RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 A8MTW9 85 aa9.85□□□□□ -0.83
LDLR-201ENST00000252444 FHL2Q14192 279 aa9.85□□□□□ -0.83
LDLR-201ENST00000252444 ZFAND6Q6FIF0 208 aa9.85□□□□□ -0.83
LDLR-201ENST00000252444 TRBV30A0A0K0K1B3 111 aa9.85□□□□□ -0.83
LDLR-201ENST00000252444 PCP2Q8IVA1 136 aa9.85□□□□□ -0.83
LDLR-201ENST00000252444 UBL5Q9BZL1 73 aa9.85□□□□□ -0.83
LDLR-201ENST00000252444 NAV2Q8IVL1 2488 aa9.84□□□□□ -0.83
LDLR-201ENST00000252444 UBE2D1P51668 147 aa9.84□□□□□ -0.83
LDLR-201ENST00000252444 SYCNQ0VAF6 134 aa9.84□□□□□ -0.83
LDLR-201ENST00000252444 LINC00173Q6ZV60 143 aa9.84□□□□□ -0.83
LDLR-201ENST00000252444 LOC107984640A0A0U1RRK4 108 aa9.84□□□□□ -0.83
LDLR-201ENST00000252444 CREBBPQ92793 2442 aa9.83□□□□□ -0.84
LDLR-201ENST00000252444 LINC00959A0A1B0GUT2 108 aa9.83□□□□□ -0.84
LDLR-201ENST00000252444 CDC42SE2Q9NRR3 84 aa9.83□□□□□ -0.84
LDLR-201ENST00000252444 H3BT86 120 aa9.83□□□□□ -0.84
LDLR-201ENST00000252444 WFDC10AQ9H1F0 79 aa9.82□□□□□ -0.84
LDLR-201ENST00000252444 KRTAP24-1Q3LI83 254 aa9.82□□□□□ -0.84
LDLR-201ENST00000252444 GAGE2EQ4V326 116 aa9.82□□□□□ -0.84
LDLR-201ENST00000252444 GAGE2DQ9UEU5 116 aa9.82□□□□□ -0.84
LDLR-201ENST00000252444 MIR7-3HGQ8N6C7 128 aa9.81□□□□□ -0.84
LDLR-201ENST00000252444 TET2Q6N021 2002 aaPredicted RBP9.81□□□□□ -0.84
LDLR-201ENST00000252444 FUSP35637 526 aaKnown RBP eCLIP9.81□□□□□ -0.84
LDLR-201ENST00000252444 ZNF706Q9Y5V0 76 aaPredicted RBP9.81□□□□□ -0.84
LDLR-201ENST00000252444 A0A1B0GX51 115 aa9.81□□□□□ -0.84
LDLR-201ENST00000252444 UBE2AP49459 152 aa9.81□□□□□ -0.84
LDLR-201ENST00000252444 RBMY1FQ15415 496 aaKnown RBP9.81□□□□□ -0.84
LDLR-201ENST00000252444 TLN1Q9Y490 2541 aaKnown RBP9.81□□□□□ -0.84
LDLR-201ENST00000252444 COX7BP24311 80 aa9.8□□□□□ -0.84
LDLR-201ENST00000252444 LURAP1LQ8IV03 231 aa9.8□□□□□ -0.84
LDLR-201ENST00000252444 IGIPA6NJ69 53 aa9.8□□□□□ -0.84
LDLR-201ENST00000252444 GAGE2BQ13066 116 aa9.8□□□□□ -0.84
LDLR-201ENST00000252444 SIGMAR1Q99720 223 aa9.8□□□□□ -0.84
LDLR-201ENST00000252444 C11orf72Q8NBR9 251 aa9.8□□□□□ -0.84
LDLR-201ENST00000252444 C2orf48Q96LS8 159 aa9.8□□□□□ -0.84
LDLR-201ENST00000252444 A8MZ25 164 aa9.8□□□□□ -0.84
LDLR-201ENST00000252444 ABCA1O95477 2261 aa9.79□□□□□ -0.84
LDLR-201ENST00000252444 TMEM256-PLSCR3K7ERE1 68 aa9.79□□□□□ -0.84
LDLR-201ENST00000252444 KRTAP1-3Q8IUG1 177 aa9.79□□□□□ -0.84
LDLR-201ENST00000252444 CDKN2A-AS1Q9UH64 79 aa9.79□□□□□ -0.84
LDLR-201ENST00000252444 HIST2H2BDQ6DRA6 164 aa9.79□□□□□ -0.84
LDLR-201ENST00000252444 C7orf33Q8WU49 177 aa9.79□□□□□ -0.84
LDLR-201ENST00000252444 CACNA1AO00555 2505 aa9.78□□□□□ -0.84
LDLR-201ENST00000252444 SPATA3Q8NHX4 192 aa9.78□□□□□ -0.84
LDLR-201ENST00000252444 EGFEM1PQ0D2K5 195 aa9.78□□□□□ -0.84
LDLR-201ENST00000252444 AMELXQ99217 191 aa9.78□□□□□ -0.84
LDLR-201ENST00000252444 TNCP24821 2201 aa9.77□□□□□ -0.84
LDLR-201ENST00000252444 NANOS2P60321 138 aaKnown RBP9.77□□□□□ -0.84
LDLR-201ENST00000252444 A0A1B0GV72 72 aa9.77□□□□□ -0.85
LDLR-201ENST00000252444 EDN2P20800 178 aa9.77□□□□□ -0.85
LDLR-201ENST00000252444 M0R378 163 aa9.76□□□□□ -0.85
LDLR-201ENST00000252444 GAGE2AQ6NT46 116 aa9.76□□□□□ -0.85
LDLR-201ENST00000252444 BAALC-AS2P0C853 105 aa9.76□□□□□ -0.85
LDLR-201ENST00000252444 A0A087WZ39 114 aa9.75□□□□□ -0.85
LDLR-201ENST00000252444 KIF25-AS1Q9Y6Z4 181 aa9.75□□□□□ -0.85
LDLR-201ENST00000252444 PRRC2AP48634 2157 aaKnown RBP9.75□□□□□ -0.85
LDLR-201ENST00000252444 DHRS4-AS1Q9P1J3 65 aa9.75□□□□□ -0.85
LDLR-201ENST00000252444 MAJINQ3KP22 176 aa9.74□□□□□ -0.85
LDLR-201ENST00000252444 CEMP1Q6PRD7 247 aaPredicted RBP9.74□□□□□ -0.85
LDLR-201ENST00000252444 TRBV10-2A0A0K0K1G8 114 aa9.73□□□□□ -0.85
LDLR-201ENST00000252444 LINC00308Q8TCZ7 52 aa9.73□□□□□ -0.85
LDLR-201ENST00000252444 H3BMG7 143 aa9.73□□□□□ -0.85
LDLR-201ENST00000252444 TRACP01848 142 aa9.73□□□□□ -0.85
LDLR-201ENST00000252444 ATRXP46100 2492 aa9.73□□□□□ -0.85
LDLR-201ENST00000252444 ANKRD29Q8N6D5 301 aa9.73□□□□□ -0.85
LDLR-201ENST00000252444 HIVEP3Q5T1R4 2406 aa9.72□□□□□ -0.85
LDLR-201ENST00000252444 LINC01620Q4KN68 170 aa9.72□□□□□ -0.85
LDLR-201ENST00000252444 IGLV2-18A0A075B6J9 118 aa9.72□□□□□ -0.85
LDLR-201ENST00000252444 NCR3O14931 201 aa9.71□□□□□ -0.86
LDLR-201ENST00000252444 LINC01556Q5JQF7 62 aa9.71□□□□□ -0.86
LDLR-201ENST00000252444 LYPD5Q6UWN5 251 aa9.7□□□□□ -0.86
LDLR-201ENST00000252444 HIGD2BQ4VC39 106 aa9.7□□□□□ -0.86
LDLR-201ENST00000252444 Q6ZTC4 211 aa9.7□□□□□ -0.86
LDLR-201ENST00000252444 DOPEY1Q5JWR5 2465 aa9.69□□□□□ -0.86
LDLR-201ENST00000252444 C4orf48Q5BLP8 95 aa9.69□□□□□ -0.86
LDLR-201ENST00000252444 IGKV2D-26A0A0A0MRZ7 120 aa9.69□□□□□ -0.86
LDLR-201ENST00000252444 LOC100131303A0A0U1RQF7 123 aa9.69□□□□□ -0.86
LDLR-201ENST00000252444 FXYD2P54710 66 aa9.69□□□□□ -0.86
LDLR-201ENST00000252444 hADV29S1A0JD25 119 aa9.69□□□□□ -0.86
LDLR-201ENST00000252444 MED13LQ71F56 2210 aa9.68□□□□□ -0.86
LDLR-201ENST00000252444 KRTAP1-1Q07627 177 aa9.68□□□□□ -0.86
LDLR-201ENST00000252444 LINC00242Q5T6M2 205 aa9.68□□□□□ -0.86
LDLR-201ENST00000252444 K7ERJ3 54 aa9.68□□□□□ -0.86
LDLR-201ENST00000252444 NDUFB1O75438 58 aa9.68□□□□□ -0.86
LDLR-201ENST00000252444 NDUFC2O95298 119 aa9.68□□□□□ -0.86
LDLR-201ENST00000252444 X6R8D5 127 aa9.68□□□□□ -0.86
LDLR-201ENST00000252444 G3V4G9 280 aa9.67□□□□□ -0.86
LDLR-201ENST00000252444 NAA38Q9BRA0 125 aaKnown RBP9.67□□□□□ -0.86
LDLR-201ENST00000252444 TEN1Q86WV5 123 aa9.66□□□□□ -0.86
LDLR-201ENST00000252444 C19orf73Q9NVV2 129 aa9.65□□□□□ -0.86
LDLR-201ENST00000252444 ARHGAP32A7KAX9 2087 aa9.65□□□□□ -0.86
LDLR-201ENST00000252444 NOTCH3Q9UM47 2321 aa9.65□□□□□ -0.86
LDLR-201ENST00000252444 TRAV23DV6A0A075B6W5 121 aa9.65□□□□□ -0.87
LDLR-201ENST00000252444 ANKRD11Q6UB99 2663 aaPredicted RBP9.65□□□□□ -0.87
LDLR-201ENST00000252444 RETNQ9HD89 108 aa9.64□□□□□ -0.87
LDLR-201ENST00000252444 DSCAML1Q8TD84 2053 aa9.64□□□□□ -0.87
LDLR-201ENST00000252444 RBM3P98179 157 aaKnown RBP9.64□□□□□ -0.87
LDLR-201ENST00000252444 SMIM20Q8N5G0 67 aa9.64□□□□□ -0.87
LDLR-201ENST00000252444 SMIM1B2RUZ4 78 aa9.64□□□□□ -0.87
LDLR-201ENST00000252444 SPG11Q96JI7 2443 aa9.63□□□□□ -0.87
LDLR-201ENST00000252444 LY6G6CO95867 125 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 90.2 ms