RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 C1orf134Q5TEV5 83 aa10.68□□□□□ -0.7
HMGA1-204ENST00000401473 C6orf223Q8N319 242 aa10.68□□□□□ -0.7
HMGA1-204ENST00000401473 HIST1H2BHQ93079 126 aa10.68□□□□□ -0.7
HMGA1-204ENST00000401473 TMEM18Q96B42 140 aa10.68□□□□□ -0.7
HMGA1-204ENST00000401473 HIST1H2BNQ99877 126 aa10.68□□□□□ -0.7
HMGA1-204ENST00000401473 HIST1H2BMQ99879 126 aa10.68□□□□□ -0.7
HMGA1-204ENST00000401473 A0A096LNJ9 63 aa10.67□□□□□ -0.7
HMGA1-204ENST00000401473 RTL8CO15255 209 aa10.67□□□□□ -0.7
HMGA1-204ENST00000401473 TIMM21Q9BVV7 248 aa10.67□□□□□ -0.7
HMGA1-204ENST00000401473 LINC00310P59036 64 aa10.66□□□□□ -0.7
HMGA1-204ENST00000401473 REG3AQ06141 175 aa10.66□□□□□ -0.7
HMGA1-204ENST00000401473 PMCHL1Q16048 86 aa10.66□□□□□ -0.7
HMGA1-204ENST00000401473 RNASE13Q5GAN3 156 aaKnown RBP10.66□□□□□ -0.7
HMGA1-204ENST00000401473 Q6ZRN7 208 aaPredicted RBP10.66□□□□□ -0.7
HMGA1-204ENST00000401473 ZNF664Q8N3J9 261 aa10.66□□□□□ -0.7
HMGA1-204ENST00000401473 OR5A1Q8NGJ0 315 aa10.66□□□□□ -0.7
HMGA1-204ENST00000401473 CYSLTR1Q9Y271 337 aa10.66□□□□□ -0.7
HMGA1-204ENST00000401473 DGAT2L7PQ6IED9 249 aa10.66□□□□□ -0.7
HMGA1-204ENST00000401473 TOMM6Q96B49 74 aa10.66□□□□□ -0.7
HMGA1-204ENST00000401473 TMEM101Q96IK0 257 aa10.66□□□□□ -0.7
HMGA1-204ENST00000401473 TRAV8-3A0A0A6YYJ7 113 aa10.65□□□□□ -0.7
HMGA1-204ENST00000401473 IGIPA6NJ69 53 aa10.65□□□□□ -0.7
HMGA1-204ENST00000401473 NUPR1O60356 82 aa10.65□□□□□ -0.7
HMGA1-204ENST00000401473 RAB5BP61020 215 aa10.65□□□□□ -0.7
HMGA1-204ENST00000401473 Q6ZUT4 128 aa10.65□□□□□ -0.7
HMGA1-204ENST00000401473 BAGE3Q86Y29 109 aa10.65□□□□□ -0.7
HMGA1-204ENST00000401473 PYGO1Q9Y3Y4 419 aa10.65□□□□□ -0.7
HMGA1-204ENST00000401473 SPANXA1Q9NS26 97 aa10.64□□□□□ -0.71
HMGA1-204ENST00000401473 IGKV3OR2-268A0A0C4DH90 116 aa10.64□□□□□ -0.71
HMGA1-204ENST00000401473 PKD1P98161 4303 aa10.63□□□□□ -0.71
HMGA1-204ENST00000401473 EPPK1P58107 5090 aaKnown RBP10.63□□□□□ -0.71
HMGA1-204ENST00000401473 SERF1AO75920 110 aa10.63□□□□□ -0.71
HMGA1-204ENST00000401473 MAPKAPK5-AS1Q8N8E1 139 aa10.63□□□□□ -0.71
HMGA1-204ENST00000401473 CHCHD1Q96BP2 118 aaKnown RBP10.63□□□□□ -0.71
HMGA1-204ENST00000401473 IGLV10-54A0A075B6I4 117 aa10.62□□□□□ -0.71
HMGA1-204ENST00000401473 IGLV4-3A0A075B6K6 122 aa10.62□□□□□ -0.71
HMGA1-204ENST00000401473 CRPP02741 224 aa10.62□□□□□ -0.71
HMGA1-204ENST00000401473 G0S2P27469 103 aa10.62□□□□□ -0.71
HMGA1-204ENST00000401473 MIAQ16674 131 aa10.62□□□□□ -0.71
HMGA1-204ENST00000401473 MRPS36P82909 103 aaKnown RBP10.61□□□□□ -0.71
HMGA1-204ENST00000401473 SMAGPQ0VAQ4 97 aa10.61□□□□□ -0.71
HMGA1-204ENST00000401473 ZC2HC1BQ5TFG8 222 aa10.61□□□□□ -0.71
HMGA1-204ENST00000401473 KRTAP26-1Q6PEX3 210 aa10.61□□□□□ -0.71
HMGA1-204ENST00000401473 FAM19A2Q8N3H0 131 aa10.61□□□□□ -0.71
HMGA1-204ENST00000401473 DNAH11Q96DT5 4516 aa10.61□□□□□ -0.71
HMGA1-204ENST00000401473 HECTD4Q9Y4D8 3996 aa10.61□□□□□ -0.71
HMGA1-204ENST00000401473 IGKV2D-24A0A075B6R9 120 aa10.61□□□□□ -0.71
HMGA1-204ENST00000401473 ERASQ7Z444 233 aa10.61□□□□□ -0.71
HMGA1-204ENST00000401473 NFE4Q86UQ8 179 aa10.61□□□□□ -0.71
HMGA1-204ENST00000401473 PKHD1P08F94 4074 aa10.6□□□□□ -0.71
HMGA1-204ENST00000401473 LINC00959A0A1B0GUT2 108 aa10.6□□□□□ -0.71
HMGA1-204ENST00000401473 C1orf196B1AJZ1 125 aa10.6□□□□□ -0.71
HMGA1-204ENST00000401473 SCGB3A1Q96QR1 104 aa10.6□□□□□ -0.71
HMGA1-204ENST00000401473 HBDP02042 147 aa10.59□□□□□ -0.71
HMGA1-204ENST00000401473 TIMM17AQ99595 171 aa10.59□□□□□ -0.71
HMGA1-204ENST00000401473 HSBP1O75506 76 aa10.59□□□□□ -0.71
HMGA1-204ENST00000401473 LINC00173Q6ZV60 143 aa10.59□□□□□ -0.71
HMGA1-204ENST00000401473 TMEM141Q96I45 108 aa10.59□□□□□ -0.71
HMGA1-204ENST00000401473 C1orf43Q9BWL3 253 aa10.59□□□□□ -0.71
HMGA1-204ENST00000401473 TRAV8-4A0A0B4J246 113 aa10.58□□□□□ -0.72
HMGA1-204ENST00000401473 TNP2Q05952 138 aa10.58□□□□□ -0.72
HMGA1-204ENST00000401473 PDZD11Q5EBL8 140 aa10.58□□□□□ -0.72
HMGA1-204ENST00000401473 AMELXQ99217 191 aa10.58□□□□□ -0.72
HMGA1-204ENST00000401473 TRAV13-1A0A0B4J241 112 aa10.57□□□□□ -0.72
HMGA1-204ENST00000401473 LINC01549A6NIU2 74 aa10.57□□□□□ -0.72
HMGA1-204ENST00000401473 VCX2Q9H322 139 aa10.57□□□□□ -0.72
HMGA1-204ENST00000401473 PRSS29PA6NIE9 313 aa10.56□□□□□ -0.72
HMGA1-204ENST00000401473 PSCAO43653 123 aa10.56□□□□□ -0.72
HMGA1-204ENST00000401473 NPSP0C0P6 89 aa10.56□□□□□ -0.72
HMGA1-204ENST00000401473 CHCHD10Q8WYQ3 142 aaPredicted RBP10.56□□□□□ -0.72
HMGA1-204ENST00000401473 TM2D2Q9BX73 214 aa10.56□□□□□ -0.72
HMGA1-204ENST00000401473 NDUFA6P56556 154 aa10.55□□□□□ -0.72
HMGA1-204ENST00000401473 TEX43Q6ZNM6 134 aa10.55□□□□□ -0.72
HMGA1-204ENST00000401473 RMI2Q96E14 147 aa10.55□□□□□ -0.72
HMGA1-204ENST00000401473 COX11Q9Y6N1 276 aa10.55□□□□□ -0.72
HMGA1-204ENST00000401473 LRCOL1A6NCL2 159 aa10.55□□□□□ -0.72
HMGA1-204ENST00000401473 CCL25O15444 150 aa10.55□□□□□ -0.72
HMGA1-204ENST00000401473 XCL1P47992 114 aa10.55□□□□□ -0.72
HMGA1-204ENST00000401473 WFDC2Q14508 124 aa10.55□□□□□ -0.72
HMGA1-204ENST00000401473 COA6Q5JTJ3 125 aaKnown RBP10.55□□□□□ -0.72
HMGA1-204ENST00000401473 LINC00336Q6ZUF6 198 aa10.55□□□□□ -0.72
HMGA1-204ENST00000401473 BAALCQ8WXS3 180 aa10.55□□□□□ -0.72
HMGA1-204ENST00000401473 IFITM10A6NMD0 228 aa10.54□□□□□ -0.72
HMGA1-204ENST00000401473 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.54□□□□□ -0.72
HMGA1-204ENST00000401473 SS18Q15532 418 aa10.54□□□□□ -0.72
HMGA1-204ENST00000401473 Q6ZN92 141 aa10.54□□□□□ -0.72
HMGA1-204ENST00000401473 GAGE12HA6NDE8 117 aa10.53□□□□□ -0.72
HMGA1-204ENST00000401473 LECT2O14960 151 aa10.53□□□□□ -0.72
HMGA1-204ENST00000401473 UBE2D1P51668 147 aa10.53□□□□□ -0.72
HMGA1-204ENST00000401473 FOXI1Q12951 378 aa10.53□□□□□ -0.72
HMGA1-204ENST00000401473 LINC00242Q5T6M2 205 aa10.53□□□□□ -0.72
HMGA1-204ENST00000401473 COX6A2Q02221 97 aa10.52□□□□□ -0.73
HMGA1-204ENST00000401473 PAPPA-AS1Q5QFB9 102 aa10.52□□□□□ -0.73
HMGA1-204ENST00000401473 CST9LQ9H4G1 147 aa10.52□□□□□ -0.73
HMGA1-204ENST00000401473 A0A087WTM6 91 aa10.51□□□□□ -0.73
HMGA1-204ENST00000401473 CD164L2Q6UWJ8 174 aa10.51□□□□□ -0.73
HMGA1-204ENST00000401473 A0A1B0GVY2 172 aa10.51□□□□□ -0.73
HMGA1-204ENST00000401473 ATP5LO75964 103 aa10.51□□□□□ -0.73
HMGA1-204ENST00000401473 FABP4P15090 132 aa10.51□□□□□ -0.73
HMGA1-204ENST00000401473 C2orf88Q9BSF0 95 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms