RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 TJP1Q07157 1748 aa0.17□□□□□ -2.38
VPS13A-206ENST00000376646 DOPEY2Q9Y3R5 2298 aa0.17□□□□□ -2.38
VPS13A-206ENST00000376646 LAMB1P07942 1786 aa0.17□□□□□ -2.38
VPS13A-206ENST00000376646 CUX1P39880 1505 aa0.17□□□□□ -2.38
VPS13A-206ENST00000376646 TRBV7-1A0A0A6YYK4 115 aa0.17□□□□□ -2.38
VPS13A-206ENST00000376646 UBE2G1P62253 170 aa0.17□□□□□ -2.38
VPS13A-206ENST00000376646 SMIM11BQ8TCY0 68 aa0.17□□□□□ -2.38
VPS13A-206ENST00000376646 Q96NJ1 140 aa0.17□□□□□ -2.38
VPS13A-206ENST00000376646 RPRMQ9NS64 109 aa0.17□□□□□ -2.38
VPS13A-206ENST00000376646 DCHS1Q96JQ0 3298 aa0.17□□□□□ -2.38
VPS13A-206ENST00000376646 NRKQ7Z2Y5 1582 aa0.17□□□□□ -2.38
VPS13A-206ENST00000376646 LAMC3Q9Y6N6 1575 aa0.17□□□□□ -2.38
VPS13A-206ENST00000376646 ADGRG4Q8IZF6 3080 aa0.17□□□□□ -2.38
VPS13A-206ENST00000376646 AKAP11Q9UKA4 1901 aa0.17□□□□□ -2.38
VPS13A-206ENST00000376646 BRCA2P51587 3418 aa0.17□□□□□ -2.38
VPS13A-206ENST00000376646 TMEM2Q9UHN6 1383 aa0.17□□□□□ -2.38
VPS13A-206ENST00000376646 PARP14Q460N5 1801 aa0.16□□□□□ -2.38
VPS13A-206ENST00000376646 ARFGEF1Q9Y6D6 1849 aa0.16□□□□□ -2.38
VPS13A-206ENST00000376646 MYO7AQ13402 2215 aa0.16□□□□□ -2.38
VPS13A-206ENST00000376646 DIP2AQ14689 1571 aa0.16□□□□□ -2.38
VPS13A-206ENST00000376646 THOC2Q8NI27 1593 aaKnown RBP0.16□□□□□ -2.38
VPS13A-206ENST00000376646 A6NIN4 97 aa0.16□□□□□ -2.38
VPS13A-206ENST00000376646 ACYP2P14621 99 aa0.16□□□□□ -2.38
VPS13A-206ENST00000376646 S100A7L2Q5SY68 101 aa0.16□□□□□ -2.38
VPS13A-206ENST00000376646 MAP3K4Q9Y6R4 1608 aa0.16□□□□□ -2.38
VPS13A-206ENST00000376646 WIZO95785 1651 aa0.16□□□□□ -2.38
VPS13A-206ENST00000376646 APODP05090 189 aa0.16□□□□□ -2.38
VPS13A-206ENST00000376646 SCIMPQ6UWF3 145 aa0.16□□□□□ -2.38
VPS13A-206ENST00000376646 SPTSSBQ8NFR3 76 aa0.16□□□□□ -2.38
VPS13A-206ENST00000376646 PFDN5Q99471 154 aa0.16□□□□□ -2.38
VPS13A-206ENST00000376646 VPS13CQ709C8 3753 aa0.16□□□□□ -2.38
VPS13A-206ENST00000376646 SMARCA2P51531 1590 aa0.15□□□□□ -2.38
VPS13A-206ENST00000376646 KIAA0556O60303 1618 aa0.15□□□□□ -2.38
VPS13A-206ENST00000376646 HECTD4Q9Y4D8 3996 aa0.15□□□□□ -2.38
VPS13A-206ENST00000376646 PIPP12273 146 aaPredicted RBP0.15□□□□□ -2.39
VPS13A-206ENST00000376646 UBE2D1P51668 147 aa0.15□□□□□ -2.39
VPS13A-206ENST00000376646 EDDM3BP56851 147 aa0.15□□□□□ -2.39
VPS13A-206ENST00000376646 KCNRGQ8N5I3 272 aa0.15□□□□□ -2.39
VPS13A-206ENST00000376646 SPTSSAQ969W0 71 aa0.15□□□□□ -2.39
VPS13A-206ENST00000376646 SDF2Q99470 211 aa0.15□□□□□ -2.39
VPS13A-206ENST00000376646 FRYLO94915 3013 aa0.15□□□□□ -2.39
VPS13A-206ENST00000376646 C10orf71Q711Q0 1435 aa0.15□□□□□ -2.39
VPS13A-206ENST00000376646 ADAMTS12P58397 1594 aa0.15□□□□□ -2.39
VPS13A-206ENST00000376646 CC2D2AQ9P2K1 1620 aa0.15□□□□□ -2.39
VPS13A-206ENST00000376646 MYOM1P52179 1685 aa0.15□□□□□ -2.39
VPS13A-206ENST00000376646 PTPRQQ9UMZ3 2332 aa0.15□□□□□ -2.39
VPS13A-206ENST00000376646 TRGV1A0A0A0MS02 117 aa0.15□□□□□ -2.39
VPS13A-206ENST00000376646 SNCGO76070 127 aa0.15□□□□□ -2.39
VPS13A-206ENST00000376646 NMBP08949 121 aa0.15□□□□□ -2.39
VPS13A-206ENST00000376646 GUCA1AP43080 201 aaPredicted RBP0.15□□□□□ -2.39
VPS13A-206ENST00000376646 IBTKQ9P2D0 1353 aaPredicted RBP0.15□□□□□ -2.39
VPS13A-206ENST00000376646 UNC13BO14795 1591 aa0.15□□□□□ -2.39
VPS13A-206ENST00000376646 CEP170BQ9Y4F5 1589 aaPredicted RBP0.15□□□□□ -2.39
VPS13A-206ENST00000376646 SPEF2Q9C093 1822 aa0.14□□□□□ -2.39
VPS13A-206ENST00000376646 DOCK11Q5JSL3 2073 aa0.14□□□□□ -2.39
VPS13A-206ENST00000376646 SHROOM2Q13796 1616 aa0.14□□□□□ -2.39
VPS13A-206ENST00000376646 TULP4Q9NRJ4 1543 aa0.14□□□□□ -2.39
VPS13A-206ENST00000376646 DAPK1P53355 1430 aa0.14□□□□□ -2.39
VPS13A-206ENST00000376646 MYOM3Q5VTT5 1437 aa0.14□□□□□ -2.39
VPS13A-206ENST00000376646 PPIP5K1Q6PFW1 1433 aa0.14□□□□□ -2.39
VPS13A-206ENST00000376646 LCE6AA0A183 80 aa0.14□□□□□ -2.39
VPS13A-206ENST00000376646 CLPSL1A2RUU4 121 aa0.14□□□□□ -2.39
VPS13A-206ENST00000376646 NDUFB6O95139 128 aa0.14□□□□□ -2.39
VPS13A-206ENST00000376646 IFNA17P01571 189 aa0.14□□□□□ -2.39
VPS13A-206ENST00000376646 TMEM191AQ9H0A3 160 aa0.14□□□□□ -2.39
VPS13A-206ENST00000376646 TMEM14DPA8MWL7 114 aa0.13□□□□□ -2.39
VPS13A-206ENST00000376646 CBLN1P23435 193 aa0.13□□□□□ -2.39
VPS13A-206ENST00000376646 COX6A2Q02221 97 aa0.13□□□□□ -2.39
VPS13A-206ENST00000376646 Q6ZRX8 168 aa0.13□□□□□ -2.39
VPS13A-206ENST00000376646 TCEAL4Q96EI5 215 aa0.13□□□□□ -2.39
VPS13A-206ENST00000376646 CHD9Q3L8U1 2897 aa0.13□□□□□ -2.39
VPS13A-206ENST00000376646 MGAQ8IWI9 3026 aa0.13□□□□□ -2.39
VPS13A-206ENST00000376646 ACACAQ13085 2346 aa0.13□□□□□ -2.39
VPS13A-206ENST00000376646 LAMC1P11047 1609 aa0.13□□□□□ -2.39
VPS13A-206ENST00000376646 SIPA1L3O60292 1781 aaPredicted RBP0.13□□□□□ -2.39
VPS13A-206ENST00000376646 CHD1O14646 1710 aa0.13□□□□□ -2.39
VPS13A-206ENST00000376646 DYNC2H1Q8NCM8 4307 aaKnown RBP0.13□□□□□ -2.39
VPS13A-206ENST00000376646 FAM135AQ9P2D6 1515 aa0.13□□□□□ -2.39
VPS13A-206ENST00000376646 SVEP1Q4LDE5 3571 aa0.13□□□□□ -2.39
VPS13A-206ENST00000376646 CSMD3Q7Z407 3707 aa0.12□□□□□ -2.39
VPS13A-206ENST00000376646 ABCA3Q99758 1704 aa0.12□□□□□ -2.39
VPS13A-206ENST00000376646 DNAH1Q9P2D7 4330 aa0.12□□□□□ -2.39
VPS13A-206ENST00000376646 DYNC1H1Q14204 4646 aaKnown RBP0.12□□□□□ -2.39
VPS13A-206ENST00000376646 TRAV1-2A0A0B4J238 106 aa0.12□□□□□ -2.39
VPS13A-206ENST00000376646 GCHFRP30047 84 aa0.12□□□□□ -2.39
VPS13A-206ENST00000376646 ARPC4P59998 168 aa0.12□□□□□ -2.39
VPS13A-206ENST00000376646 DPH3Q96FX2 82 aa0.12□□□□□ -2.39
VPS13A-206ENST00000376646 PDCD10Q9BUL8 212 aa0.12□□□□□ -2.39
VPS13A-206ENST00000376646 SEC11CQ9BY50 192 aa0.12□□□□□ -2.39
VPS13A-206ENST00000376646 GOLGA3Q08378 1498 aa0.12□□□□□ -2.39
VPS13A-206ENST00000376646 GRIN2AQ12879 1464 aa0.12□□□□□ -2.39
VPS13A-206ENST00000376646 PKHD1P08F94 4074 aa0.12□□□□□ -2.39
VPS13A-206ENST00000376646 FRYQ5TBA9 3013 aa0.12□□□□□ -2.39
VPS13A-206ENST00000376646 CUBNO60494 3623 aa0.12□□□□□ -2.39
VPS13A-206ENST00000376646 ZC3H13Q5T200 1668 aaKnown RBP0.12□□□□□ -2.39
VPS13A-206ENST00000376646 FREM2Q5SZK8 3169 aa0.12□□□□□ -2.39
VPS13A-206ENST00000376646 PAPPAQ13219 1627 aa0.12□□□□□ -2.39
VPS13A-206ENST00000376646 LAMA5O15230 3695 aa0.12□□□□□ -2.39
VPS13A-206ENST00000376646 APOC4-APOC2K7ER74 178 aa0.12□□□□□ -2.39
VPS13A-206ENST00000376646 HIST1H1DP16402 221 aaKnown RBP0.12□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 98 ms