RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 KncnQ307W7 124 aa12.89□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Eda2rQ8BX35 297 aa12.89□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Opn3Q9WUK7 400 aa12.89□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Tmem170bP86050 132 aa12.89□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Sox21Q811W0 276 aa12.89□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Mbnl2Q8C181 373 aaKnown RBP12.89□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Pip4p2Q9CZX7 257 aa12.89□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Parp4E9PYK3 1969 aa12.88□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Igkv14-100A0A0G2JG36 117 aa12.88□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Gm10842Q3U587 122 aa12.88□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Rps2-ps6A0A140T8L5 221 aa12.88□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Wfdc11A2A5H7 82 aa12.88□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Foxf2O54743 446 aa12.88□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Nkx2-8O70584 235 aa12.88□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Dynlt3P56387 116 aa12.88□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Zfp72Q0VFY0 435 aa12.88□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 GaptQ8CB93 157 aa12.88□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 2200002J24RikQ9D807 110 aa12.88□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Nup210Q9QY81 1886 aaKnown RBP12.88□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Igkv14-111A0A140T8P9 117 aa12.88□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Ins2P01326 110 aa12.88□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 C730034F03RikQ8BGL5 111 aa12.88□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Olfr1012Q8VFJ7 311 aa12.88□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Slc25a15Q9WVD5 301 aa12.88□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Gm9945Q8BNZ3 91 aa12.88□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Tmem219Q9D123 240 aa12.88□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Ighv7-2A0A0A6YX91 119 aa12.87□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 TbpP29037 316 aa12.87□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Atxn7l1Q9CZ05 146 aa12.87□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 CenpeQ6RT24 2474 aaKnown RBP12.87□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 PpyP10601 100 aa12.87□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 P18525 117 aa12.87□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Vsig8Q6P3A4 417 aa12.87□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Prss41Q920S2 322 aa12.87□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Rnf115Q9D0C1 305 aa12.87□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Tmem126aQ9D8Y1 196 aa12.87□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Plxnb1Q8CJH3 2119 aa12.87□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 UngP97931 306 aa12.87□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Shisa6Q3UH99 525 aa12.87□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Derl1Q99J56 251 aa12.87□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Ahctf1Q8CJF7 2243 aaKnown RBP12.87□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Trip12G5E870 2025 aaKnown RBP12.87□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Armcx4E9PWM3 2356 aa12.87□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 H2al1nQ497L1 109 aa12.87□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Olfr33Q8VGX7 318 aa12.87□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Ighv7-4A0A0A6YXL5 121 aa12.86□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Gm16442D3YZG3 307 aa12.86□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 P04946 108 aa12.86□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Atp5g2P56383 146 aa12.86□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Dtx1Q61010 627 aa12.86□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Snrnp40Q6PE01 358 aa12.86□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Cdcp2Q8BQH6 427 aa12.86□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Fmc1Q9CR13 113 aa12.86□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Pf4Q9Z126 105 aa12.86□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Trav6-1A0A075B5Z8 112 aa12.86□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Cnn3Q9DAW9 330 aaKnown RBP12.86□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Sptbn1Q62261 2363 aaKnown RBP12.86□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Gm12830F6XVH0 157 aa12.86□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Fgf5P15656 264 aa12.86□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Trdv2-1A0A0G2JGB9 116 aa12.86□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Psmg4P0C7N9 123 aa12.86□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 CirbpP60824 172 aaKnown RBP12.86□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Trdv2-2Q5R1A4 116 aa12.86□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Znf474Q6V5K9 347 aa12.86□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Olfr553Q7TRS6 326 aa12.86□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Olfr491Q8VG06 310 aa12.86□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Ighv1-34A0A075B5V2 117 aa12.85□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Gm4744D3Z3S5 154 aa12.85□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Tmem189Q99LQ7 271 aa12.85□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Hyls1Q9CXX0 307 aa12.85□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Klk1b22P15948 259 aa12.85□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 OstcQ78XF5 149 aa12.85□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Sh3bgrl3Q91VW3 93 aa12.85□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Olfr1369-ps1A0A140T8K7 317 aa12.85□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Igkv13-84A0A140T8N3 115 aa12.85□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Olfr263Q7TQT8 317 aa12.85□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Olfr1178Q7TR20 323 aa12.85□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Zfp407G3UVV3 2246 aa12.85□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Gm20458E9PXJ7 78 aa12.84□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Cxcl13O55038 109 aa12.84□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 P01660 111 aa12.84□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Znf260Q62513 407 aa12.84□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Mob3bQ8VE04 216 aa12.84□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Olfr1258Q8VGN6 311 aa12.84□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Qrich2A0A140LIY9 2337 aa12.84□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Olfr177E9Q7W1 309 aa12.84□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Smim19Q80ZU4 107 aa12.84□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Erg28Q9ERY9 140 aa12.84□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 BC030500E9Q6W0 185 aa12.84□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Polr3kQ9CQZ7 108 aa12.84□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 PcntP48725 2898 aa12.84□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Gm6525A0A0A6YW33 106 aa12.84□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Spint3Q3UW09 88 aa12.84□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Tmem160Q9D938 188 aa12.84□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 PifoQ9D9W1 207 aa12.84□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Znf22Q9ERU3 237 aa12.84□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Gm14214V9GX35 225 aa12.84□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Greb1Q3UHK3 1954 aa12.84□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Tmem200bD3Z0P8 284 aa12.83□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Adamts17E9Q4D1 1122 aa12.83□□□□□ -0.35
Retrieved 100 of 22,080 RNA–protein pairs in 106.1 ms