RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 EIF4EBP3O60516 100 aaPredicted RBP13.14□□□□□ -0.31
SHKBP1-201ENST00000291842 IGHV1-58A0A0C4DH39 117 aa13.14□□□□□ -0.31
SHKBP1-201ENST00000291842 GEMIN7Q9H840 131 aaKnown RBP13.14□□□□□ -0.31
SHKBP1-201ENST00000291842 H7C2G1 150 aa13.13□□□□□ -0.31
SHKBP1-201ENST00000291842 NDUFA7O95182 113 aa13.13□□□□□ -0.31
SHKBP1-201ENST00000291842 IGLV1-51P01701 117 aa13.13□□□□□ -0.31
SHKBP1-201ENST00000291842 ZNF418Q8TF45 676 aaPredicted RBP13.13□□□□□ -0.31
SHKBP1-201ENST00000291842 PRO1854Q9UHT4 67 aa13.13□□□□□ -0.31
SHKBP1-201ENST00000291842 GAGE12JA6NER3 117 aa13.13□□□□□ -0.31
SHKBP1-201ENST00000291842 K7EQD1 137 aa13.13□□□□□ -0.31
SHKBP1-201ENST00000291842 GAGE4Q13068 117 aa13.13□□□□□ -0.31
SHKBP1-201ENST00000291842 GAGE5Q13069 117 aa13.13□□□□□ -0.31
SHKBP1-201ENST00000291842 C19orf73Q9NVV2 129 aa13.13□□□□□ -0.31
SHKBP1-201ENST00000291842 CDKN2A-AS1Q9UH64 79 aa13.13□□□□□ -0.31
SHKBP1-201ENST00000291842 HIVEP2P31629 2446 aa13.13□□□□□ -0.31
SHKBP1-201ENST00000291842 UBE2D3P61077 147 aa13.12□□□□□ -0.31
SHKBP1-201ENST00000291842 UBE2D2P62837 147 aa13.12□□□□□ -0.31
SHKBP1-201ENST00000291842 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.12□□□□□ -0.31
SHKBP1-201ENST00000291842 VSIG2Q96IQ7 327 aa13.12□□□□□ -0.31
SHKBP1-201ENST00000291842 NDUFA12Q9UI09 145 aa13.12□□□□□ -0.31
SHKBP1-201ENST00000291842 TMEM238C9JI98 176 aa13.12□□□□□ -0.31
SHKBP1-201ENST00000291842 GAGE7O76087 117 aa13.12□□□□□ -0.31
SHKBP1-201ENST00000291842 GAGE12FP0CL80 117 aa13.12□□□□□ -0.31
SHKBP1-201ENST00000291842 GAGE12GP0CL81 117 aa13.12□□□□□ -0.31
SHKBP1-201ENST00000291842 GAGE12IP0CL82 117 aa13.12□□□□□ -0.31
SHKBP1-201ENST00000291842 HILS1P60008 231 aa13.12□□□□□ -0.31
SHKBP1-201ENST00000291842 RPL36AP83881 106 aaKnown RBP13.12□□□□□ -0.31
SHKBP1-201ENST00000291842 NTM-AS1Q6ZSK4 140 aa13.12□□□□□ -0.31
SHKBP1-201ENST00000291842 RPL36ALQ969Q0 106 aaKnown RBP13.12□□□□□ -0.31
SHKBP1-201ENST00000291842 KMT2BQ9UMN6 2715 aaPredicted RBP13.11□□□□□ -0.31
SHKBP1-201ENST00000291842 PRSS2P07478 247 aa13.11□□□□□ -0.31
SHKBP1-201ENST00000291842 COX6A2Q02221 97 aa13.11□□□□□ -0.31
SHKBP1-201ENST00000291842 ADAMTSL4-AS1Q5T5F5 129 aa13.11□□□□□ -0.31
SHKBP1-201ENST00000291842 HECTD1Q9ULT8 2610 aa13.11□□□□□ -0.31
SHKBP1-201ENST00000291842 NPC2P61916 151 aa13.1□□□□□ -0.31
SHKBP1-201ENST00000291842 TRAV4A0A0B4J268 109 aa13.1□□□□□ -0.31
SHKBP1-201ENST00000291842 PLAC8L1A1L4L8 177 aa13.1□□□□□ -0.31
SHKBP1-201ENST00000291842 LITAFQ99732 161 aa13.1□□□□□ -0.31
SHKBP1-201ENST00000291842 TRGV2A0A075B6R0 118 aa13.09□□□□□ -0.31
SHKBP1-201ENST00000291842 TCL1BO95988 128 aa13.09□□□□□ -0.31
SHKBP1-201ENST00000291842 NOTCH2Q04721 2471 aa13.09□□□□□ -0.31
SHKBP1-201ENST00000291842 SCGB1C2P0DMR2 95 aa13.09□□□□□ -0.31
SHKBP1-201ENST00000291842 INSL3P51460 131 aa13.09□□□□□ -0.31
SHKBP1-201ENST00000291842 GCN1Q92616 2671 aaKnown RBP13.08□□□□□ -0.32
SHKBP1-201ENST00000291842 LOC100131303A0A0U1RQF7 123 aa13.08□□□□□ -0.32
SHKBP1-201ENST00000291842 SMCPP49901 116 aaPredicted RBP13.08□□□□□ -0.32
SHKBP1-201ENST00000291842 KRTAP10-3P60369 221 aa13.08□□□□□ -0.32
SHKBP1-201ENST00000291842 TRAV13-1A0A0B4J241 112 aa13.07□□□□□ -0.32
SHKBP1-201ENST00000291842 CMC4P56277 68 aaPredicted RBP13.07□□□□□ -0.32
SHKBP1-201ENST00000291842 DAZ2Q13117 558 aaKnown RBP13.07□□□□□ -0.32
SHKBP1-201ENST00000291842 C16orf74Q96GX8 76 aa13.07□□□□□ -0.32
SHKBP1-201ENST00000291842 TRBV10-1A0A0K0K1A3 114 aa13.06□□□□□ -0.32
SHKBP1-201ENST00000291842 IGHV3-33P01772 117 aa13.06□□□□□ -0.32
SHKBP1-201ENST00000291842 CSNK1G2-AS1Q8NCQ2 148 aa13.06□□□□□ -0.32
SHKBP1-201ENST00000291842 TMEM101Q96IK0 257 aa13.06□□□□□ -0.32
SHKBP1-201ENST00000291842 LINC00242Q5T6M2 205 aa13.06□□□□□ -0.32
SHKBP1-201ENST00000291842 DAZ4Q86SG3 579 aaKnown RBP13.06□□□□□ -0.32
SHKBP1-201ENST00000291842 DAZ3Q9NR90 486 aaKnown RBP13.06□□□□□ -0.32
SHKBP1-201ENST00000291842 FN1P02751 2386 aaKnown RBP13.05□□□□□ -0.32
SHKBP1-201ENST00000291842 DAND5Q8N907 189 aa13.05□□□□□ -0.32
SHKBP1-201ENST00000291842 ERG28Q9UKR5 140 aa13.05□□□□□ -0.32
SHKBP1-201ENST00000291842 Q1RN00 199 aa13.04□□□□□ -0.32
SHKBP1-201ENST00000291842 ZFAND6Q6FIF0 208 aa13.04□□□□□ -0.32
SHKBP1-201ENST00000291842 TIRAPP58753 221 aa13.03□□□□□ -0.32
SHKBP1-201ENST00000291842 LYRM7Q5U5X0 104 aa13.03□□□□□ -0.32
SHKBP1-201ENST00000291842 VWFP04275 2813 aa13.03□□□□□ -0.32
SHKBP1-201ENST00000291842 A0A0B4J2C4 111 aa13.03□□□□□ -0.32
SHKBP1-201ENST00000291842 ZNF625Q96I27 306 aaPredicted RBP13.02□□□□□ -0.32
SHKBP1-201ENST00000291842 C1QTNF4Q9BXJ3 329 aa13.02□□□□□ -0.32
SHKBP1-201ENST00000291842 NBEAL2Q6ZNJ1 2754 aa13.02□□□□□ -0.33
SHKBP1-201ENST00000291842 IGLV5-45A0A087WSX0 123 aa13.02□□□□□ -0.33
SHKBP1-201ENST00000291842 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.02□□□□□ -0.33
SHKBP1-201ENST00000291842 TRGV4A0A0C4DH28 118 aa13.02□□□□□ -0.33
SHKBP1-201ENST00000291842 PF4P02776 101 aa13.02□□□□□ -0.33
SHKBP1-201ENST00000291842 SBSPONQ8IVN8 264 aa13.02□□□□□ -0.33
SHKBP1-201ENST00000291842 FAM110AQ9BQ89 295 aa13.02□□□□□ -0.33
SHKBP1-201ENST00000291842 A0A0U1RRA0 63 aa13.01□□□□□ -0.33
SHKBP1-201ENST00000291842 MIAQ16674 131 aa13.01□□□□□ -0.33
SHKBP1-201ENST00000291842 LY6G6DO95868 133 aa13□□□□□ -0.33
SHKBP1-201ENST00000291842 HERVK_113P63121 156 aa13□□□□□ -0.33
SHKBP1-201ENST00000291842 SPANXDQ9BXN6 97 aa13□□□□□ -0.33
SHKBP1-201ENST00000291842 CDC42SE2Q9NRR3 84 aa13□□□□□ -0.33
SHKBP1-201ENST00000291842 SPANXCQ9NY87 97 aa13□□□□□ -0.33
SHKBP1-201ENST00000291842 TRBV20-1A0A075B6N2 111 aa13□□□□□ -0.33
SHKBP1-201ENST00000291842 UBE2L6O14933 153 aa13□□□□□ -0.33
SHKBP1-201ENST00000291842 J3QR89 54 aa12.99□□□□□ -0.33
SHKBP1-201ENST00000291842 SPATA3Q8NHX4 192 aa12.99□□□□□ -0.33
SHKBP1-201ENST00000291842 OVOL2Q9BRP0 275 aa12.99□□□□□ -0.33
SHKBP1-201ENST00000291842 TMEM243Q9BU79 118 aa12.99□□□□□ -0.33
SHKBP1-201ENST00000291842 Q9H8V8 135 aa12.99□□□□□ -0.33
SHKBP1-201ENST00000291842 CSDC2Q9Y534 153 aaKnown RBP12.99□□□□□ -0.33
SHKBP1-201ENST00000291842 OTOGQ6ZRI0 2925 aa12.99□□□□□ -0.33
SHKBP1-201ENST00000291842 NDUFA1O15239 70 aa12.98□□□□□ -0.33
SHKBP1-201ENST00000291842 DEFB130BP0DP73 79 aa12.98□□□□□ -0.33
SHKBP1-201ENST00000291842 DEFB130AP0DP74 79 aa12.98□□□□□ -0.33
SHKBP1-201ENST00000291842 IGKV3OR2-268A0A0C4DH90 116 aa12.97□□□□□ -0.33
SHKBP1-201ENST00000291842 TRBV6-4A0A1B0GX49 114 aa12.97□□□□□ -0.33
SHKBP1-201ENST00000291842 SMIM1B2RUZ4 78 aa12.97□□□□□ -0.33
SHKBP1-201ENST00000291842 FOXI1Q12951 378 aa12.97□□□□□ -0.33
SHKBP1-201ENST00000291842 GTSF1LQ9H1H1 148 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms