RNA–Protein interactions for RNA: ENST00000392456.3

CCDC50-202, Transcript of coiled-coil domain containing 50, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CCDC50, Length 2,454 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50-202ENST00000392456 DEFB1P60022 68 aa14.04□□□□□ -0.16
CCDC50-202ENST00000392456 TMEM263Q8WUH6 116 aaKnown RBP14.04□□□□□ -0.16
CCDC50-202ENST00000392456 V9GYY9 64 aa14.04□□□□□ -0.16
CCDC50-202ENST00000392456 GATA1P15976 413 aaPredicted RBP14.03□□□□□ -0.16
CCDC50-202ENST00000392456 LAGE3Q14657 143 aa14.03□□□□□ -0.16
CCDC50-202ENST00000392456 C5orf38Q86SI9 138 aa14.03□□□□□ -0.16
CCDC50-202ENST00000392456 Q8TAT8 98 aa14.03□□□□□ -0.16
CCDC50-202ENST00000392456 ATRQ13535 2644 aa14.03□□□□□ -0.16
CCDC50-202ENST00000392456 H7C423 109 aa14.03□□□□□ -0.16
CCDC50-202ENST00000392456 ERCC8Q13216 396 aa14.03□□□□□ -0.16
CCDC50-202ENST00000392456 LINC00643Q86TS7 51 aa14.03□□□□□ -0.16
CCDC50-202ENST00000392456 SOCS3O14543 225 aa14.02□□□□□ -0.16
CCDC50-202ENST00000392456 ACYP1P07311 99 aa14.02□□□□□ -0.16
CCDC50-202ENST00000392456 C16orf92Q96LL3 132 aa14.02□□□□□ -0.16
CCDC50-202ENST00000392456 TRAV13-1A0A0B4J241 112 aa14.02□□□□□ -0.17
CCDC50-202ENST00000392456 HIST1H4AP62805 103 aaKnown RBP14.02□□□□□ -0.17
CCDC50-202ENST00000392456 SMCR5Q8TEV8 140 aa14.02□□□□□ -0.17
CCDC50-202ENST00000392456 MAST4O15021 2626 aa14.01□□□□□ -0.17
CCDC50-202ENST00000392456 CXCL5P42830 114 aa14.01□□□□□ -0.17
CCDC50-202ENST00000392456 ZNF415Q09FC8 603 aa14.01□□□□□ -0.17
CCDC50-202ENST00000392456 SLC25A29Q8N8R3 303 aa14.01□□□□□ -0.17
CCDC50-202ENST00000392456 SLC50A1Q9BRV3 221 aa14.01□□□□□ -0.17
CCDC50-202ENST00000392456 SH2D1AO60880 128 aa14.01□□□□□ -0.17
CCDC50-202ENST00000392456 PFN2P35080 140 aa14.01□□□□□ -0.17
CCDC50-202ENST00000392456 J3QQQ9 107 aa14□□□□□ -0.17
CCDC50-202ENST00000392456 ATOX1O00244 68 aa14□□□□□ -0.17
CCDC50-202ENST00000392456 PROK1P58294 105 aa14□□□□□ -0.17
CCDC50-202ENST00000392456 VWFP04275 2813 aa14□□□□□ -0.17
CCDC50-202ENST00000392456 A0A0B4J2C4 111 aa14□□□□□ -0.17
CCDC50-202ENST00000392456 KRTAP10-3P60369 221 aa14□□□□□ -0.17
CCDC50-202ENST00000392456 NEXN-AS1Q8NBZ9 246 aa14□□□□□ -0.17
CCDC50-202ENST00000392456 MSRB1Q9NZV6 116 aa14□□□□□ -0.17
CCDC50-202ENST00000392456 H7C2G1 150 aa13.99□□□□□ -0.17
CCDC50-202ENST00000392456 UPK3BQ9BT76 320 aa13.99□□□□□ -0.17
CCDC50-202ENST00000392456 AGPAT4-IT1Q9H0P7 198 aa13.98□□□□□ -0.17
CCDC50-202ENST00000392456 DCANP1Q8TF63 244 aa13.98□□□□□ -0.17
CCDC50-202ENST00000392456 TRBV30A0A0K0K1B3 111 aa13.97□□□□□ -0.17
CCDC50-202ENST00000392456 F6UB75 175 aa13.97□□□□□ -0.17
CCDC50-202ENST00000392456 COX8CQ7Z4L0 72 aa13.97□□□□□ -0.17
CCDC50-202ENST00000392456 C9orf85Q96MD7 179 aa13.96□□□□□ -0.17
CCDC50-202ENST00000392456 DPH3P1Q9H4G8 78 aa13.96□□□□□ -0.17
CCDC50-202ENST00000392456 SDIM1Q6ZPB5 146 aa13.96□□□□□ -0.18
CCDC50-202ENST00000392456 ADARB2-AS1A8MUL3 147 aa13.95□□□□□ -0.18
CCDC50-202ENST00000392456 CCL24O00175 119 aa13.95□□□□□ -0.18
CCDC50-202ENST00000392456 ZNF80P51504 273 aaPredicted RBP13.95□□□□□ -0.18
CCDC50-202ENST00000392456 TRIAP1O43715 76 aa13.95□□□□□ -0.18
CCDC50-202ENST00000392456 CNFNQ9BYD5 112 aa13.95□□□□□ -0.18
CCDC50-202ENST00000392456 Q1RN00 199 aa13.94□□□□□ -0.18
CCDC50-202ENST00000392456 ZNF575Q86XF7 245 aa13.94□□□□□ -0.18
CCDC50-202ENST00000392456 TRRAPQ9Y4A5 3859 aa13.93□□□□□ -0.18
CCDC50-202ENST00000392456 NOTCH3Q9UM47 2321 aa13.93□□□□□ -0.18
CCDC50-202ENST00000392456 MRPL53Q96EL3 112 aaKnown RBP13.93□□□□□ -0.18
CCDC50-202ENST00000392456 NSUN5P1Q3KNT7 163 aa13.92□□□□□ -0.18
CCDC50-202ENST00000392456 NRACQ8N912 160 aa13.92□□□□□ -0.18
CCDC50-202ENST00000392456 SCGB3A1Q96QR1 104 aa13.92□□□□□ -0.18
CCDC50-202ENST00000392456 FAM236DA0A1B0GTK5 79 aa13.91□□□□□ -0.18
CCDC50-202ENST00000392456 FAM236CP0DP71 79 aa13.91□□□□□ -0.18
CCDC50-202ENST00000392456 C14orf178Q8N769 122 aaPredicted RBP13.91□□□□□ -0.18
CCDC50-202ENST00000392456 C9orf47Q6ZRZ4 202 aa13.9□□□□□ -0.18
CCDC50-202ENST00000392456 K7EQG2 157 aa13.89□□□□□ -0.19
CCDC50-202ENST00000392456 TMEM61Q8N0U2 210 aa13.89□□□□□ -0.19
CCDC50-202ENST00000392456 TOMM6Q96B49 74 aa13.89□□□□□ -0.19
CCDC50-202ENST00000392456 PEMTQ9UBM1 199 aa13.89□□□□□ -0.19
CCDC50-202ENST00000392456 TMEM223A0PJW6 202 aa13.89□□□□□ -0.19
CCDC50-202ENST00000392456 TSPEAR-AS2P59090 65 aa13.89□□□□□ -0.19
CCDC50-202ENST00000392456 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.89□□□□□ -0.19
CCDC50-202ENST00000392456 SERP2Q8N6R1 65 aa13.88□□□□□ -0.19
CCDC50-202ENST00000392456 AMELXQ99217 191 aa13.88□□□□□ -0.19
CCDC50-202ENST00000392456 FBN1P35555 2871 aaKnown RBP13.88□□□□□ -0.19
CCDC50-202ENST00000392456 RPL18AQ02543 176 aaKnown RBP13.88□□□□□ -0.19
CCDC50-202ENST00000392456 PRR9Q5T870 116 aa13.88□□□□□ -0.19
CCDC50-202ENST00000392456 C1orf195Q5TG92 126 aa13.88□□□□□ -0.19
CCDC50-202ENST00000392456 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.87□□□□□ -0.19
CCDC50-202ENST00000392456 SPRY2O43597 315 aa13.87□□□□□ -0.19
CCDC50-202ENST00000392456 DEFB114Q30KQ6 69 aa13.86□□□□□ -0.19
CCDC50-202ENST00000392456 EPM2AB3EWF7 344 aa13.86□□□□□ -0.19
CCDC50-202ENST00000392456 C11orf21Q9P2W6 132 aa13.85□□□□□ -0.19
CCDC50-202ENST00000392456 C11orf86A6NJI1 115 aa13.85□□□□□ -0.19
CCDC50-202ENST00000392456 PRIMA1Q86XR5 153 aa13.85□□□□□ -0.19
CCDC50-202ENST00000392456 LST1O00453 97 aa13.84□□□□□ -0.19
CCDC50-202ENST00000392456 MUSTN1Q8IVN3 82 aa13.84□□□□□ -0.19
CCDC50-202ENST00000392456 DYNLRB2Q8TF09 96 aa13.84□□□□□ -0.19
CCDC50-202ENST00000392456 ZFAND2AQ8N6M9 145 aa13.84□□□□□ -0.19
CCDC50-202ENST00000392456 ICOSQ9Y6W8 199 aa13.84□□□□□ -0.19
CCDC50-202ENST00000392456 IGKV3-20P01619 116 aa13.83□□□□□ -0.2
CCDC50-202ENST00000392456 SNRPD3P62318 126 aaKnown RBP13.83□□□□□ -0.2
CCDC50-202ENST00000392456 RHOHQ15669 191 aa13.83□□□□□ -0.2
CCDC50-202ENST00000392456 ORMDL2Q53FV1 153 aa13.83□□□□□ -0.2
CCDC50-202ENST00000392456 IGLV4-69A0A075B6H9 119 aa13.82□□□□□ -0.2
CCDC50-202ENST00000392456 SMIM2Q9BVW6 85 aa13.82□□□□□ -0.2
CCDC50-202ENST00000392456 STAB1Q9NY15 2570 aa13.82□□□□□ -0.2
CCDC50-202ENST00000392456 TRAV26-2A0A0B4J265 109 aa13.82□□□□□ -0.2
CCDC50-202ENST00000392456 SPATA3Q8NHX4 192 aa13.81□□□□□ -0.2
CCDC50-202ENST00000392456 CLEC2BQ92478 149 aa13.81□□□□□ -0.2
CCDC50-202ENST00000392456 IGKV3D-20A0A0C4DH25 116 aa13.8□□□□□ -0.2
CCDC50-202ENST00000392456 A0A0J9YX75 114 aa13.8□□□□□ -0.2
CCDC50-202ENST00000392456 NDUFC2-KCTD14E9PQ53 114 aa13.8□□□□□ -0.2
CCDC50-202ENST00000392456 PAPPA-AS1Q5QFB9 102 aa13.8□□□□□ -0.2
CCDC50-202ENST00000392456 DEFB131AP59861 70 aa13.8□□□□□ -0.2
CCDC50-202ENST00000392456 COX6CP09669 75 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 114.1 ms