RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 IGHV3-33P01772 117 aa10.64□□□□□ -0.71
TCOF1-202ENST00000377797 IGHV3-30-3P0DP02 117 aa10.64□□□□□ -0.71
TCOF1-202ENST00000377797 IGHV3-30-5P0DP03 117 aa10.64□□□□□ -0.71
TCOF1-202ENST00000377797 Q9HAA7 133 aa10.64□□□□□ -0.71
TCOF1-202ENST00000377797 RS1O15537 224 aa10.64□□□□□ -0.71
TCOF1-202ENST00000377797 C16orf95Q9H693 158 aa10.64□□□□□ -0.71
TCOF1-202ENST00000377797 IGKV2D-24A0A075B6R9 120 aa10.64□□□□□ -0.71
TCOF1-202ENST00000377797 URB1-AS1Q96HZ7 61 aa10.64□□□□□ -0.71
TCOF1-202ENST00000377797 TP73-AS1Q9UF72 201 aa10.64□□□□□ -0.71
TCOF1-202ENST00000377797 USP24Q9UPU5 2620 aa10.64□□□□□ -0.71
TCOF1-202ENST00000377797 MAP1AP78559 2803 aaPredicted RBP10.64□□□□□ -0.71
TCOF1-202ENST00000377797 TRAV26-1A0A087WT03 109 aa10.63□□□□□ -0.71
TCOF1-202ENST00000377797 POLR2KP53803 58 aaKnown RBP10.63□□□□□ -0.71
TCOF1-202ENST00000377797 LYRM9A8MSI8 78 aa10.63□□□□□ -0.71
TCOF1-202ENST00000377797 OVOL2Q9BRP0 275 aa10.63□□□□□ -0.71
TCOF1-202ENST00000377797 ITPR3Q14573 2671 aa10.63□□□□□ -0.71
TCOF1-202ENST00000377797 C9orf153Q5TBE3 101 aa10.62□□□□□ -0.71
TCOF1-202ENST00000377797 LAMTOR3Q9UHA4 124 aa10.62□□□□□ -0.71
TCOF1-202ENST00000377797 FRYLO94915 3013 aa10.62□□□□□ -0.71
TCOF1-202ENST00000377797 IGLV4-3A0A075B6K6 122 aa10.62□□□□□ -0.71
TCOF1-202ENST00000377797 HERV-K104P63124 156 aa10.62□□□□□ -0.71
TCOF1-202ENST00000377797 A4D1N5 150 aa10.62□□□□□ -0.71
TCOF1-202ENST00000377797 Q8N2B8 174 aa10.62□□□□□ -0.71
TCOF1-202ENST00000377797 C1orf43Q9BWL3 253 aa10.62□□□□□ -0.71
TCOF1-202ENST00000377797 COX7A2LO14548 114 aa10.61□□□□□ -0.71
TCOF1-202ENST00000377797 MUSTN1Q8IVN3 82 aa10.61□□□□□ -0.71
TCOF1-202ENST00000377797 KLK12Q9UKR0 248 aa10.61□□□□□ -0.71
TCOF1-202ENST00000377797 IGHV1-58A0A0C4DH39 117 aa10.61□□□□□ -0.71
TCOF1-202ENST00000377797 TRBV6-4A0A1B0GX49 114 aa10.6□□□□□ -0.71
TCOF1-202ENST00000377797 CFC1BP0CG36 223 aa10.6□□□□□ -0.71
TCOF1-202ENST00000377797 CFC1P0CG37 223 aa10.6□□□□□ -0.71
TCOF1-202ENST00000377797 RPL32P62910 135 aaKnown RBP10.6□□□□□ -0.71
TCOF1-202ENST00000377797 DAND5Q8N907 189 aa10.6□□□□□ -0.71
TCOF1-202ENST00000377797 IGKV2D-26A0A0A0MRZ7 120 aa10.59□□□□□ -0.71
TCOF1-202ENST00000377797 OXLD1Q5BKU9 147 aa10.59□□□□□ -0.71
TCOF1-202ENST00000377797 FAM110AQ9BQ89 295 aa10.59□□□□□ -0.71
TCOF1-202ENST00000377797 CCL18P55774 89 aa10.59□□□□□ -0.71
TCOF1-202ENST00000377797 COX7B2Q8TF08 81 aa10.59□□□□□ -0.71
TCOF1-202ENST00000377797 TSHBP01222 138 aa10.59□□□□□ -0.71
TCOF1-202ENST00000377797 MIFP14174 115 aa10.59□□□□□ -0.71
TCOF1-202ENST00000377797 SMIM20Q8N5G0 67 aa10.59□□□□□ -0.71
TCOF1-202ENST00000377797 B5MCH6 92 aa10.58□□□□□ -0.72
TCOF1-202ENST00000377797 IFITM1P13164 125 aa10.58□□□□□ -0.72
TCOF1-202ENST00000377797 CRYBA4P53673 196 aa10.58□□□□□ -0.72
TCOF1-202ENST00000377797 RMI2Q96E14 147 aa10.58□□□□□ -0.72
TCOF1-202ENST00000377797 INAFM2P0DMQ5 153 aa10.58□□□□□ -0.72
TCOF1-202ENST00000377797 CDKN2A-AS1Q9UH64 79 aa10.58□□□□□ -0.72
TCOF1-202ENST00000377797 TRAV13-2A0A0B4J235 113 aa10.57□□□□□ -0.72
TCOF1-202ENST00000377797 SPEGQ15772 3267 aa10.57□□□□□ -0.72
TCOF1-202ENST00000377797 SPTBN5Q9NRC6 3674 aaKnown RBP10.57□□□□□ -0.72
TCOF1-202ENST00000377797 IGLL5B9A064 214 aa10.57□□□□□ -0.72
TCOF1-202ENST00000377797 FSHBP01225 129 aa10.57□□□□□ -0.72
TCOF1-202ENST00000377797 CLUHP3Q96NS8 147 aa10.57□□□□□ -0.72
TCOF1-202ENST00000377797 C1orf158Q8N1D5 194 aa10.57□□□□□ -0.72
TCOF1-202ENST00000377797 C11orf45Q8TAV5 145 aa10.57□□□□□ -0.72
TCOF1-202ENST00000377797 ZNF22P17026 224 aaPredicted RBP10.57□□□□□ -0.72
TCOF1-202ENST00000377797 IGHV4-28A0A0C4DH34 117 aa10.56□□□□□ -0.72
TCOF1-202ENST00000377797 TINCRA0A1B0GVN0 87 aa10.56□□□□□ -0.72
TCOF1-202ENST00000377797 PIK3CD-AS1Q5SR53 167 aa10.56□□□□□ -0.72
TCOF1-202ENST00000377797 TAX1BP3O14907 124 aa10.56□□□□□ -0.72
TCOF1-202ENST00000377797 KIR2DL5BQ8NHK3 375 aa10.56□□□□□ -0.72
TCOF1-202ENST00000377797 TRBV6-8A0A0A6YYG3 113 aa10.55□□□□□ -0.72
TCOF1-202ENST00000377797 Q8N976 141 aa10.55□□□□□ -0.72
TCOF1-202ENST00000377797 LOC100131303A0A0U1RQF7 123 aa10.55□□□□□ -0.72
TCOF1-202ENST00000377797 NTN5Q8WTR8 489 aaPredicted RBP10.54□□□□□ -0.72
TCOF1-202ENST00000377797 SND1-IT1Q9HBX3 110 aa10.54□□□□□ -0.72
TCOF1-202ENST00000377797 PYGO1Q9Y3Y4 419 aa10.54□□□□□ -0.72
TCOF1-202ENST00000377797 MAPKAPK5-AS1Q8N8E1 139 aa10.54□□□□□ -0.72
TCOF1-202ENST00000377797 CARD19Q96LW7 228 aa10.54□□□□□ -0.72
TCOF1-202ENST00000377797 CAMK2N2Q96S95 79 aa10.54□□□□□ -0.72
TCOF1-202ENST00000377797 LINC00269Q8N2A0 174 aa10.53□□□□□ -0.72
TCOF1-202ENST00000377797 KLK9Q2XQG4 91 aa10.53□□□□□ -0.72
TCOF1-202ENST00000377797 IGSF10Q6WRI0 2623 aa10.53□□□□□ -0.72
TCOF1-202ENST00000377797 IGHV4-30-4P0DP06 118 aa10.53□□□□□ -0.72
TCOF1-202ENST00000377797 NKAPP1Q8N9T2 125 aa10.53□□□□□ -0.72
TCOF1-202ENST00000377797 BOD1L1Q8NFC6 3051 aa10.53□□□□□ -0.72
TCOF1-202ENST00000377797 FREM2Q5SZK8 3169 aa10.52□□□□□ -0.72
TCOF1-202ENST00000377797 SVIPQ8NHG7 77 aa10.52□□□□□ -0.73
TCOF1-202ENST00000377797 A0A096LNT2 108 aa10.52□□□□□ -0.73
TCOF1-202ENST00000377797 SPAG11BQ08648 103 aa10.51□□□□□ -0.73
TCOF1-202ENST00000377797 C15orf53Q8NAA6 179 aa10.51□□□□□ -0.73
TCOF1-202ENST00000377797 DEFB131BA0A096LNP1 70 aa10.51□□□□□ -0.73
TCOF1-202ENST00000377797 A0A0J9YXY3 114 aa10.51□□□□□ -0.73
TCOF1-202ENST00000377797 FRYQ5TBA9 3013 aa10.51□□□□□ -0.73
TCOF1-202ENST00000377797 A0A096LNJ9 63 aa10.5□□□□□ -0.73
TCOF1-202ENST00000377797 TMEM223A0PJW6 202 aa10.5□□□□□ -0.73
TCOF1-202ENST00000377797 MIR7-3HGQ8N6C7 128 aa10.5□□□□□ -0.73
TCOF1-202ENST00000377797 ATRQ13535 2644 aa10.5□□□□□ -0.73
TCOF1-202ENST00000377797 REG3AQ06141 175 aa10.5□□□□□ -0.73
TCOF1-202ENST00000377797 NFE4Q86UQ8 179 aa10.5□□□□□ -0.73
TCOF1-202ENST00000377797 H7C423 109 aa10.5□□□□□ -0.73
TCOF1-202ENST00000377797 IGIPA6NJ69 53 aa10.49□□□□□ -0.73
TCOF1-202ENST00000377797 UBE2D4Q9Y2X8 147 aa10.49□□□□□ -0.73
TCOF1-202ENST00000377797 DMXL2Q8TDJ6 3036 aa10.49□□□□□ -0.73
TCOF1-202ENST00000377797 PRB2P02812 416 aaPredicted RBP10.48□□□□□ -0.73
TCOF1-202ENST00000377797 SPATA25Q9BR10 227 aa10.48□□□□□ -0.73
TCOF1-202ENST00000377797 UBE2D3P61077 147 aa10.48□□□□□ -0.73
TCOF1-202ENST00000377797 UBE2D2P62837 147 aa10.48□□□□□ -0.73
TCOF1-202ENST00000377797 SPANXDQ9BXN6 97 aa10.48□□□□□ -0.73
TCOF1-202ENST00000377797 G3V4G9 280 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 95.2 ms