RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 E7EQL1 145 aa9.53□□□□□ -0.88
COL6A3-203ENST00000353578 Q0VFX4 171 aa9.53□□□□□ -0.88
COL6A3-203ENST00000353578 CDIP1Q9H305 208 aa9.52□□□□□ -0.89
COL6A3-203ENST00000353578 KLK5Q9Y337 293 aaPredicted RBP9.52□□□□□ -0.89
COL6A3-203ENST00000353578 LYNX1G3V0Z9 82 aa9.52□□□□□ -0.89
COL6A3-203ENST00000353578 LYNX1P0DP58 116 aa9.52□□□□□ -0.89
COL6A3-203ENST00000353578 NTM-AS1Q6ZSK4 140 aa9.52□□□□□ -0.89
COL6A3-203ENST00000353578 FAM30AQ9NZY2 134 aa9.52□□□□□ -0.89
COL6A3-203ENST00000353578 M0QY20 66 aa9.51□□□□□ -0.89
COL6A3-203ENST00000353578 ZNF706Q9Y5V0 76 aaPredicted RBP9.51□□□□□ -0.89
COL6A3-203ENST00000353578 IGKV1D-37A0A075B6S9 117 aa9.51□□□□□ -0.89
COL6A3-203ENST00000353578 MUC6Q6W4X9 2439 aa9.5□□□□□ -0.89
COL6A3-203ENST00000353578 CD164Q04900 197 aa9.5□□□□□ -0.89
COL6A3-203ENST00000353578 FRMD6-AS1P0C7T7 363 aa9.5□□□□□ -0.89
COL6A3-203ENST00000353578 CLPSL2Q6UWE3 100 aa9.5□□□□□ -0.89
COL6A3-203ENST00000353578 CDKN2A-AS1Q9UH64 79 aa9.5□□□□□ -0.89
COL6A3-203ENST00000353578 PRSS33Q8NF86 280 aa9.5□□□□□ -0.89
COL6A3-203ENST00000353578 BRD3OSQ6XYD6 125 aa9.5□□□□□ -0.89
COL6A3-203ENST00000353578 ACANP16112 2415 aa9.5□□□□□ -0.89
COL6A3-203ENST00000353578 THSD7BQ9C0I4 1608 aa9.5□□□□□ -0.89
COL6A3-203ENST00000353578 HIGD2AQ9BW72 106 aa9.49□□□□□ -0.89
COL6A3-203ENST00000353578 POLQO75417 2590 aa9.49□□□□□ -0.89
COL6A3-203ENST00000353578 VWCEQ96DN2 955 aa9.49□□□□□ -0.89
COL6A3-203ENST00000353578 BPESC1Q9GZL8 116 aa9.49□□□□□ -0.89
COL6A3-203ENST00000353578 A8MZ25 164 aa9.49□□□□□ -0.89
COL6A3-203ENST00000353578 NAV2Q8IVL1 2488 aa9.48□□□□□ -0.89
COL6A3-203ENST00000353578 Q8N6K4 173 aa9.48□□□□□ -0.89
COL6A3-203ENST00000353578 WFDC10BQ8IUB3 73 aa9.48□□□□□ -0.89
COL6A3-203ENST00000353578 H3BPC8 53 aa9.47□□□□□ -0.89
COL6A3-203ENST00000353578 Q6ZQT7 251 aa9.47□□□□□ -0.89
COL6A3-203ENST00000353578 COL4A5P29400 1685 aa9.47□□□□□ -0.89
COL6A3-203ENST00000353578 ERC2-IT1O76042 136 aa9.47□□□□□ -0.89
COL6A3-203ENST00000353578 IGLV2-11P01706 119 aa9.47□□□□□ -0.89
COL6A3-203ENST00000353578 PRO0255Q9UI72 69 aa9.47□□□□□ -0.89
COL6A3-203ENST00000353578 ZNF295-AS1Q8N0V1 137 aa9.47□□□□□ -0.89
COL6A3-203ENST00000353578 Q8N3U1 123 aa9.47□□□□□ -0.89
COL6A3-203ENST00000353578 Q8N814 137 aa9.46□□□□□ -0.89
COL6A3-203ENST00000353578 ZNRD1Q9P1U0 126 aa9.46□□□□□ -0.89
COL6A3-203ENST00000353578 CGB3P0DN86 165 aa9.46□□□□□ -0.9
COL6A3-203ENST00000353578 C5orf56Q8N8D9 126 aa9.46□□□□□ -0.9
COL6A3-203ENST00000353578 LINC00322Q6ZN03 302 aaPredicted RBP9.46□□□□□ -0.9
COL6A3-203ENST00000353578 M0R378 163 aa9.45□□□□□ -0.9
COL6A3-203ENST00000353578 CCL18P55774 89 aa9.45□□□□□ -0.9
COL6A3-203ENST00000353578 A0A087WZ39 114 aa9.45□□□□□ -0.9
COL6A3-203ENST00000353578 LINC00310P59036 64 aa9.45□□□□□ -0.9
COL6A3-203ENST00000353578 SIRPDQ9H106 197 aa9.45□□□□□ -0.9
COL6A3-203ENST00000353578 LINC00467Q9BRT7 94 aa9.45□□□□□ -0.9
COL6A3-203ENST00000353578 CGB7P0DN87 165 aa9.45□□□□□ -0.9
COL6A3-203ENST00000353578 Q8IZM0 81 aa9.45□□□□□ -0.9
COL6A3-203ENST00000353578 ODF3L1Q8IXM7 274 aa9.45□□□□□ -0.9
COL6A3-203ENST00000353578 ZNF73O43830 326 aaPredicted RBP9.44□□□□□ -0.9
COL6A3-203ENST00000353578 ABCA12Q86UK0 2595 aa9.44□□□□□ -0.9
COL6A3-203ENST00000353578 LINC01546A6NGU7 62 aa9.44□□□□□ -0.9
COL6A3-203ENST00000353578 IGLV1-47P01700 117 aa9.44□□□□□ -0.9
COL6A3-203ENST00000353578 COX8CQ7Z4L0 72 aa9.44□□□□□ -0.9
COL6A3-203ENST00000353578 C4orf3Q8WVX3 66 aa9.44□□□□□ -0.9
COL6A3-203ENST00000353578 PROK2Q9HC23 129 aa9.44□□□□□ -0.9
COL6A3-203ENST00000353578 TRBV6-4A0A1B0GX49 114 aa9.44□□□□□ -0.9
COL6A3-203ENST00000353578 LINC00208Q96KT6 92 aa9.44□□□□□ -0.9
COL6A3-203ENST00000353578 C8orf87E5RJ46 101 aa9.44□□□□□ -0.9
COL6A3-203ENST00000353578 C6orf99Q4VX62 202 aa9.43□□□□□ -0.9
COL6A3-203ENST00000353578 CD164L2Q6UWJ8 174 aa9.43□□□□□ -0.9
COL6A3-203ENST00000353578 SMIM11BQ8TCY0 68 aa9.43□□□□□ -0.9
COL6A3-203ENST00000353578 AJUBAQ96IF1 538 aa9.43□□□□□ -0.9
COL6A3-203ENST00000353578 USP9XQ93008 2570 aaPredicted RBP9.43□□□□□ -0.9
COL6A3-203ENST00000353578 LTBP2Q14767 1821 aa9.43□□□□□ -0.9
COL6A3-203ENST00000353578 PIEZO2Q9H5I5 2752 aa9.43□□□□□ -0.9
COL6A3-203ENST00000353578 CYP4F30PQ9H0H9 118 aa9.43□□□□□ -0.9
COL6A3-203ENST00000353578 PSPHP1O15172 72 aa9.42□□□□□ -0.9
COL6A3-203ENST00000353578 POLR2KP53803 58 aaKnown RBP9.42□□□□□ -0.9
COL6A3-203ENST00000353578 REG3AQ06141 175 aa9.42□□□□□ -0.9
COL6A3-203ENST00000353578 IGLV10-54A0A075B6I4 117 aa9.42□□□□□ -0.9
COL6A3-203ENST00000353578 WIPF1O43516 503 aa9.42□□□□□ -0.9
COL6A3-203ENST00000353578 PRAC2D3DTV9 90 aa9.42□□□□□ -0.9
COL6A3-203ENST00000353578 Q6ZQY7 126 aa9.42□□□□□ -0.9
COL6A3-203ENST00000353578 C9orf66Q5T8R8 295 aa9.41□□□□□ -0.9
COL6A3-203ENST00000353578 ARTNQ5T4W7 220 aa9.41□□□□□ -0.9
COL6A3-203ENST00000353578 TSHBP01222 138 aa9.41□□□□□ -0.9
COL6A3-203ENST00000353578 C1orf158Q8N1D5 194 aa9.41□□□□□ -0.9
COL6A3-203ENST00000353578 SOSTDC1Q6X4U4 206 aa9.4□□□□□ -0.9
COL6A3-203ENST00000353578 TP53AIP1Q9HCN2 124 aa9.4□□□□□ -0.9
COL6A3-203ENST00000353578 ZFAND3Q9H8U3 227 aa9.4□□□□□ -0.9
COL6A3-203ENST00000353578 DIAPH2-AS1Q14236 149 aa9.4□□□□□ -0.9
COL6A3-203ENST00000353578 IGIPA6NJ69 53 aa9.4□□□□□ -0.9
COL6A3-203ENST00000353578 NANOS2P60321 138 aaKnown RBP9.4□□□□□ -0.9
COL6A3-203ENST00000353578 NCOR2Q9Y618 2525 aa9.4□□□□□ -0.9
COL6A3-203ENST00000353578 HCG22E2RYF7 251 aa9.4□□□□□ -0.91
COL6A3-203ENST00000353578 EPOPA6NHQ4 379 aa9.39□□□□□ -0.91
COL6A3-203ENST00000353578 C3orf84H3BNL1 204 aa9.39□□□□□ -0.91
COL6A3-203ENST00000353578 PRM2P04554 102 aa9.39□□□□□ -0.91
COL6A3-203ENST00000353578 CHCHD10Q8WYQ3 142 aaPredicted RBP9.39□□□□□ -0.91
COL6A3-203ENST00000353578 ZNF503-AS2A6NEH8 195 aa9.39□□□□□ -0.91
COL6A3-203ENST00000353578 SPRY2O43597 315 aa9.38□□□□□ -0.91
COL6A3-203ENST00000353578 LINC01561Q8N1V8 128 aa9.38□□□□□ -0.91
COL6A3-203ENST00000353578 HILS1P60008 231 aa9.38□□□□□ -0.91
COL6A3-203ENST00000353578 BEAN1Q3B7T3 259 aa9.38□□□□□ -0.91
COL6A3-203ENST00000353578 Q8N9W7 124 aa9.38□□□□□ -0.91
COL6A3-203ENST00000353578 TRBV6-8A0A0A6YYG3 113 aa9.37□□□□□ -0.91
COL6A3-203ENST00000353578 PCSK5Q92824 1860 aa9.37□□□□□ -0.91
COL6A3-203ENST00000353578 RUSC1-AS1Q66K80 236 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms