RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 MAP6D1Q9H9H5 199 aa7.68□□□□□ -1.18
USP28-201ENST00000003302 CSMD3Q7Z407 3707 aa7.68□□□□□ -1.18
USP28-201ENST00000003302 SOSTDC1Q6X4U4 206 aa7.68□□□□□ -1.18
USP28-201ENST00000003302 NTM-AS1Q6ZSK4 140 aa7.68□□□□□ -1.18
USP28-201ENST00000003302 CKS1BP61024 79 aa7.68□□□□□ -1.18
USP28-201ENST00000003302 SBSPONQ8IVN8 264 aa7.68□□□□□ -1.18
USP28-201ENST00000003302 NDUFA12Q9UI09 145 aa7.68□□□□□ -1.18
USP28-201ENST00000003302 ODF3L2Q3SX64 289 aa7.67□□□□□ -1.18
USP28-201ENST00000003302 IGHV4-31P0DP07 118 aa7.67□□□□□ -1.18
USP28-201ENST00000003302 Q6ZTI0 123 aa7.67□□□□□ -1.18
USP28-201ENST00000003302 LINC01356Q8N9X3 169 aa7.67□□□□□ -1.18
USP28-201ENST00000003302 RNF183Q96D59 192 aa7.67□□□□□ -1.18
USP28-201ENST00000003302 VSIG2Q96IQ7 327 aa7.67□□□□□ -1.18
USP28-201ENST00000003302 Q96MF0 132 aa7.67□□□□□ -1.18
USP28-201ENST00000003302 LINC01587Q99440 93 aa7.67□□□□□ -1.18
USP28-201ENST00000003302 RHOHQ15669 191 aa7.66□□□□□ -1.18
USP28-201ENST00000003302 Q6YL49 198 aa7.66□□□□□ -1.18
USP28-201ENST00000003302 ERG28Q9UKR5 140 aa7.66□□□□□ -1.18
USP28-201ENST00000003302 TMEM89A2RUT3 159 aa7.66□□□□□ -1.18
USP28-201ENST00000003302 A8MWV9 139 aa7.66□□□□□ -1.18
USP28-201ENST00000003302 C1orf158Q8N1D5 194 aa7.66□□□□□ -1.18
USP28-201ENST00000003302 TNFRSF18Q9Y5U5 241 aa7.66□□□□□ -1.18
USP28-201ENST00000003302 CRYBA4P53673 196 aa7.66□□□□□ -1.18
USP28-201ENST00000003302 CITED2Q99967 270 aaPredicted RBP7.66□□□□□ -1.18
USP28-201ENST00000003302 TRBV20-1A0A075B6N2 111 aa7.65□□□□□ -1.18
USP28-201ENST00000003302 TRAV13-1A0A0B4J241 112 aa7.65□□□□□ -1.18
USP28-201ENST00000003302 TMEM101Q96IK0 257 aa7.65□□□□□ -1.18
USP28-201ENST00000003302 IGHV1-58A0A0C4DH39 117 aa7.65□□□□□ -1.19
USP28-201ENST00000003302 PPDPFLQ8WWR9 84 aa7.65□□□□□ -1.19
USP28-201ENST00000003302 ESM1Q9NQ30 184 aa7.65□□□□□ -1.19
USP28-201ENST00000003302 NHLRC4P0CG21 123 aaPredicted RBP7.64□□□□□ -1.19
USP28-201ENST00000003302 PAPPA-AS1Q5QFB9 102 aa7.64□□□□□ -1.19
USP28-201ENST00000003302 ODF3Q96PU9 254 aa7.64□□□□□ -1.19
USP28-201ENST00000003302 GEMIN7Q9H840 131 aaKnown RBP7.64□□□□□ -1.19
USP28-201ENST00000003302 H7C423 109 aa7.64□□□□□ -1.19
USP28-201ENST00000003302 FSHBP01225 129 aa7.64□□□□□ -1.19
USP28-201ENST00000003302 LINC01620Q4KN68 170 aa7.64□□□□□ -1.19
USP28-201ENST00000003302 PIK3CD-AS1Q5SR53 167 aa7.64□□□□□ -1.19
USP28-201ENST00000003302 J3QR89 54 aa7.63□□□□□ -1.19
USP28-201ENST00000003302 LINC00242Q5T6M2 205 aa7.63□□□□□ -1.19
USP28-201ENST00000003302 NSD1Q96L73 2696 aaPredicted RBP7.63□□□□□ -1.19
USP28-201ENST00000003302 TENM3Q9P273 2699 aa7.63□□□□□ -1.19
USP28-201ENST00000003302 IGKV3OR2-268A0A0C4DH90 116 aa7.63□□□□□ -1.19
USP28-201ENST00000003302 DEFB114Q30KQ6 69 aa7.63□□□□□ -1.19
USP28-201ENST00000003302 KRTAP1-3Q8IUG1 177 aa7.63□□□□□ -1.19
USP28-201ENST00000003302 TRGV1A0A0A0MS02 117 aa7.63□□□□□ -1.19
USP28-201ENST00000003302 GIG44P09565 113 aaPredicted RBP7.63□□□□□ -1.19
USP28-201ENST00000003302 WFDC11Q8NEX6 87 aa7.62□□□□□ -1.19
USP28-201ENST00000003302 ICOSQ9Y6W8 199 aa7.62□□□□□ -1.19
USP28-201ENST00000003302 TRGV11A0A075B6L2 103 aa7.62□□□□□ -1.19
USP28-201ENST00000003302 A0A0B4J2C4 111 aa7.62□□□□□ -1.19
USP28-201ENST00000003302 TTC32Q5I0X7 151 aa7.62□□□□□ -1.19
USP28-201ENST00000003302 C3orf56Q8N813 242 aa7.62□□□□□ -1.19
USP28-201ENST00000003302 SPATA3Q8NHX4 192 aa7.62□□□□□ -1.19
USP28-201ENST00000003302 Q9H8V8 135 aa7.62□□□□□ -1.19
USP28-201ENST00000003302 CIDEAO60543 219 aa7.61□□□□□ -1.19
USP28-201ENST00000003302 ATP6V0E2Q8NHE4 81 aa7.61□□□□□ -1.19
USP28-201ENST00000003302 C9orf129Q5T035 196 aaKnown RBP7.61□□□□□ -1.19
USP28-201ENST00000003302 FAM218AQ96MZ4 157 aa7.61□□□□□ -1.19
USP28-201ENST00000003302 GAGE12JA6NER3 117 aa7.61□□□□□ -1.19
USP28-201ENST00000003302 GAGE4Q13068 117 aa7.61□□□□□ -1.19
USP28-201ENST00000003302 GAGE5Q13069 117 aa7.61□□□□□ -1.19
USP28-201ENST00000003302 PYGO1Q9Y3Y4 419 aa7.61□□□□□ -1.19
USP28-201ENST00000003302 RPL13AP40429 203 aaKnown RBP7.6□□□□□ -1.19
USP28-201ENST00000003302 MIAQ16674 131 aa7.6□□□□□ -1.19
USP28-201ENST00000003302 NOP10Q9NPE3 64 aaKnown RBP7.6□□□□□ -1.19
USP28-201ENST00000003302 ZFAND6Q6FIF0 208 aa7.59□□□□□ -1.19
USP28-201ENST00000003302 CITED1Q99966 193 aa7.59□□□□□ -1.19
USP28-201ENST00000003302 C22orf24Q9Y442 160 aa7.59□□□□□ -1.19
USP28-201ENST00000003302 LYSTQ99698 3801 aa7.59□□□□□ -1.19
USP28-201ENST00000003302 A8MTW9 85 aa7.59□□□□□ -1.19
USP28-201ENST00000003302 TINCRA0A1B0GVN0 87 aa7.59□□□□□ -1.19
USP28-201ENST00000003302 SMIM1B2RUZ4 78 aa7.59□□□□□ -1.19
USP28-201ENST00000003302 RNF152Q8N8N0 203 aa7.59□□□□□ -1.19
USP28-201ENST00000003302 A0A1B0GV72 72 aa7.58□□□□□ -1.2
USP28-201ENST00000003302 DYNLRB2Q8TF09 96 aa7.58□□□□□ -1.2
USP28-201ENST00000003302 TRAV8-4A0A0B4J246 113 aa7.58□□□□□ -1.2
USP28-201ENST00000003302 PLAC8L1A1L4L8 177 aa7.58□□□□□ -1.2
USP28-201ENST00000003302 RPL35AP18077 110 aaKnown RBP7.58□□□□□ -1.2
USP28-201ENST00000003302 ZNF415Q09FC8 603 aa7.57□□□□□ -1.2
USP28-201ENST00000003302 IGLV4-60A0A075B6I1 120 aa7.57□□□□□ -1.2
USP28-201ENST00000003302 Q8N3U1 123 aa7.57□□□□□ -1.2
USP28-201ENST00000003302 MAST4O15021 2626 aa7.57□□□□□ -1.2
USP28-201ENST00000003302 NOTCH1P46531 2555 aa7.57□□□□□ -1.2
USP28-201ENST00000003302 TRBV30A0A0K0K1B3 111 aa7.57□□□□□ -1.2
USP28-201ENST00000003302 C2orf82Q6UX34 121 aa7.57□□□□□ -1.2
USP28-201ENST00000003302 LINC00308Q8TCZ7 52 aa7.57□□□□□ -1.2
USP28-201ENST00000003302 F5H768 121 aa7.56□□□□□ -1.2
USP28-201ENST00000003302 CCDC179H3BU77 68 aa7.56□□□□□ -1.2
USP28-201ENST00000003302 SCGB1A1P11684 91 aa7.56□□□□□ -1.2
USP28-201ENST00000003302 Q9HAA7 133 aa7.56□□□□□ -1.2
USP28-201ENST00000003302 SS18L2Q9UHA2 77 aa7.56□□□□□ -1.2
USP28-201ENST00000003302 GAGE7O76087 117 aa7.56□□□□□ -1.2
USP28-201ENST00000003302 GAGE12FP0CL80 117 aa7.56□□□□□ -1.2
USP28-201ENST00000003302 GAGE12GP0CL81 117 aa7.56□□□□□ -1.2
USP28-201ENST00000003302 GAGE12IP0CL82 117 aa7.56□□□□□ -1.2
USP28-201ENST00000003302 BEAN1Q3B7T3 259 aa7.56□□□□□ -1.2
USP28-201ENST00000003302 SMCR5Q8TEV8 140 aa7.56□□□□□ -1.2
USP28-201ENST00000003302 RS1O15537 224 aa7.55□□□□□ -1.2
USP28-201ENST00000003302 SPANXDQ9BXN6 97 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms