RNA–Protein interactions for RNA: YDL216C

RRI1, Transcript of Catalytic subunit of the COP9 signalosome (CSN) complex, yeast

Gene RRI1, Length 1,323 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RRI1	YDL216C	AAC1	P04710	309 aa		5.08	□□□□□ -1.6
RRI1	YDL216C	RPL7A	P05737	244 aa	Known RBP	5.08	□□□□□ -1.6
RRI1	YDL216C	ADH4	P10127	382 aa		5.08	□□□□□ -1.6
RRI1	YDL216C	PMA2	P19657	947 aa		5.08	□□□□□ -1.6
RRI1	YDL216C	SDH8	P38345	138 aa		5.08	□□□□□ -1.6
RRI1	YDL216C	VFA1	P40080	203 aa		5.08	□□□□□ -1.6
RRI1	YDL216C	COS12	P53053	380 aa		5.08	□□□□□ -1.6
RRI1	YDL216C	MLC2	Q06580	163 aa		5.08	□□□□□ -1.6
RRI1	YDL216C	CRD1	Q07560	283 aa		5.08	□□□□□ -1.6
RRI1	YDL216C	CRT10	Q08226	957 aa		5.08	□□□□□ -1.6
RRI1	YDL216C	RPL7B	Q12213	244 aa	Known RBP	5.08	□□□□□ -1.6
RRI1	YDL216C	LEU2	P04173	364 aa	Predicted RBP	5.07	□□□□□ -1.6
RRI1	YDL216C	RNR3	P21672	869 aa	Known RBP	5.07	□□□□□ -1.6
RRI1	YDL216C	AAD3	P25612	363 aa		5.07	□□□□□ -1.6
RRI1	YDL216C	YPT10	P38146	199 aa		5.07	□□□□□ -1.6
RRI1	YDL216C	IMA5	P40884	581 aa		5.07	□□□□□ -1.6
RRI1	YDL216C	OPT1	P40897	799 aa		5.07	□□□□□ -1.6
RRI1	YDL216C	IDS2	P46958	469 aa		5.07	□□□□□ -1.6
RRI1	YDL216C	CEG1	Q01159	459 aa	Predicted RBP	5.07	□□□□□ -1.6
RRI1	YDL216C	ENT2	Q05785	613 aa		5.07	□□□□□ -1.6
RRI1	YDL216C	COQ11	Q05892	277 aa		5.07	□□□□□ -1.6
RRI1	YDL216C	YNL162W-A	Q3E7A8	72 aa		5.07	□□□□□ -1.6
RRI1	YDL216C	CTT1	P06115	562 aa		5.06	□□□□□ -1.6
RRI1	YDL216C	PTP2	P29461	750 aa		5.06	□□□□□ -1.6
RRI1	YDL216C	CDC5	P32562	705 aa		5.06	□□□□□ -1.6
RRI1	YDL216C	STB5	P38699	743 aa		5.06	□□□□□ -1.6
RRI1	YDL216C	TRS31	Q03337	283 aa		5.06	□□□□□ -1.6
RRI1	YDL216C	AAD4	Q07747	329 aa		5.06	□□□□□ -1.6
RRI1	YDL216C	NYV1	Q12255	253 aa		5.06	□□□□□ -1.6
RRI1	YDL216C	GAL1	P04385	528 aa		5.05	□□□□□ -1.6
RRI1	YDL216C	HEM1	P09950	548 aa	Predicted RBP	5.05	□□□□□ -1.6
RRI1	YDL216C	MRPL9	P31334	269 aa		5.05	□□□□□ -1.6
RRI1	YDL216C	RRP8	P38961	392 aa	Known RBP	5.05	□□□□□ -1.6
RRI1	YDL216C	POL31	P46957	487 aa		5.05	□□□□□ -1.6
RRI1	YDL216C	PIP2	P52960	996 aa		5.05	□□□□□ -1.6
RRI1	YDL216C	TEP1	P53916	434 aa		5.05	□□□□□ -1.6
RRI1	YDL216C	YOL057W	Q08225	711 aa		5.05	□□□□□ -1.6
RRI1	YDL216C	YOL114C	Q12322	202 aa		5.05	□□□□□ -1.6
RRI1	YDL216C	YPK1	P12688	680 aa	Known RBP	5.04	□□□□□ -1.6
RRI1	YDL216C	HOM2	P13663	365 aa	Known RBP	5.04	□□□□□ -1.6
RRI1	YDL216C	ORC2	P32833	620 aa		5.04	□□□□□ -1.6
RRI1	YDL216C	WAR1	Q03631	944 aa		5.04	□□□□□ -1.6
RRI1	YDL216C	VPS64	Q03944	604 aa		5.04	□□□□□ -1.6
RRI1	YDL216C	MRI1	Q06489	411 aa	Known RBP	5.04	□□□□□ -1.6
RRI1	YDL216C	OSW1	Q08692	278 aa		5.04	□□□□□ -1.6
RRI1	YDL216C	RPC34	P32910	317 aa		5.03	□□□□□ -1.6
RRI1	YDL216C	RAD26	P40352	1085 aa		5.03	□□□□□ -1.6
RRI1	YDL216C	YFL015C	P43578	164 aa		5.03	□□□□□ -1.6
RRI1	YDL216C	PAP2	P53632	584 aa	Known RBP	5.03	□□□□□ -1.6
RRI1	YDL216C	RRP6	Q12149	733 aa	Known RBP	5.03	□□□□□ -1.6
RRI1	YDL216C	YEF3	P16521	1044 aa	Known RBP	5.02	□□□□□ -1.61
RRI1	YDL216C	YCR061W	P25639	631 aa		5.02	□□□□□ -1.61
RRI1	YDL216C	LNP1	P38878	278 aa		5.02	□□□□□ -1.61
RRI1	YDL216C	MAM1	P40065	302 aa		5.02	□□□□□ -1.61
RRI1	YDL216C	LAS21	P40367	830 aa		5.02	□□□□□ -1.61
RRI1	YDL216C	HIS6	P40545	261 aa		5.02	□□□□□ -1.61
RRI1	YDL216C	SNM1	P40993	198 aa		5.02	□□□□□ -1.61
RRI1	YDL216C	QRI7	P43122	407 aa		5.02	□□□□□ -1.61
RRI1	YDL216C	MAD3	P47074	515 aa		5.02	□□□□□ -1.61
RRI1	YDL216C	ACS1	Q01574	713 aa		5.02	□□□□□ -1.61
RRI1	YDL216C	MRN1	Q08925	612 aa	Known RBP RIP-Chip data	5.02	□□□□□ -1.61	not detected
RRI1	YDL216C	AI5_ALPHA	Q9ZZX1	630 aa		5.02	□□□□□ -1.61
RRI1	YDL216C	RPS7A	P26786	190 aa	Known RBP	5.01	□□□□□ -1.61
RRI1	YDL216C	PRE2	P30656	287 aa	Known RBP	5.01	□□□□□ -1.61
RRI1	YDL216C	TAX4	P47030	604 aa		5.01	□□□□□ -1.61
RRI1	YDL216C	HOT13	P36078	116 aa		5	□□□□□ -1.61
RRI1	YDL216C	APD1	P38281	316 aa		5	□□□□□ -1.61
RRI1	YDL216C	STT3	P39007	718 aa	Known RBP	5	□□□□□ -1.61
RRI1	YDL216C	TDA10	P42938	290 aa		5	□□□□□ -1.61
RRI1	YDL216C	IOC4	Q04213	475 aa		5	□□□□□ -1.61
RRI1	YDL216C	BRE1	Q07457	700 aa	Known RBP	5	□□□□□ -1.61
RRI1	YDL216C	PCL8	Q08966	492 aa		5	□□□□□ -1.61
RRI1	YDL216C	AHA1	Q12449	350 aa	Known RBP	5	□□□□□ -1.61
RRI1	YDL216C	PIF1	P07271	859 aa		4.99	□□□□□ -1.61
RRI1	YDL216C	MSS18	P08593	268 aa		4.99	□□□□□ -1.61
RRI1	YDL216C	SIR1	P21691	654 aa		4.99	□□□□□ -1.61
RRI1	YDL216C	APM3	P38153	483 aa		4.99	□□□□□ -1.61
RRI1	YDL216C	EXO1	P39875	702 aa		4.99	□□□□□ -1.61
RRI1	YDL216C	VPS27	P40343	622 aa	Known RBP	4.99	□□□□□ -1.61
RRI1	YDL216C	YJL043W	P47053	257 aa		4.99	□□□□□ -1.61
RRI1	YDL216C	YNL092W	P53934	400 aa		4.99	□□□□□ -1.61
RRI1	YDL216C	EIS1	Q05050	843 aa	Known RBP	4.99	□□□□□ -1.61
RRI1	YDL216C	IRC3	Q06683	689 aa		4.99	□□□□□ -1.61
RRI1	YDL216C	AIM6	Q07716	390 aa		4.99	□□□□□ -1.61
RRI1	YDL216C	YER175W-A	Q8TGU4	54 aa		4.99	□□□□□ -1.61
RRI1	YDL216C	CHO2	P05374	869 aa	Known RBP	4.98	□□□□□ -1.61
RRI1	YDL216C	ERG11	P10614	530 aa		4.98	□□□□□ -1.61
RRI1	YDL216C	MDM10	P18409	493 aa		4.98	□□□□□ -1.61
RRI1	YDL216C	KGD2	P19262	463 aa	Predicted RBP	4.98	□□□□□ -1.61
RRI1	YDL216C	MSH1	P25846	959 aa		4.98	□□□□□ -1.61
RRI1	YDL216C	FRD1	P32614	470 aa	Known RBP	4.98	□□□□□ -1.61
RRI1	YDL216C	COG2	P53271	262 aa		4.98	□□□□□ -1.61
RRI1	YDL216C	SEG1	Q04279	960 aa		4.98	□□□□□ -1.61
RRI1	YDL216C	CRF1	Q04930	467 aa		4.98	□□□□□ -1.61
RRI1	YDL216C	THI7	Q05998	598 aa		4.98	□□□□□ -1.61
RRI1	YDL216C	MIS1	P09440	975 aa	Known RBP	4.97	□□□□□ -1.61
RRI1	YDL216C	AQY1	P0CD91	305 aa		4.97	□□□□□ -1.61
RRI1	YDL216C	GSY2	P27472	705 aa		4.97	□□□□□ -1.61
RRI1	YDL216C	GDA1	P32621	518 aa		4.97	□□□□□ -1.61
RRI1	YDL216C	YHL041W	P38730	149 aa		4.97	□□□□□ -1.61

Retrieved 100 of 5,963 RNA–protein pairs in 37.2 ms