RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 TCL1BO95988 128 aa9.67□□□□□ -0.86
VPS54-203ENST00000409558 TAL2Q16559 108 aa9.67□□□□□ -0.86
VPS54-203ENST00000409558 ODF3Q96PU9 254 aa9.67□□□□□ -0.86
VPS54-203ENST00000409558 IGHV3-30P01768 117 aa9.67□□□□□ -0.86
VPS54-203ENST00000409558 IGHV3-30-5P0DP03 117 aa9.67□□□□□ -0.86
VPS54-203ENST00000409558 C9JAW5 83 aa9.66□□□□□ -0.86
VPS54-203ENST00000409558 PF4P02776 101 aa9.66□□□□□ -0.86
VPS54-203ENST00000409558 GAGE6Q13070 117 aa9.66□□□□□ -0.86
VPS54-203ENST00000409558 ADAMTSL4-AS1Q5T5F5 129 aa9.66□□□□□ -0.86
VPS54-203ENST00000409558 F8P00451 2351 aa9.66□□□□□ -0.86
VPS54-203ENST00000409558 TRGV4A0A0C4DH28 118 aa9.66□□□□□ -0.86
VPS54-203ENST00000409558 EIF4EBP3O60516 100 aaPredicted RBP9.66□□□□□ -0.86
VPS54-203ENST00000409558 COX6A2Q02221 97 aa9.66□□□□□ -0.86
VPS54-203ENST00000409558 SLC25A29Q8N8R3 303 aa9.65□□□□□ -0.86
VPS54-203ENST00000409558 C11orf72Q8NBR9 251 aa9.65□□□□□ -0.86
VPS54-203ENST00000409558 PRO1854Q9UHT4 67 aa9.65□□□□□ -0.86
VPS54-203ENST00000409558 A0A0J9YXY3 114 aa9.65□□□□□ -0.86
VPS54-203ENST00000409558 MEIG1Q5JSS6 88 aa9.65□□□□□ -0.86
VPS54-203ENST00000409558 CHCHD7Q9BUK0 85 aa9.65□□□□□ -0.86
VPS54-203ENST00000409558 NFE4Q86UQ8 179 aa9.65□□□□□ -0.86
VPS54-203ENST00000409558 ERG28Q9UKR5 140 aa9.65□□□□□ -0.86
VPS54-203ENST00000409558 PDZD2O15018 2839 aa9.65□□□□□ -0.87
VPS54-203ENST00000409558 LINC00482Q8N8I6 264 aa9.65□□□□□ -0.87
VPS54-203ENST00000409558 SPANXB1Q9NS25 103 aaPredicted RBP9.65□□□□□ -0.87
VPS54-203ENST00000409558 UBE2L6O14933 153 aa9.64□□□□□ -0.87
VPS54-203ENST00000409558 LEPROTO15243 131 aa9.64□□□□□ -0.87
VPS54-203ENST00000409558 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.64□□□□□ -0.87
VPS54-203ENST00000409558 UBE2D4Q9Y2X8 147 aa9.64□□□□□ -0.87
VPS54-203ENST00000409558 TMEM262E9PQX1 116 aa9.63□□□□□ -0.87
VPS54-203ENST00000409558 RPL36AP83881 106 aaKnown RBP9.63□□□□□ -0.87
VPS54-203ENST00000409558 RPL36ALQ969Q0 106 aaKnown RBP9.63□□□□□ -0.87
VPS54-203ENST00000409558 HIVEP1P15822 2718 aa9.63□□□□□ -0.87
VPS54-203ENST00000409558 HTN3P15516 51 aa9.63□□□□□ -0.87
VPS54-203ENST00000409558 CHCHD5Q9BSY4 110 aa9.63□□□□□ -0.87
VPS54-203ENST00000409558 Q9H8V8 135 aa9.63□□□□□ -0.87
VPS54-203ENST00000409558 A0A1B0GV72 72 aa9.62□□□□□ -0.87
VPS54-203ENST00000409558 F8W1H4 67 aa9.62□□□□□ -0.87
VPS54-203ENST00000409558 TRRAPQ9Y4A5 3859 aa9.62□□□□□ -0.87
VPS54-203ENST00000409558 SPATA3Q8NHX4 192 aa9.62□□□□□ -0.87
VPS54-203ENST00000409558 AMELXQ99217 191 aa9.62□□□□□ -0.87
VPS54-203ENST00000409558 NOTCH1P46531 2555 aa9.61□□□□□ -0.87
VPS54-203ENST00000409558 TMEM238C9JI98 176 aa9.61□□□□□ -0.87
VPS54-203ENST00000409558 UBE2D1P51668 147 aa9.61□□□□□ -0.87
VPS54-203ENST00000409558 CLEC2BQ92478 149 aa9.61□□□□□ -0.87
VPS54-203ENST00000409558 J3QR89 54 aa9.61□□□□□ -0.87
VPS54-203ENST00000409558 SMCPP49901 116 aaPredicted RBP9.61□□□□□ -0.87
VPS54-203ENST00000409558 FAM104AQ969W3 186 aa9.61□□□□□ -0.87
VPS54-203ENST00000409558 MAST4O15021 2626 aa9.61□□□□□ -0.87
VPS54-203ENST00000409558 RNF152Q8N8N0 203 aa9.61□□□□□ -0.87
VPS54-203ENST00000409558 CRLF1O75462 422 aa9.6□□□□□ -0.87
VPS54-203ENST00000409558 GAGE12HA6NDE8 117 aa9.6□□□□□ -0.87
VPS54-203ENST00000409558 RPL32P62910 135 aaKnown RBP9.6□□□□□ -0.87
VPS54-203ENST00000409558 PRIMA1Q86XR5 153 aa9.6□□□□□ -0.87
VPS54-203ENST00000409558 STAB1Q9NY15 2570 aa9.59□□□□□ -0.87
VPS54-203ENST00000409558 IGHV1-58A0A0C4DH39 117 aa9.59□□□□□ -0.87
VPS54-203ENST00000409558 J3QKU1 62 aa9.59□□□□□ -0.87
VPS54-203ENST00000409558 NTM-AS1Q6ZSK4 140 aa9.59□□□□□ -0.87
VPS54-203ENST00000409558 C5orf38Q86SI9 138 aa9.59□□□□□ -0.87
VPS54-203ENST00000409558 K7EQD1 137 aa9.58□□□□□ -0.88
VPS54-203ENST00000409558 Q8N2B8 174 aa9.58□□□□□ -0.88
VPS54-203ENST00000409558 LRRC75A-AS1Q8N1F1 130 aa9.58□□□□□ -0.88
VPS54-203ENST00000409558 TMEM101Q96IK0 257 aa9.58□□□□□ -0.88
VPS54-203ENST00000409558 VSIG2Q96IQ7 327 aa9.58□□□□□ -0.88
VPS54-203ENST00000409558 INAFM1C9JVW0 142 aa9.57□□□□□ -0.88
VPS54-203ENST00000409558 PFN2P35080 140 aa9.57□□□□□ -0.88
VPS54-203ENST00000409558 PIK3CD-AS1Q5SR53 167 aa9.57□□□□□ -0.88
VPS54-203ENST00000409558 ANKRD29Q8N6D5 301 aa9.57□□□□□ -0.88
VPS54-203ENST00000409558 IGHV3-33P01772 117 aa9.57□□□□□ -0.88
VPS54-203ENST00000409558 SIGMAR1Q99720 223 aa9.57□□□□□ -0.88
VPS54-203ENST00000409558 RS1O15537 224 aa9.56□□□□□ -0.88
VPS54-203ENST00000409558 MRPS36P82909 103 aaKnown RBP9.56□□□□□ -0.88
VPS54-203ENST00000409558 PRO0461Q9UI25 63 aa9.56□□□□□ -0.88
VPS54-203ENST00000409558 RPL13AP40429 203 aaKnown RBP9.56□□□□□ -0.88
VPS54-203ENST00000409558 NSD1Q96L73 2696 aaPredicted RBP9.56□□□□□ -0.88
VPS54-203ENST00000409558 TRIAP1O43715 76 aa9.55□□□□□ -0.88
VPS54-203ENST00000409558 SLC25A20O43772 301 aa9.55□□□□□ -0.88
VPS54-203ENST00000409558 NTN5Q8WTR8 489 aaPredicted RBP9.55□□□□□ -0.88
VPS54-203ENST00000409558 LINC00242Q5T6M2 205 aa9.55□□□□□ -0.88
VPS54-203ENST00000409558 TMEM263Q8WUH6 116 aaKnown RBP9.55□□□□□ -0.88
VPS54-203ENST00000409558 SPANXA1Q9NS26 97 aa9.55□□□□□ -0.88
VPS54-203ENST00000409558 IGLV10-54A0A075B6I4 117 aa9.55□□□□□ -0.88
VPS54-203ENST00000409558 GIG44P09565 113 aaPredicted RBP9.55□□□□□ -0.88
VPS54-203ENST00000409558 FOXI1Q12951 378 aa9.55□□□□□ -0.88
VPS54-203ENST00000409558 DEFB135Q30KP9 77 aa9.55□□□□□ -0.88
VPS54-203ENST00000409558 KRTAP1-1Q07627 177 aa9.54□□□□□ -0.88
VPS54-203ENST00000409558 NBEAL1Q6ZS30 2694 aa9.54□□□□□ -0.88
VPS54-203ENST00000409558 IGLV4-60A0A075B6I1 120 aa9.53□□□□□ -0.88
VPS54-203ENST00000409558 TMEM243Q9BU79 118 aa9.53□□□□□ -0.88
VPS54-203ENST00000409558 XCL1P47992 114 aa9.53□□□□□ -0.88
VPS54-203ENST00000409558 LYRM7Q5U5X0 104 aa9.53□□□□□ -0.88
VPS54-203ENST00000409558 TEX49A0A1B0GTD5 131 aa9.53□□□□□ -0.88
VPS54-203ENST00000409558 TINCRA0A1B0GVN0 87 aa9.52□□□□□ -0.88
VPS54-203ENST00000409558 PYGO1Q9Y3Y4 419 aa9.52□□□□□ -0.89
VPS54-203ENST00000409558 C1QTNF4Q9BXJ3 329 aa9.52□□□□□ -0.89
VPS54-203ENST00000409558 LY6G6DO95868 133 aa9.52□□□□□ -0.89
VPS54-203ENST00000409558 UBE2D3P61077 147 aa9.52□□□□□ -0.89
VPS54-203ENST00000409558 UBE2D2P62837 147 aa9.52□□□□□ -0.89
VPS54-203ENST00000409558 LINC00158P58513 81 aa9.51□□□□□ -0.89
VPS54-203ENST00000409558 KRTAP10-3P60369 221 aa9.51□□□□□ -0.89
VPS54-203ENST00000409558 CIRBPQ14011 172 aaKnown RBP9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms