RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 PRO0461Q9UI25 63 aa11.86□□□□□ -0.51
PCDH1-203ENST00000394536 HERVK_113P63121 156 aa11.86□□□□□ -0.51
PCDH1-203ENST00000394536 CFAP161Q6P656 301 aa11.86□□□□□ -0.51
PCDH1-203ENST00000394536 C3orf56Q8N813 242 aa11.86□□□□□ -0.51
PCDH1-203ENST00000394536 VSIG2Q96IQ7 327 aa11.86□□□□□ -0.51
PCDH1-203ENST00000394536 A0A0B4J2C4 111 aa11.85□□□□□ -0.51
PCDH1-203ENST00000394536 C6orf226Q5I0X4 101 aa11.85□□□□□ -0.51
PCDH1-203ENST00000394536 A0A096LPF7 62 aa11.83□□□□□ -0.52
PCDH1-203ENST00000394536 J3QLI3 93 aa11.83□□□□□ -0.52
PCDH1-203ENST00000394536 MIAQ16674 131 aa11.83□□□□□ -0.52
PCDH1-203ENST00000394536 TMEM263Q8WUH6 116 aaKnown RBP11.83□□□□□ -0.52
PCDH1-203ENST00000394536 ODF3Q96PU9 254 aa11.83□□□□□ -0.52
PCDH1-203ENST00000394536 TMEM243Q9BU79 118 aa11.83□□□□□ -0.52
PCDH1-203ENST00000394536 MAP6D1Q9H9H5 199 aa11.83□□□□□ -0.52
PCDH1-203ENST00000394536 DCHS2Q6V1P9 2916 aa11.83□□□□□ -0.52
PCDH1-203ENST00000394536 NDUFA7O95182 113 aa11.83□□□□□ -0.52
PCDH1-203ENST00000394536 ADAMTSL4-AS1Q5T5F5 129 aa11.83□□□□□ -0.52
PCDH1-203ENST00000394536 C5orf38Q86SI9 138 aa11.83□□□□□ -0.52
PCDH1-203ENST00000394536 ITPR1Q14643 2758 aa11.83□□□□□ -0.52
PCDH1-203ENST00000394536 HTN3P15516 51 aa11.82□□□□□ -0.52
PCDH1-203ENST00000394536 CLPSL2Q6UWE3 100 aa11.82□□□□□ -0.52
PCDH1-203ENST00000394536 Q6ZTI0 123 aa11.82□□□□□ -0.52
PCDH1-203ENST00000394536 POM121L12Q8N7R1 296 aa11.82□□□□□ -0.52
PCDH1-203ENST00000394536 SVEP1Q4LDE5 3571 aa11.82□□□□□ -0.52
PCDH1-203ENST00000394536 NXPH4O95158 308 aa11.82□□□□□ -0.52
PCDH1-203ENST00000394536 TRAV4A0A0B4J268 109 aa11.81□□□□□ -0.52
PCDH1-203ENST00000394536 PF4P02776 101 aa11.81□□□□□ -0.52
PCDH1-203ENST00000394536 Q6ZSN1 163 aa11.81□□□□□ -0.52
PCDH1-203ENST00000394536 BAALC-AS2P0C853 105 aa11.81□□□□□ -0.52
PCDH1-203ENST00000394536 CDIP1Q9H305 208 aa11.8□□□□□ -0.52
PCDH1-203ENST00000394536 TINCRA0A1B0GVN0 87 aa11.8□□□□□ -0.52
PCDH1-203ENST00000394536 FAM19A4Q96LR4 140 aa11.8□□□□□ -0.52
PCDH1-203ENST00000394536 CCL24O00175 119 aa11.79□□□□□ -0.52
PCDH1-203ENST00000394536 PRORYQ9H606 182 aa11.79□□□□□ -0.52
PCDH1-203ENST00000394536 PIK3CD-AS1Q5SR53 167 aa11.78□□□□□ -0.52
PCDH1-203ENST00000394536 Q9HAA7 133 aa11.78□□□□□ -0.52
PCDH1-203ENST00000394536 DNAJC30Q96LL9 226 aa11.77□□□□□ -0.52
PCDH1-203ENST00000394536 UBE2D4Q9Y2X8 147 aa11.77□□□□□ -0.52
PCDH1-203ENST00000394536 RBMY1A1P0DJD3 496 aaKnown RBP11.77□□□□□ -0.53
PCDH1-203ENST00000394536 RBMY1CP0DJD4 496 aa11.77□□□□□ -0.53
PCDH1-203ENST00000394536 MRPS36P82909 103 aaKnown RBP11.77□□□□□ -0.53
PCDH1-203ENST00000394536 RBMY1FQ15415 496 aaKnown RBP11.77□□□□□ -0.53
PCDH1-203ENST00000394536 PYGO1Q9Y3Y4 419 aa11.77□□□□□ -0.53
PCDH1-203ENST00000394536 HRNRQ86YZ3 2850 aaPredicted RBP11.77□□□□□ -0.53
PCDH1-203ENST00000394536 TRBV30A0A0K0K1B3 111 aa11.77□□□□□ -0.53
PCDH1-203ENST00000394536 TMEM89A2RUT3 159 aa11.77□□□□□ -0.53
PCDH1-203ENST00000394536 FASNP49327 2511 aaKnown RBP11.76□□□□□ -0.53
PCDH1-203ENST00000394536 RBMY1BA6NDE4 496 aaKnown RBP11.76□□□□□ -0.53
PCDH1-203ENST00000394536 RBMY1EA6NEQ0 496 aaKnown RBP11.76□□□□□ -0.53
PCDH1-203ENST00000394536 RBMY1DP0C7P1 496 aaKnown RBP11.76□□□□□ -0.53
PCDH1-203ENST00000394536 DEFB114Q30KQ6 69 aa11.76□□□□□ -0.53
PCDH1-203ENST00000394536 ZNF702PQ9H963 129 aa11.76□□□□□ -0.53
PCDH1-203ENST00000394536 K7EQD1 137 aa11.76□□□□□ -0.53
PCDH1-203ENST00000394536 ZANQ9Y493 2812 aa11.76□□□□□ -0.53
PCDH1-203ENST00000394536 XCL1P47992 114 aa11.75□□□□□ -0.53
PCDH1-203ENST00000394536 CRLF1O75462 422 aa11.75□□□□□ -0.53
PCDH1-203ENST00000394536 Q6YL49 198 aa11.75□□□□□ -0.53
PCDH1-203ENST00000394536 H3BT86 120 aa11.75□□□□□ -0.53
PCDH1-203ENST00000394536 LINC00308Q8TCZ7 52 aa11.75□□□□□ -0.53
PCDH1-203ENST00000394536 MIR7-3HGQ8N6C7 128 aa11.74□□□□□ -0.53
PCDH1-203ENST00000394536 SND1-IT1Q9HBX3 110 aa11.74□□□□□ -0.53
PCDH1-203ENST00000394536 H7C423 109 aa11.74□□□□□ -0.53
PCDH1-203ENST00000394536 NDUFV3P56181 108 aaKnown RBP11.74□□□□□ -0.53
PCDH1-203ENST00000394536 TMEM86BQ8N661 226 aa11.73□□□□□ -0.53
PCDH1-203ENST00000394536 CHD6Q8TD26 2715 aa11.73□□□□□ -0.53
PCDH1-203ENST00000394536 MALP21145 153 aa11.73□□□□□ -0.53
PCDH1-203ENST00000394536 WFDC10AQ9H1F0 79 aa11.73□□□□□ -0.53
PCDH1-203ENST00000394536 COX6A2Q02221 97 aa11.72□□□□□ -0.53
PCDH1-203ENST00000394536 ESM1Q9NQ30 184 aa11.72□□□□□ -0.53
PCDH1-203ENST00000394536 SPENQ96T58 3664 aaKnown RBP11.72□□□□□ -0.53
PCDH1-203ENST00000394536 CITED2Q99967 270 aaPredicted RBP11.72□□□□□ -0.53
PCDH1-203ENST00000394536 LINC00694P0DN24 101 aa11.71□□□□□ -0.53
PCDH1-203ENST00000394536 KLK9Q2XQG4 91 aa11.71□□□□□ -0.53
PCDH1-203ENST00000394536 CHCHD7Q9BUK0 85 aa11.71□□□□□ -0.53
PCDH1-203ENST00000394536 FAM236AA0A1B0GUQ0 79 aa11.71□□□□□ -0.53
PCDH1-203ENST00000394536 FAM236BA0A1B0GV22 79 aa11.71□□□□□ -0.53
PCDH1-203ENST00000394536 IGHV4-31P0DP07 118 aa11.71□□□□□ -0.53
PCDH1-203ENST00000394536 HIST1H4AP62805 103 aaKnown RBP11.71□□□□□ -0.53
PCDH1-203ENST00000394536 DAZ2Q13117 558 aaKnown RBP11.71□□□□□ -0.53
PCDH1-203ENST00000394536 DAZ4Q86SG3 579 aaKnown RBP11.71□□□□□ -0.53
PCDH1-203ENST00000394536 DAZ3Q9NR90 486 aaKnown RBP11.71□□□□□ -0.53
PCDH1-203ENST00000394536 FLNAP21333 2647 aaKnown RBP11.71□□□□□ -0.54
PCDH1-203ENST00000394536 ATP5G1P05496 136 aa11.71□□□□□ -0.54
PCDH1-203ENST00000394536 EDA2RQ9HAV5 297 aa11.71□□□□□ -0.54
PCDH1-203ENST00000394536 DEFB113Q30KQ7 82 aa11.7□□□□□ -0.54
PCDH1-203ENST00000394536 AMELXQ99217 191 aa11.7□□□□□ -0.54
PCDH1-203ENST00000394536 SMIM20Q8N5G0 67 aa11.7□□□□□ -0.54
PCDH1-203ENST00000394536 TRAV13-2A0A0B4J235 113 aa11.7□□□□□ -0.54
PCDH1-203ENST00000394536 LOC100131303A0A0U1RQF7 123 aa11.7□□□□□ -0.54
PCDH1-203ENST00000394536 RNF152Q8N8N0 203 aa11.7□□□□□ -0.54
PCDH1-203ENST00000394536 C4orf3Q8WVX3 66 aa11.7□□□□□ -0.54
PCDH1-203ENST00000394536 KRTAP10-9P60411 292 aa11.69□□□□□ -0.54
PCDH1-203ENST00000394536 SHISA2Q6UWI4 295 aa11.69□□□□□ -0.54
PCDH1-203ENST00000394536 BRI3O95415 125 aa11.69□□□□□ -0.54
PCDH1-203ENST00000394536 FHL3Q13643 280 aa11.69□□□□□ -0.54
PCDH1-203ENST00000394536 LINC00242Q5T6M2 205 aa11.69□□□□□ -0.54
PCDH1-203ENST00000394536 IGLV10-54A0A075B6I4 117 aa11.68□□□□□ -0.54
PCDH1-203ENST00000394536 INAFM2P0DMQ5 153 aa11.68□□□□□ -0.54
PCDH1-203ENST00000394536 C9orf153Q5TBE3 101 aa11.68□□□□□ -0.54
PCDH1-203ENST00000394536 TEX15Q9BXT5 2789 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms