409694 DAZAP2Q15038 168 aaPredicted RBP5.93□□□□□ -1.46
SYNE1-210ENST00000409694 PATE2Q6UY27 113 aa5.93□□□□□ -1.46
SYNE1-210ENST00000409694 RPL28P46779 137 aaKnown RBP5.93□□□□□ -1.46
SYNE1-210ENST00000409694 ADAMTS20P59510 1910 aa5.93□□□□□ -1.46
SYNE1-210ENST00000409694 PRAC2D3DTV9 90 aa5.93□□□□□ -1.46
SYNE1-210ENST00000409694 EBI3Q14213 229 aa5.93□□□□□ -1.46
SYNE1-210ENST00000409694 Q8N976 141 aa5.93□□□□□ -1.46
SYNE1-210ENST00000409694 COL5A1P20908 1838 aaPredicted RBP5.93□□□□□ -1.46
SYNE1-210ENST00000409694 NUPR1O60356 82 aa5.93□□□□□ -1.46
SYNE1-210ENST00000409694 IGLV4-3A0A075B6K6 122 aa5.92□□□□□ -1.46
SYNE1-210ENST00000409694 U3KQK5 164 aa5.92□□□□□ -1.46
SYNE1-210ENST00000409694 SLPIP03973 132 aa5.92□□□□□ -1.46
SYNE1-210ENST00000409694 C6orf99Q4VX62 202 aa5.92□□□□□ -1.46
SYNE1-210ENST00000409694 RITA1Q96K30 269 aa5.92□□□□□ -1.46
SYNE1-210ENST00000409694 ZNF73O43830 326 aaPredicted RBP5.92□□□□□ -1.46
SYNE1-210ENST00000409694 CFAP126Q5VTH2 177 aa5.92□□□□□ -1.46
SYNE1-210ENST00000409694 DNAJC9-AS1A6NH13 148 aa5.92□□□□□ -1.46
SYNE1-210ENST00000409694 IGHV4-30-4P0DP06 118 aa5.92□□□□□ -1.46
SYNE1-210ENST00000409694 IGHV4-31P0DP07 118 aa5.92□□□□□ -1.46
SYNE1-210ENST00000409694 PLAC8L1A1L4L8 177 aa5.91□□□□□ -1.46
SYNE1-210ENST00000409694 SERTAD4-AS1Q5TG53 156 aa5.91□□□□□ -1.46
SYNE1-210ENST00000409694 IGKV2-28A0A075B6P5 120 aa5.91□□□□□ -1.46
SYNE1-210ENST00000409694 IGKV2D-28P01615 120 aa5.91□□□□□ -1.46
SYNE1-210ENST00000409694 ZNF22P17026 224 aaPredicted RBP5.91□□□□□ -1.46
SYNE1-210ENST00000409694 IGF1P05019 195 aa5.91□□□□□ -1.46
SYNE1-210ENST00000409694 F8WDY8 70 aa5.91□□□□□ -1.46
SYNE1-210ENST00000409694 IGLV9-49A0A0B4J1Y8 123 aa5.91□□□□□ -1.46
SYNE1-210ENST00000409694 HRCT1Q6UXD1 115 aa5.91□□□□□ -1.46
SYNE1-210ENST00000409694 CDKN2A-AS1Q9UH64 79 aa5.91□□□□□ -1.46
SYNE1-210ENST00000409694 LINC00694P0DN24 101 aa5.91□□□□□ -1.46
SYNE1-210ENST00000409694 TTTY13Q9BZ97 58 aa5.91□□□□□ -1.46
SYNE1-210ENST00000409694 MRPS12O15235 138 aaKnown RBP5.9□□□□□ -1.46
SYNE1-210ENST00000409694 CEMP1Q6PRD7 247 aaPredicted RBP5.9□□□□□ -1.46
SYNE1-210ENST00000409694 PLA2G2CQ5R387 149 aa5.9□□□□□ -1.47
SYNE1-210ENST00000409694 Q6ZTI0 123 aa5.9□□□□□ -1.47
SYNE1-210ENST00000409694 LIMD2Q9BT23 127 aa5.9□□□□□ -1.47
SYNE1-210ENST00000409694 PTPRBP23467 1997 aa5.89□□□□□ -1.47
SYNE1-210ENST00000409694 CXCL6P80162 114 aa5.89□□□□□ -1.47
SYNE1-210ENST00000409694 EIF4EBP1Q13541 118 aaPredicted RBP5.89□□□□□ -1.47
SYNE1-210ENST00000409694 LELP1Q5T871 98 aa5.89□□□□□ -1.47
SYNE1-210ENST00000409694 Q6ZQY7 126 aa5.89□□□□□ -1.47
SYNE1-210ENST00000409694 DCANP1Q8TF63 244 aa5.89□□□□□ -1.47
SYNE1-210ENST00000409694 RSPO1Q2MKA7 263 aaPredicted RBP5.89□□□□□ -1.47
SYNE1-210ENST00000409694 A6NDX4 124 aa5.89□□□□□ -1.47
SYNE1-210ENST00000409694 CCDC179H3BU77 68 aa5.89□□□□□ -1.47
SYNE1-210ENST00000409694 M0QY20 66 aa5.89□□□□□ -1.47
SYNE1-210ENST00000409694 P0C879 139 aa5.88□□□□□ -1.47
SYNE1-210ENST00000409694 Q8IZM0 81 aa5.88□□□□□ -1.47
SYNE1-210ENST00000409694 ZNF843Q8N446 348 aa5.88□□□□□ -1.47
SYNE1-210ENST00000409694 REG3GQ6UW15 175 aa5.88□□□□□ -1.47
SYNE1-210ENST00000409694 IGFL2Q6UWQ7 119 aa5.88□□□□□ -1.47
SYNE1-210ENST00000409694 Q6ZSR3 168 aa5.88□□□□□ -1.47
SYNE1-210ENST00000409694 C22orf34Q6ZV56 151 aa5.88□□□□□ -1.47
SYNE1-210ENST00000409694 hDV103S1A0JD37 113 aa5.88□□□□□ -1.47
SYNE1-210ENST00000409694 PIP4P1Q86T03 277 aa5.88□□□□□ -1.47
SYNE1-210ENST00000409694 UNQ9165/PRO28630Q6UXU0 137 aa5.88□□□□□ -1.47
SYNE1-210ENST00000409694 U3KQA8 63 aa5.88□□□□□ -1.47
SYNE1-210ENST00000409694 CSPG4Q6UVK1 2322 aa5.88□□□□□ -1.47
SYNE1-210ENST00000409694 ODF3BA8MYP8 253 aa5.88□□□□□ -1.47
SYNE1-210ENST00000409694 SMIM11BQ8TCY0 68 aa5.88□□□□□ -1.47
SYNE1-210ENST00000409694 TNFRSF13BO14836 293 aaPredicted RBP5.87□□□□□ -1.47
SYNE1-210ENST00000409694 LINC00526Q96FQ7 95 aa5.87□□□□□ -1.47
SYNE1-210ENST00000409694 SHISA2Q6UWI4 295 aa5.87□□□□□ -1.47
SYNE1-210ENST00000409694 XAGE1AQ9HD64 81 aa5.87□□□□□ -1.47
SYNE1-210ENST00000409694 IGLV1-47P01700 117 aa5.87□□□□□ -1.47
SYNE1-210ENST00000409694 CELA1Q9UNI1 258 aa5.87□□□□□ -1.47
SYNE1-210ENST00000409694 IGLV2-33A0A075B6J2 118 aaPredicted RBP5.87□□□□□ -1.47
SYNE1-210ENST00000409694 MRGPRG-AS1Q2M3A8 158 aa5.87□□□□□ -1.47
SYNE1-210ENST00000409694 X6R8D5 127 aa5.87□□□□□ -1.47
SYNE1-210ENST00000409694 TP53TG3Q9ULZ0 132 aa5.86□□□□□ -1.47
SYNE1-210ENST00000409694 FSTL3O95633 263 aa5.86□□□□□ -1.47
SYNE1-210ENST00000409694 K7EQG2 157 aa5.86□□□□□ -1.47
SYNE1-210ENST00000409694 DEFB114Q30KQ6 69 aa5.86□□□□□ -1.47
SYNE1-210ENST00000409694 LINC00208Q96KT6 92 aa5.86□□□□□ -1.47
SYNE1-210ENST00000409694 NUPR2A6NF83 97 aa5.86□□□□□ -1.47
SYNE1-210ENST00000409694 LOC100131303A0A0U1RQF7 123 aa5.85□□□□□ -1.47
SYNE1-210ENST00000409694 PPDPFQ9H3Y8 114 aa5.85□□□□□ -1.47
SYNE1-210ENST00000409694 H0Y9P7 68 aa5.85□□□□□ -1.47
SYNE1-210ENST00000409694 NTM-AS1Q6ZSK4 140 aa5.85□□□□□ -1.47
SYNE1-210ENST00000409694 TRBV7-7A0A0K0K1E9 115 aa5.85□□□□□ -1.47
SYNE1-210ENST00000409694 ACACBO00763 2458 aa5.85□□□□□ -1.47
SYNE1-210ENST00000409694 M0QXV9 152 aa5.85□□□□□ -1.47
SYNE1-210ENST00000409694 C1orf137Q5JT78 98 aa5.85□□□□□ -1.47
SYNE1-210ENST00000409694 Q6YL49 198 aa5.85□□□□□ -1.47
SYNE1-210ENST00000409694 Q8N814 137 aa5.85□□□□□ -1.47
SYNE1-210ENST00000409694 IGLV2-14P01704 120 aa5.85□□□□□ -1.47
SYNE1-210ENST00000409694 Q8N7P7 452 aa5.84□□□□□ -1.47
SYNE1-210ENST00000409694 IGHV6-1A0A0B4J1U7 121 aa5.84□□□□□ -1.47
SYNE1-210ENST00000409694 ZFP36P26651 326 aaKnown RBP5.84□□□□□ -1.47
SYNE1-210ENST00000409694 SPAG11AQ6PDA7 123 aa5.84□□□□□ -1.47
SYNE1-210ENST00000409694 LINC00574Q9H8X3 128 aa5.84□□□□□ -1.47
SYNE1-210ENST00000409694 SPG11Q96JI7 2443 aa5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms