RNA–Protein interactions for RNA: ENST00000233468.4

SF3B6-201, Transcript of splicing factor 3b subunit 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B6, Length 770 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B6-201ENST00000233468 Q8N976 141 aa7.55□□□□□ -1.2
SF3B6-201ENST00000233468 PRELID3AQ96N28 172 aa7.55□□□□□ -1.2
SF3B6-201ENST00000233468 TRAV8-4A0A0B4J246 113 aa7.54□□□□□ -1.2
SF3B6-201ENST00000233468 TSHBP01222 138 aa7.54□□□□□ -1.2
SF3B6-201ENST00000233468 HLA-DQA1P01909 254 aa7.54□□□□□ -1.2
SF3B6-201ENST00000233468 RAB5AP20339 215 aa7.54□□□□□ -1.2
SF3B6-201ENST00000233468 LINC00269Q8N2A0 174 aa7.54□□□□□ -1.2
SF3B6-201ENST00000233468 DEFB104AQ8WTQ1 72 aa7.54□□□□□ -1.2
SF3B6-201ENST00000233468 A0A087WTM6 91 aa7.53□□□□□ -1.2
SF3B6-201ENST00000233468 MT-ND6P03923 174 aa7.53□□□□□ -1.2
SF3B6-201ENST00000233468 FGF6P10767 208 aa7.53□□□□□ -1.2
SF3B6-201ENST00000233468 ESDP10768 282 aa7.53□□□□□ -1.2
SF3B6-201ENST00000233468 REG3AQ06141 175 aa7.53□□□□□ -1.2
SF3B6-201ENST00000233468 DGAT2L7PQ6IED9 249 aa7.53□□□□□ -1.2
SF3B6-201ENST00000233468 SMIM2Q9BVW6 85 aa7.53□□□□□ -1.2
SF3B6-201ENST00000233468 GNB1LQ9BYB4 327 aa7.53□□□□□ -1.2
SF3B6-201ENST00000233468 MAP1LC3AQ9H492 121 aa7.53□□□□□ -1.2
SF3B6-201ENST00000233468 PRR34Q9NV39 138 aa7.53□□□□□ -1.2
SF3B6-201ENST00000233468 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.52□□□□□ -1.21
SF3B6-201ENST00000233468 IGKV2-29A2NJV5 120 aaPredicted RBP7.52□□□□□ -1.21
SF3B6-201ENST00000233468 NPYP01303 97 aa7.52□□□□□ -1.21
SF3B6-201ENST00000233468 ENHOQ6UWT2 76 aa7.52□□□□□ -1.21
SF3B6-201ENST00000233468 SPATA12Q7Z6I5 190 aa7.52□□□□□ -1.21
SF3B6-201ENST00000233468 OR5A1Q8NGJ0 315 aa7.52□□□□□ -1.21
SF3B6-201ENST00000233468 LRP1BQ9NZR2 4599 aa7.51□□□□□ -1.21
SF3B6-201ENST00000233468 PRSS47A8MTI9 375 aa7.51□□□□□ -1.21
SF3B6-201ENST00000233468 C16orf90A8MZG2 172 aa7.51□□□□□ -1.21
SF3B6-201ENST00000233468 K7EMI3 77 aa7.51□□□□□ -1.21
SF3B6-201ENST00000233468 C14orf177Q52M58 125 aa7.51□□□□□ -1.21
SF3B6-201ENST00000233468 MRPL52Q86TS9 123 aaKnown RBP7.51□□□□□ -1.21
SF3B6-201ENST00000233468 C20orf203Q8NBC4 194 aa7.51□□□□□ -1.21
SF3B6-201ENST00000233468 NTN5Q8WTR8 489 aaPredicted RBP7.51□□□□□ -1.21
SF3B6-201ENST00000233468 IGLV4-60A0A075B6I1 120 aa7.5□□□□□ -1.21
SF3B6-201ENST00000233468 G0S2P27469 103 aa7.5□□□□□ -1.21
SF3B6-201ENST00000233468 MAPKAPK5-AS1Q8N8E1 139 aa7.5□□□□□ -1.21
SF3B6-201ENST00000233468 CSDC2Q9Y534 153 aaKnown RBP7.5□□□□□ -1.21
SF3B6-201ENST00000233468 LRCOL1A6NCL2 159 aa7.49□□□□□ -1.21
SF3B6-201ENST00000233468 CLPSL2Q6UWE3 100 aa7.49□□□□□ -1.21
SF3B6-201ENST00000233468 Q8N8P6 123 aa7.49□□□□□ -1.21
SF3B6-201ENST00000233468 NXT2Q9NPJ8 142 aaKnown RBP7.49□□□□□ -1.21
SF3B6-201ENST00000233468 LOC389332A0A1B0GUA5 103 aa7.48□□□□□ -1.21
SF3B6-201ENST00000233468 CCL25O15444 150 aa7.48□□□□□ -1.21
SF3B6-201ENST00000233468 CDK2AP2O75956 126 aa7.48□□□□□ -1.21
SF3B6-201ENST00000233468 FABP9Q0Z7S8 132 aa7.48□□□□□ -1.21
SF3B6-201ENST00000233468 ORMDL2Q53FV1 153 aa7.48□□□□□ -1.21
SF3B6-201ENST00000233468 SLC7A5P1Q8MH63 180 aa7.48□□□□□ -1.21
SF3B6-201ENST00000233468 ZNF664Q8N3J9 261 aa7.48□□□□□ -1.21
SF3B6-201ENST00000233468 Q8N814 137 aa7.48□□□□□ -1.21
SF3B6-201ENST00000233468 TIMM21Q9BVV7 248 aa7.48□□□□□ -1.21
SF3B6-201ENST00000233468 APOBP04114 4563 aaKnown RBP7.48□□□□□ -1.21
SF3B6-201ENST00000233468 SS18Q15532 418 aa7.47□□□□□ -1.21
SF3B6-201ENST00000233468 BAALCQ8WXS3 180 aa7.47□□□□□ -1.21
SF3B6-201ENST00000233468 SMCO4Q9NRQ5 59 aa7.47□□□□□ -1.21
SF3B6-201ENST00000233468 CDC42SE2Q9NRR3 84 aa7.47□□□□□ -1.21
SF3B6-201ENST00000233468 SPANXA1Q9NS26 97 aa7.47□□□□□ -1.21
SF3B6-201ENST00000233468 UBE2D4Q9Y2X8 147 aa7.47□□□□□ -1.21
SF3B6-201ENST00000233468 IGLV10-54A0A075B6I4 117 aa7.46□□□□□ -1.22
SF3B6-201ENST00000233468 IGLV5-52A0A0A0MRZ9 124 aa7.46□□□□□ -1.22
SF3B6-201ENST00000233468 TGIF2-C20orf24A0A0A6YYL0 155 aa7.46□□□□□ -1.22
SF3B6-201ENST00000233468 IGKV3OR2-268A0A0C4DH90 116 aa7.46□□□□□ -1.22
SF3B6-201ENST00000233468 IFI27P40305 119 aaPredicted RBP7.46□□□□□ -1.22
SF3B6-201ENST00000233468 KIAA1644Q3SXP7 199 aa7.46□□□□□ -1.22
SF3B6-201ENST00000233468 CFAP161Q6P656 301 aa7.46□□□□□ -1.22
SF3B6-201ENST00000233468 PRSS3P2Q8NHM4 247 aa7.46□□□□□ -1.22
SF3B6-201ENST00000233468 TRAPPC1Q9Y5R8 145 aa7.46□□□□□ -1.22
SF3B6-201ENST00000233468 LINC01549A6NIU2 74 aa7.45□□□□□ -1.22
SF3B6-201ENST00000233468 KRTAP10-2P60368 255 aa7.45□□□□□ -1.22
SF3B6-201ENST00000233468 C1orf196B1AJZ1 125 aa7.44□□□□□ -1.22
SF3B6-201ENST00000233468 LECT2O14960 151 aa7.44□□□□□ -1.22
SF3B6-201ENST00000233468 MRPS36P82909 103 aaKnown RBP7.44□□□□□ -1.22
SF3B6-201ENST00000233468 Q8N1X5 172 aa7.44□□□□□ -1.22
SF3B6-201ENST00000233468 CHCHD10Q8WYQ3 142 aaPredicted RBP7.44□□□□□ -1.22
SF3B6-201ENST00000233468 ALKBH7Q9BT30 221 aaPredicted RBP7.44□□□□□ -1.22
SF3B6-201ENST00000233468 CYSLTR1Q9Y271 337 aa7.44□□□□□ -1.22
SF3B6-201ENST00000233468 PYGO1Q9Y3Y4 419 aa7.44□□□□□ -1.22
SF3B6-201ENST00000233468 LINC00959A0A1B0GUT2 108 aa7.43□□□□□ -1.22
SF3B6-201ENST00000233468 GAGE12HA6NDE8 117 aa7.43□□□□□ -1.22
SF3B6-201ENST00000233468 USP17L23D6RBM5 183 aa7.43□□□□□ -1.22
SF3B6-201ENST00000233468 NPSP0C0P6 89 aa7.43□□□□□ -1.22
SF3B6-201ENST00000233468 GCSHP23434 173 aa7.43□□□□□ -1.22
SF3B6-201ENST00000233468 RPL39P62891 51 aaKnown RBP7.43□□□□□ -1.22
SF3B6-201ENST00000233468 PAPPA-AS1Q5QFB9 102 aa7.43□□□□□ -1.22
SF3B6-201ENST00000233468 Q6ZN92 141 aa7.43□□□□□ -1.22
SF3B6-201ENST00000233468 KRTAP9-9Q9BYP9 154 aa7.43□□□□□ -1.22
SF3B6-201ENST00000233468 KRTAP9-4Q9BYQ2 154 aa7.43□□□□□ -1.22
SF3B6-201ENST00000233468 AP5S1Q9NUS5 200 aa7.43□□□□□ -1.22
SF3B6-201ENST00000233468 HERC1Q15751 4861 aa7.42□□□□□ -1.22
SF3B6-201ENST00000233468 CD164L2Q6UWJ8 174 aa7.42□□□□□ -1.22
SF3B6-201ENST00000233468 C2orf66Q6UXQ4 117 aa7.42□□□□□ -1.22
SF3B6-201ENST00000233468 FA2HQ7L5A8 372 aa7.42□□□□□ -1.22
SF3B6-201ENST00000233468 DNAH5Q8TE73 4624 aa7.42□□□□□ -1.22
SF3B6-201ENST00000233468 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.41□□□□□ -1.22
SF3B6-201ENST00000233468 TRAV13-1A0A0B4J241 112 aa7.41□□□□□ -1.22
SF3B6-201ENST00000233468 FUSP35637 526 aaKnown RBP eCLIP7.41□□□□□ -1.22
SF3B6-201ENST00000233468 XCL1P47992 114 aa7.41□□□□□ -1.22
SF3B6-201ENST00000233468 RAB5BP61020 215 aa7.41□□□□□ -1.22
SF3B6-201ENST00000233468 WFDC2Q14508 124 aa7.41□□□□□ -1.22
SF3B6-201ENST00000233468 KRTAP26-1Q6PEX3 210 aa7.41□□□□□ -1.22
SF3B6-201ENST00000233468 C2orf88Q9BSF0 95 aa7.41□□□□□ -1.22
SF3B6-201ENST00000233468 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.4□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 94.3 ms