RNA–Protein interactions for RNA: ENST00000243082.4

HOXC11-201, Transcript of homeobox C11, humanhuman

TSL 3 BASIC

Gene HOXC11, Length 2,039 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-201ENST00000243082 UBE2V1Q13404 147 aa13.06□□□□□ -0.32
HOXC11-201ENST00000243082 VAMP3Q15836 100 aa13.06□□□□□ -0.32
HOXC11-201ENST00000243082 SCGB1D4Q6XE38 83 aa13.06□□□□□ -0.32
HOXC11-201ENST00000243082 GTSF1LQ9H1H1 148 aa13.06□□□□□ -0.32
HOXC11-201ENST00000243082 NBEAL2Q6ZNJ1 2754 aa13.06□□□□□ -0.32
HOXC11-201ENST00000243082 TINCRA0A1B0GVN0 87 aa13.06□□□□□ -0.32
HOXC11-201ENST00000243082 PTTG1IPP53801 180 aa13.06□□□□□ -0.32
HOXC11-201ENST00000243082 C9orf118A6NHY6 69 aa13.05□□□□□ -0.32
HOXC11-201ENST00000243082 CCL25O15444 150 aa13.05□□□□□ -0.32
HOXC11-201ENST00000243082 DGAT2L7PQ6IED9 249 aa13.05□□□□□ -0.32
HOXC11-201ENST00000243082 SMIM13P0DJ93 91 aa13.05□□□□□ -0.32
HOXC11-201ENST00000243082 UBE2D1P51668 147 aa13.05□□□□□ -0.32
HOXC11-201ENST00000243082 KRTAP24-1Q3LI83 254 aa13.05□□□□□ -0.32
HOXC11-201ENST00000243082 RAB37Q96AX2 223 aa13.05□□□□□ -0.32
HOXC11-201ENST00000243082 CSDC2Q9Y534 153 aaKnown RBP13.05□□□□□ -0.32
HOXC11-201ENST00000243082 IGHV3-64A0A075B6Q5 118 aa13.04□□□□□ -0.32
HOXC11-201ENST00000243082 A0A0J9YY99 117 aa13.04□□□□□ -0.32
HOXC11-201ENST00000243082 LGALS3P17931 250 aaKnown RBP13.04□□□□□ -0.32
HOXC11-201ENST00000243082 APOC4P55056 127 aa13.04□□□□□ -0.32
HOXC11-201ENST00000243082 DEFB135Q30KP9 77 aa13.04□□□□□ -0.32
HOXC11-201ENST00000243082 AMMECR1LQ6DCA0 310 aa13.04□□□□□ -0.32
HOXC11-201ENST00000243082 K7ERJ3 54 aa13.03□□□□□ -0.32
HOXC11-201ENST00000243082 NHP2Q9NX24 153 aaKnown RBP13.03□□□□□ -0.32
HOXC11-201ENST00000243082 H3BUT2 72 aa13.01□□□□□ -0.33
HOXC11-201ENST00000243082 NAA38Q9BRA0 125 aaKnown RBP13.01□□□□□ -0.33
HOXC11-201ENST00000243082 IGHV3-30-3P0DP02 117 aa13.01□□□□□ -0.33
HOXC11-201ENST00000243082 OR5A1Q8NGJ0 315 aa13.01□□□□□ -0.33
HOXC11-201ENST00000243082 TMEM243Q9BU79 118 aa13.01□□□□□ -0.33
HOXC11-201ENST00000243082 TRAV8-3A0A0A6YYJ7 113 aa13□□□□□ -0.33
HOXC11-201ENST00000243082 TIRAPP58753 221 aa13□□□□□ -0.33
HOXC11-201ENST00000243082 FAM222AQ5U5X8 452 aa13□□□□□ -0.33
HOXC11-201ENST00000243082 CDC42SE2Q9NRR3 84 aa13□□□□□ -0.33
HOXC11-201ENST00000243082 FBN1P35555 2871 aaKnown RBP12.99□□□□□ -0.33
HOXC11-201ENST00000243082 IGHV1-58A0A0C4DH39 117 aa12.99□□□□□ -0.33
HOXC11-201ENST00000243082 LYRM9A8MSI8 78 aa12.99□□□□□ -0.33
HOXC11-201ENST00000243082 IGHV4-30-4P0DP06 118 aa12.99□□□□□ -0.33
HOXC11-201ENST00000243082 SRSF9Q13242 221 aaKnown RBP eCLIP12.99□□□□□ -0.33
HOXC11-201ENST00000243082 C12orf74Q32Q52 190 aa12.99□□□□□ -0.33
HOXC11-201ENST00000243082 GEMIN7Q9H840 131 aaKnown RBP12.99□□□□□ -0.33
HOXC11-201ENST00000243082 SPANXB1Q9NS25 103 aaPredicted RBP12.99□□□□□ -0.33
HOXC11-201ENST00000243082 IGLV5-45A0A087WSX0 123 aa12.98□□□□□ -0.33
HOXC11-201ENST00000243082 FAM19A3Q7Z5A8 133 aa12.98□□□□□ -0.33
HOXC11-201ENST00000243082 IGHV4-28A0A0C4DH34 117 aa12.98□□□□□ -0.33
HOXC11-201ENST00000243082 DEFB4AO15263 64 aa12.98□□□□□ -0.33
HOXC11-201ENST00000243082 COX6A2Q02221 97 aa12.98□□□□□ -0.33
HOXC11-201ENST00000243082 SMAGPQ0VAQ4 97 aa12.98□□□□□ -0.33
HOXC11-201ENST00000243082 CDKN2A-AS1Q9UH64 79 aa12.98□□□□□ -0.33
HOXC11-201ENST00000243082 A0A1B0GWB2 263 aa12.97□□□□□ -0.33
HOXC11-201ENST00000243082 H7C423 109 aa12.97□□□□□ -0.33
HOXC11-201ENST00000243082 UBE2L6O14933 153 aa12.97□□□□□ -0.33
HOXC11-201ENST00000243082 SPINK8P0C7L1 97 aa12.97□□□□□ -0.33
HOXC11-201ENST00000243082 LINC00242Q5T6M2 205 aa12.97□□□□□ -0.33
HOXC11-201ENST00000243082 VSIG2Q96IQ7 327 aa12.97□□□□□ -0.33
HOXC11-201ENST00000243082 TRBV6-8A0A0A6YYG3 113 aa12.96□□□□□ -0.33
HOXC11-201ENST00000243082 C10orf126Q8N4M7 172 aa12.96□□□□□ -0.33
HOXC11-201ENST00000243082 OXLD1Q5BKU9 147 aa12.96□□□□□ -0.34
HOXC11-201ENST00000243082 A0A1W2PPM0 123 aa12.95□□□□□ -0.34
HOXC11-201ENST00000243082 IGHV3-30P01768 117 aa12.95□□□□□ -0.34
HOXC11-201ENST00000243082 IGHV3-30-5P0DP03 117 aa12.95□□□□□ -0.34
HOXC11-201ENST00000243082 Q8NAQ8 132 aa12.95□□□□□ -0.34
HOXC11-201ENST00000243082 CYSRT1A8MQ03 144 aa12.95□□□□□ -0.34
HOXC11-201ENST00000243082 A8MZ25 164 aa12.95□□□□□ -0.34
HOXC11-201ENST00000243082 GYPEP15421 78 aa12.95□□□□□ -0.34
HOXC11-201ENST00000243082 SAMD5Q5TGI4 173 aa12.95□□□□□ -0.34
HOXC11-201ENST00000243082 RNF183Q96D59 192 aa12.95□□□□□ -0.34
HOXC11-201ENST00000243082 TMEM101Q96IK0 257 aa12.95□□□□□ -0.34
HOXC11-201ENST00000243082 PRO0255Q9UI72 69 aa12.95□□□□□ -0.34
HOXC11-201ENST00000243082 TRAV13-1A0A0B4J241 112 aa12.94□□□□□ -0.34
HOXC11-201ENST00000243082 MIFP14174 115 aa12.94□□□□□ -0.34
HOXC11-201ENST00000243082 HERVK_113P63121 156 aa12.94□□□□□ -0.34
HOXC11-201ENST00000243082 KRTAP10-11P60412 298 aa12.93□□□□□ -0.34
HOXC11-201ENST00000243082 GAGE6Q13070 117 aa12.93□□□□□ -0.34
HOXC11-201ENST00000243082 A0A0J9YXY3 114 aa12.93□□□□□ -0.34
HOXC11-201ENST00000243082 GAGE10A6NGK3 116 aa12.93□□□□□ -0.34
HOXC11-201ENST00000243082 IGLL5B9A064 214 aa12.93□□□□□ -0.34
HOXC11-201ENST00000243082 C3orf56Q8N813 242 aa12.92□□□□□ -0.34
HOXC11-201ENST00000243082 ATP6V0E2Q8NHE4 81 aa12.92□□□□□ -0.34
HOXC11-201ENST00000243082 TMEM238LA0A1B0GVL6 79 aa12.91□□□□□ -0.34
HOXC11-201ENST00000243082 A6NJY4 79 aa12.91□□□□□ -0.34
HOXC11-201ENST00000243082 NDUFA12Q9UI09 145 aa12.91□□□□□ -0.34
HOXC11-201ENST00000243082 CELA1Q9UNI1 258 aa12.91□□□□□ -0.34
HOXC11-201ENST00000243082 CMYA5Q8N3K9 4069 aa12.91□□□□□ -0.34
HOXC11-201ENST00000243082 K7EP34 96 aa12.9□□□□□ -0.34
HOXC11-201ENST00000243082 ZFAND6Q6FIF0 208 aa12.9□□□□□ -0.34
HOXC11-201ENST00000243082 PRIMA1Q86XR5 153 aa12.9□□□□□ -0.34
HOXC11-201ENST00000243082 CHCHD5Q9BSY4 110 aa12.9□□□□□ -0.34
HOXC11-201ENST00000243082 IGLV4-60A0A075B6I1 120 aa12.89□□□□□ -0.35
HOXC11-201ENST00000243082 IGLV5-39A0A0G2JS06 123 aa12.89□□□□□ -0.35
HOXC11-201ENST00000243082 FABP2P12104 132 aa12.89□□□□□ -0.35
HOXC11-201ENST00000243082 DAD1P61803 113 aa12.89□□□□□ -0.35
HOXC11-201ENST00000243082 SHISA2Q6UWI4 295 aa12.89□□□□□ -0.35
HOXC11-201ENST00000243082 PAX4O43316 350 aa12.89□□□□□ -0.35
HOXC11-201ENST00000243082 GTF2H5Q6ZYL4 71 aa12.89□□□□□ -0.35
HOXC11-201ENST00000243082 LITAFQ99732 161 aa12.89□□□□□ -0.35
HOXC11-201ENST00000243082 EGFEM1PQ0D2K5 195 aa12.88□□□□□ -0.35
HOXC11-201ENST00000243082 SPCS1Q9Y6A9 102 aa12.88□□□□□ -0.35
HOXC11-201ENST00000243082 STAB1Q9NY15 2570 aa12.88□□□□□ -0.35
HOXC11-201ENST00000243082 TMEM238C9JI98 176 aa12.88□□□□□ -0.35
HOXC11-201ENST00000243082 SMIM1B2RUZ4 78 aa12.87□□□□□ -0.35
HOXC11-201ENST00000243082 F5H768 121 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms