RNA–Protein interactions for RNA: ENST00000216639.7

VRK1-201, Transcript of vaccinia related kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VRK1, Length 1,745 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-201ENST00000216639 TEP1Q99973 2627 aaKnown RBP12.29□□□□□ -0.44
VRK1-201ENST00000216639 LEPROTO15243 131 aa12.28□□□□□ -0.44
VRK1-201ENST00000216639 LGALS3P17931 250 aaKnown RBP12.28□□□□□ -0.44
VRK1-201ENST00000216639 AMMECR1LQ6DCA0 310 aa12.28□□□□□ -0.44
VRK1-201ENST00000216639 SCGB1D4Q6XE38 83 aa12.28□□□□□ -0.44
VRK1-201ENST00000216639 PRIMA1Q86XR5 153 aa12.28□□□□□ -0.44
VRK1-201ENST00000216639 SBSPONQ8IVN8 264 aa12.28□□□□□ -0.44
VRK1-201ENST00000216639 COX11Q9Y6N1 276 aa12.28□□□□□ -0.44
VRK1-201ENST00000216639 GCSHP23434 173 aa12.28□□□□□ -0.44
VRK1-201ENST00000216639 TMEM101Q96IK0 257 aa12.28□□□□□ -0.44
VRK1-201ENST00000216639 PRO0255Q9UI72 69 aa12.28□□□□□ -0.44
VRK1-201ENST00000216639 J3QQQ9 107 aa12.27□□□□□ -0.45
VRK1-201ENST00000216639 LINC00694P0DN24 101 aa12.27□□□□□ -0.45
VRK1-201ENST00000216639 EGFEM1PQ0D2K5 195 aa12.27□□□□□ -0.45
VRK1-201ENST00000216639 OR5A1Q8NGJ0 315 aa12.27□□□□□ -0.45
VRK1-201ENST00000216639 PLEKHB2Q96CS7 222 aa12.27□□□□□ -0.45
VRK1-201ENST00000216639 HIST1H4GQ99525 98 aa12.27□□□□□ -0.45
VRK1-201ENST00000216639 GEMIN7Q9H840 131 aaKnown RBP12.27□□□□□ -0.45
VRK1-201ENST00000216639 CEND1Q8N111 149 aa12.26□□□□□ -0.45
VRK1-201ENST00000216639 Q8NAQ8 132 aa12.26□□□□□ -0.45
VRK1-201ENST00000216639 TAX1BP3O14907 124 aa12.25□□□□□ -0.45
VRK1-201ENST00000216639 UBE2D1P51668 147 aa12.25□□□□□ -0.45
VRK1-201ENST00000216639 DAD1P61803 113 aa12.25□□□□□ -0.45
VRK1-201ENST00000216639 TM2D2Q9BX73 214 aa12.25□□□□□ -0.45
VRK1-201ENST00000216639 ATRQ13535 2644 aa12.25□□□□□ -0.45
VRK1-201ENST00000216639 NOTCH3Q9UM47 2321 aa12.25□□□□□ -0.45
VRK1-201ENST00000216639 A8MZ25 164 aa12.25□□□□□ -0.45
VRK1-201ENST00000216639 GYPEP15421 78 aa12.25□□□□□ -0.45
VRK1-201ENST00000216639 PTTG1IPP53801 180 aa12.25□□□□□ -0.45
VRK1-201ENST00000216639 TENM1Q9UKZ4 2725 aa12.24□□□□□ -0.45
VRK1-201ENST00000216639 TRBV6-8A0A0A6YYG3 113 aa12.24□□□□□ -0.45
VRK1-201ENST00000216639 DEFB4AO15263 64 aa12.24□□□□□ -0.45
VRK1-201ENST00000216639 SPART-AS1P0CW21 52 aa12.24□□□□□ -0.45
VRK1-201ENST00000216639 TIRAPP58753 221 aa12.24□□□□□ -0.45
VRK1-201ENST00000216639 KRTAP10-11P60412 298 aa12.24□□□□□ -0.45
VRK1-201ENST00000216639 H3BRM9 83 aa12.23□□□□□ -0.45
VRK1-201ENST00000216639 LINC00469Q8N7U9 141 aa12.23□□□□□ -0.45
VRK1-201ENST00000216639 ATP6V0E2Q8NHE4 81 aa12.23□□□□□ -0.45
VRK1-201ENST00000216639 CDC42SE2Q9NRR3 84 aa12.23□□□□□ -0.45
VRK1-201ENST00000216639 PAX4O43316 350 aa12.23□□□□□ -0.45
VRK1-201ENST00000216639 TSPEAR-AS2P59090 65 aa12.23□□□□□ -0.45
VRK1-201ENST00000216639 HERVK_113P63121 156 aa12.23□□□□□ -0.45
VRK1-201ENST00000216639 IGHV3-64A0A075B6Q5 118 aa12.22□□□□□ -0.45
VRK1-201ENST00000216639 IGHV1-58A0A0C4DH39 117 aa12.22□□□□□ -0.45
VRK1-201ENST00000216639 TEX48A0A1B0GUV7 120 aa12.22□□□□□ -0.45
VRK1-201ENST00000216639 ATP5G1P05496 136 aa12.22□□□□□ -0.45
VRK1-201ENST00000216639 Q6ZVH6 145 aa12.22□□□□□ -0.45
VRK1-201ENST00000216639 FXYD2P54710 66 aa12.21□□□□□ -0.45
VRK1-201ENST00000216639 FAM19A3Q7Z5A8 133 aa12.21□□□□□ -0.45
VRK1-201ENST00000216639 CHCHD5Q9BSY4 110 aa12.21□□□□□ -0.45
VRK1-201ENST00000216639 VWFP04275 2813 aa12.21□□□□□ -0.45
VRK1-201ENST00000216639 IGLV5-45A0A087WSX0 123 aa12.2□□□□□ -0.46
VRK1-201ENST00000216639 SMIM13P0DJ93 91 aa12.2□□□□□ -0.46
VRK1-201ENST00000216639 IGHV3-30-3P0DP02 117 aa12.2□□□□□ -0.46
VRK1-201ENST00000216639 SRSF9Q13242 221 aaKnown RBP eCLIP12.2□□□□□ -0.46
VRK1-201ENST00000216639 A0A0J9YY99 117 aa12.2□□□□□ -0.46
VRK1-201ENST00000216639 GAGE6Q13070 117 aa12.2□□□□□ -0.46
VRK1-201ENST00000216639 TRAV13-1A0A0B4J241 112 aa12.18□□□□□ -0.46
VRK1-201ENST00000216639 LINC00242Q5T6M2 205 aa12.18□□□□□ -0.46
VRK1-201ENST00000216639 VSIG2Q96IQ7 327 aa12.18□□□□□ -0.46
VRK1-201ENST00000216639 SPANXB1Q9NS25 103 aaPredicted RBP12.18□□□□□ -0.46
VRK1-201ENST00000216639 CELA1Q9UNI1 258 aa12.18□□□□□ -0.46
VRK1-201ENST00000216639 SPINK8P0C7L1 97 aa12.17□□□□□ -0.46
VRK1-201ENST00000216639 VAMP3Q15836 100 aa12.17□□□□□ -0.46
VRK1-201ENST00000216639 CDKN2A-AS1Q9UH64 79 aa12.17□□□□□ -0.46
VRK1-201ENST00000216639 TRAV8-3A0A0A6YYJ7 113 aa12.17□□□□□ -0.46
VRK1-201ENST00000216639 TMEM238LA0A1B0GVL6 79 aa12.17□□□□□ -0.46
VRK1-201ENST00000216639 C9orf118A6NHY6 69 aa12.17□□□□□ -0.46
VRK1-201ENST00000216639 A6NJY4 79 aa12.17□□□□□ -0.46
VRK1-201ENST00000216639 NHP2Q9NX24 153 aaKnown RBP12.17□□□□□ -0.46
VRK1-201ENST00000216639 F5H768 121 aa12.16□□□□□ -0.46
VRK1-201ENST00000216639 K7EP13 123 aa12.15□□□□□ -0.46
VRK1-201ENST00000216639 RAB37Q96AX2 223 aa12.15□□□□□ -0.46
VRK1-201ENST00000216639 COX6A2Q02221 97 aa12.14□□□□□ -0.47
VRK1-201ENST00000216639 TRAV26-1A0A087WT03 109 aa12.14□□□□□ -0.47
VRK1-201ENST00000216639 TMEM238C9JI98 176 aa12.14□□□□□ -0.47
VRK1-201ENST00000216639 G3V4G9 280 aa12.14□□□□□ -0.47
VRK1-201ENST00000216639 UBE2V1Q13404 147 aa12.13□□□□□ -0.47
VRK1-201ENST00000216639 SH2D6Q7Z4S9 175 aa12.13□□□□□ -0.47
VRK1-201ENST00000216639 NDUFA12Q9UI09 145 aa12.13□□□□□ -0.47
VRK1-201ENST00000216639 HTN3P15516 51 aa12.12□□□□□ -0.47
VRK1-201ENST00000216639 C12orf74Q32Q52 190 aa12.12□□□□□ -0.47
VRK1-201ENST00000216639 ZFAND6Q6FIF0 208 aa12.12□□□□□ -0.47
VRK1-201ENST00000216639 IGLV4-60A0A075B6I1 120 aa12.11□□□□□ -0.47
VRK1-201ENST00000216639 A0A096LPF7 62 aa12.11□□□□□ -0.47
VRK1-201ENST00000216639 A0A0J9YXY3 114 aa12.11□□□□□ -0.47
VRK1-201ENST00000216639 TMEM262E9PQX1 116 aa12.11□□□□□ -0.47
VRK1-201ENST00000216639 H3BUT2 72 aa12.11□□□□□ -0.47
VRK1-201ENST00000216639 MRPL23Q16540 153 aaKnown RBP12.11□□□□□ -0.47
VRK1-201ENST00000216639 A0A1B0GUV1 79 aa12.11□□□□□ -0.47
VRK1-201ENST00000216639 K7ERJ3 54 aa12.11□□□□□ -0.47
VRK1-201ENST00000216639 SAMD5Q5TGI4 173 aa12.11□□□□□ -0.47
VRK1-201ENST00000216639 C10orf126Q8N4M7 172 aa12.11□□□□□ -0.47
VRK1-201ENST00000216639 A0A1B0GWB2 263 aa12.1□□□□□ -0.47
VRK1-201ENST00000216639 IGHV3-30P01768 117 aa12.1□□□□□ -0.47
VRK1-201ENST00000216639 IGHV3-30-5P0DP03 117 aa12.1□□□□□ -0.47
VRK1-201ENST00000216639 RETNQ9HD89 108 aa12.1□□□□□ -0.47
VRK1-201ENST00000216639 ICOSQ9Y6W8 199 aa12.1□□□□□ -0.47
VRK1-201ENST00000216639 IGLV5-39A0A0G2JS06 123 aa12.09□□□□□ -0.47
VRK1-201ENST00000216639 C11orf68Q9H3H3 251 aaKnown RBP12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms