RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 CHCHD10Q8WYQ3 142 aaPredicted RBP5.55□□□□□ -1.52
SYNE1-208ENST00000367256 A0A0J9YWU9 116 aa5.54□□□□□ -1.52
SYNE1-208ENST00000367256 IGLV2-8P01709 118 aa5.54□□□□□ -1.52
SYNE1-208ENST00000367256 CLUHP3Q96NS8 147 aa5.54□□□□□ -1.52
SYNE1-208ENST00000367256 Q6Q795 121 aa5.54□□□□□ -1.52
SYNE1-208ENST00000367256 IGF2RP11717 2491 aa5.54□□□□□ -1.52
SYNE1-208ENST00000367256 A0A0J9YX75 114 aa5.54□□□□□ -1.52
SYNE1-208ENST00000367256 CCDC140Q96MF4 163 aa5.54□□□□□ -1.52
SYNE1-208ENST00000367256 IBA57-AS1B1ANH7 110 aa5.54□□□□□ -1.52
SYNE1-208ENST00000367256 C3orf84H3BNL1 204 aa5.54□□□□□ -1.52
SYNE1-208ENST00000367256 IGLV1-47P01700 117 aa5.54□□□□□ -1.52
SYNE1-208ENST00000367256 DEFB1P60022 68 aa5.54□□□□□ -1.52
SYNE1-208ENST00000367256 IL17DQ8TAD2 202 aa5.54□□□□□ -1.52
SYNE1-208ENST00000367256 IGFL2Q6UWQ7 119 aa5.54□□□□□ -1.52
SYNE1-208ENST00000367256 FAM19A5Q7Z5A7 132 aaPredicted RBP5.54□□□□□ -1.52
SYNE1-208ENST00000367256 FAM19A3Q7Z5A8 133 aa5.54□□□□□ -1.52
SYNE1-208ENST00000367256 C11orf45Q8TAV5 145 aa5.54□□□□□ -1.52
SYNE1-208ENST00000367256 SNURFQ9Y675 71 aa5.54□□□□□ -1.52
SYNE1-208ENST00000367256 USP9YO00507 2555 aaPredicted RBP5.54□□□□□ -1.52
SYNE1-208ENST00000367256 LINC00467Q9BRT7 94 aa5.54□□□□□ -1.52
SYNE1-208ENST00000367256 WT1P19544 449 aaPredicted RBP5.53□□□□□ -1.52
SYNE1-208ENST00000367256 PRORYQ9H606 182 aa5.53□□□□□ -1.52
SYNE1-208ENST00000367256 PRO0255Q9UI72 69 aa5.53□□□□□ -1.52
SYNE1-208ENST00000367256 MAP6D1Q9H9H5 199 aa5.53□□□□□ -1.52
SYNE1-208ENST00000367256 FSTL3O95633 263 aa5.53□□□□□ -1.52
SYNE1-208ENST00000367256 Q8N9W7 124 aa5.53□□□□□ -1.52
SYNE1-208ENST00000367256 TRIAP1O43715 76 aa5.53□□□□□ -1.52
SYNE1-208ENST00000367256 SLPIP03973 132 aa5.53□□□□□ -1.52
SYNE1-208ENST00000367256 RPS28P62857 69 aaKnown RBP5.53□□□□□ -1.52
SYNE1-208ENST00000367256 CCKP06307 115 aa5.53□□□□□ -1.52
SYNE1-208ENST00000367256 MYCNOSP40205 109 aa5.53□□□□□ -1.52
SYNE1-208ENST00000367256 DNAJC9-AS1A6NH13 148 aa5.52□□□□□ -1.53
SYNE1-208ENST00000367256 CD164L2Q6UWJ8 174 aa5.52□□□□□ -1.53
SYNE1-208ENST00000367256 UNQ9165/PRO28630Q6UXU0 137 aa5.52□□□□□ -1.53
SYNE1-208ENST00000367256 MUC7Q8TAX7 377 aa5.52□□□□□ -1.53
SYNE1-208ENST00000367256 IGKV1D-37A0A075B6S9 117 aa5.52□□□□□ -1.53
SYNE1-208ENST00000367256 PLA2G2CQ5R387 149 aa5.52□□□□□ -1.53
SYNE1-208ENST00000367256 ZFP36P26651 326 aaKnown RBP5.52□□□□□ -1.53
SYNE1-208ENST00000367256 ODF3L1Q8IXM7 274 aa5.52□□□□□ -1.53
SYNE1-208ENST00000367256 A0A096LNI7 61 aa5.52□□□□□ -1.53
SYNE1-208ENST00000367256 INSL3P51460 131 aa5.52□□□□□ -1.53
SYNE1-208ENST00000367256 C1orf158Q8N1D5 194 aa5.52□□□□□ -1.53
SYNE1-208ENST00000367256 DCANP1Q8TF63 244 aa5.52□□□□□ -1.53
SYNE1-208ENST00000367256 ZNF706Q9Y5V0 76 aaPredicted RBP5.52□□□□□ -1.53
SYNE1-208ENST00000367256 TMEM223A0PJW6 202 aa5.51□□□□□ -1.53
SYNE1-208ENST00000367256 C9orf85Q96MD7 179 aa5.51□□□□□ -1.53
SYNE1-208ENST00000367256 NRGNQ92686 78 aa5.51□□□□□ -1.53
SYNE1-208ENST00000367256 LOXL1Q08397 574 aaPredicted RBP5.51□□□□□ -1.53
SYNE1-208ENST00000367256 GDF5OSQ5U4N7 250 aa5.51□□□□□ -1.53
SYNE1-208ENST00000367256 DHRS4-AS1Q9P1J3 65 aa5.51□□□□□ -1.53
SYNE1-208ENST00000367256 PYGO1Q9Y3Y4 419 aa5.51□□□□□ -1.53
SYNE1-208ENST00000367256 C7orf33Q8WU49 177 aa5.51□□□□□ -1.53
SYNE1-208ENST00000367256 UBE2D1P51668 147 aa5.51□□□□□ -1.53
SYNE1-208ENST00000367256 LINC00308Q8TCZ7 52 aa5.51□□□□□ -1.53
SYNE1-208ENST00000367256 COX7CP15954 63 aa5.51□□□□□ -1.53
SYNE1-208ENST00000367256 PIP4P1Q86T03 277 aa5.51□□□□□ -1.53
SYNE1-208ENST00000367256 CFAP126Q5VTH2 177 aa5.5□□□□□ -1.53
SYNE1-208ENST00000367256 Q6ZTI0 123 aa5.5□□□□□ -1.53
SYNE1-208ENST00000367256 SMIM9A6NGZ8 99 aa5.5□□□□□ -1.53
SYNE1-208ENST00000367256 TP53TG3Q9ULZ0 132 aa5.5□□□□□ -1.53
SYNE1-208ENST00000367256 FRMD6-AS1P0C7T7 363 aa5.5□□□□□ -1.53
SYNE1-208ENST00000367256 JMJD1CQ15652 2540 aa5.5□□□□□ -1.53
SYNE1-208ENST00000367256 TRBV6-5A0A0K0K1A5 114 aa5.5□□□□□ -1.53
SYNE1-208ENST00000367256 SERP1Q9Y6X1 66 aa5.5□□□□□ -1.53
SYNE1-208ENST00000367256 UBE2D4Q9Y2X8 147 aa5.5□□□□□ -1.53
SYNE1-208ENST00000367256 ANKRD11Q6UB99 2663 aaPredicted RBP5.5□□□□□ -1.53
SYNE1-208ENST00000367256 COL4A3Q01955 1670 aa5.5□□□□□ -1.53
SYNE1-208ENST00000367256 LST1O00453 97 aa5.49□□□□□ -1.53
SYNE1-208ENST00000367256 UBE2D3P61077 147 aa5.49□□□□□ -1.53
SYNE1-208ENST00000367256 NCOR2Q9Y618 2525 aa5.49□□□□□ -1.53
SYNE1-208ENST00000367256 ZNF22P17026 224 aaPredicted RBP5.49□□□□□ -1.53
SYNE1-208ENST00000367256 HRCT1Q6UXD1 115 aa5.49□□□□□ -1.53
SYNE1-208ENST00000367256 WFDC13Q8IUB5 93 aa5.49□□□□□ -1.53
SYNE1-208ENST00000367256 C2orf91Q6ZV80 131 aa5.49□□□□□ -1.53
SYNE1-208ENST00000367256 Q8N9L7 120 aa5.49□□□□□ -1.53
SYNE1-208ENST00000367256 IGKV2-28A0A075B6P5 120 aa5.49□□□□□ -1.53
SYNE1-208ENST00000367256 IGKV2D-28P01615 120 aa5.49□□□□□ -1.53
SYNE1-208ENST00000367256 CSDC2Q9Y534 153 aaKnown RBP5.49□□□□□ -1.53
SYNE1-208ENST00000367256 IGHV4-30-4P0DP06 118 aa5.49□□□□□ -1.53
SYNE1-208ENST00000367256 IGHV4-31P0DP07 118 aa5.49□□□□□ -1.53
SYNE1-208ENST00000367256 CDKN2A-AS1Q9UH64 79 aa5.49□□□□□ -1.53
SYNE1-208ENST00000367256 TRBV27A0A0K0K1C4 114 aa5.48□□□□□ -1.53
SYNE1-208ENST00000367256 EIF4EBP1Q13541 118 aaPredicted RBP5.48□□□□□ -1.53
SYNE1-208ENST00000367256 RETNQ9HD89 108 aa5.48□□□□□ -1.53
SYNE1-208ENST00000367256 HILS1P60008 231 aa5.48□□□□□ -1.53
SYNE1-208ENST00000367256 Q8N7P7 452 aa5.48□□□□□ -1.53
SYNE1-208ENST00000367256 E7EUB6 86 aa5.48□□□□□ -1.53
SYNE1-208ENST00000367256 PRR4Q16378 134 aa5.48□□□□□ -1.53
SYNE1-208ENST00000367256 Q6JHZ5 121 aa5.48□□□□□ -1.53
SYNE1-208ENST00000367256 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP5.48□□□□□ -1.53
SYNE1-208ENST00000367256 SMIM26A0A096LP01 95 aa5.48□□□□□ -1.53
SYNE1-208ENST00000367256 SPINK6Q6UWN8 80 aa5.47□□□□□ -1.53
SYNE1-208ENST00000367256 ZNF295-AS1Q8N0V1 137 aa5.47□□□□□ -1.53
SYNE1-208ENST00000367256 CNFNQ9BYD5 112 aa5.47□□□□□ -1.53
SYNE1-208ENST00000367256 IGLV4-3A0A075B6K6 122 aa5.47□□□□□ -1.53
SYNE1-208ENST00000367256 CCDC179H3BU77 68 aa5.47□□□□□ -1.53
SYNE1-208ENST00000367256 FBXL19-AS1Q494R0 122 aa5.47□□□□□ -1.53
SYNE1-208ENST00000367256 ODF3BA8MYP8 253 aa5.47□□□□□ -1.53
SYNE1-208ENST00000367256 ZNF80P51504 273 aaPredicted RBP5.47□□□□□ -1.53
SYNE1-208ENST00000367256 MRPS12O15235 138 aaKnown RBP5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms