RNA–Protein interactions for RNA: ENST00000637285.1

SCN1A-215, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 100 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-215ENST00000637285 SLFN14P0C7P3 912 aa3.36□□□□□ -1.87
SCN1A-215ENST00000637285 HCLS1P14317 486 aaPredicted RBP3.36□□□□□ -1.87
SCN1A-215ENST00000637285 ID3Q02535 119 aa3.36□□□□□ -1.87
SCN1A-215ENST00000637285 ELOAQ14241 798 aaKnown RBP3.36□□□□□ -1.87
SCN1A-215ENST00000637285 TTLL4Q14679 1199 aa3.36□□□□□ -1.87
SCN1A-215ENST00000637285 TMEM164Q5U3C3 297 aa3.36□□□□□ -1.87
SCN1A-215ENST00000637285 CCNJLQ8IV13 435 aa3.36□□□□□ -1.87
SCN1A-215ENST00000637285 HELQQ8TDG4 1101 aa3.36□□□□□ -1.87
SCN1A-215ENST00000637285 C20orf173Q96LM9 149 aa3.36□□□□□ -1.87
SCN1A-215ENST00000637285 CSRNP1Q96S65 589 aa3.36□□□□□ -1.87
SCN1A-215ENST00000637285 SSU72Q9NP77 194 aaKnown RBP3.36□□□□□ -1.87
SCN1A-215ENST00000637285 DISC1Q9NRI5 854 aa3.36□□□□□ -1.87
SCN1A-215ENST00000637285 SNX11Q9Y5W9 270 aa3.36□□□□□ -1.87
SCN1A-215ENST00000637285 A0A1W2PP55 124 aa3.35□□□□□ -1.87
SCN1A-215ENST00000637285 NUAK1O60285 661 aa3.35□□□□□ -1.87
SCN1A-215ENST00000637285 B3GALT4O96024 378 aa3.35□□□□□ -1.87
SCN1A-215ENST00000637285 ATP2B4P23634 1241 aa3.35□□□□□ -1.87
SCN1A-215ENST00000637285 CLP1Q92989 425 aaKnown RBP3.35□□□□□ -1.87
SCN1A-215ENST00000637285 HEXIM2Q96MH2 286 aaKnown RBP3.35□□□□□ -1.87
SCN1A-215ENST00000637285 TCF12Q99081 682 aa3.35□□□□□ -1.87
SCN1A-215ENST00000637285 TNKS2Q9H2K2 1166 aa3.35□□□□□ -1.87
SCN1A-215ENST00000637285 CCDC86Q9H6F5 360 aaKnown RBP3.35□□□□□ -1.87
SCN1A-215ENST00000637285 ZFYVE28Q9HCC9 887 aa3.35□□□□□ -1.87
SCN1A-215ENST00000637285 DCP1AQ9NPI6 582 aaPredicted RBP3.35□□□□□ -1.87
SCN1A-215ENST00000637285 PCOLCE2Q9UKZ9 415 aa3.35□□□□□ -1.87
SCN1A-215ENST00000637285 ZNF157P51786 506 aaPredicted RBP3.34□□□□□ -1.87
SCN1A-215ENST00000637285 EHHADHQ08426 723 aa3.34□□□□□ -1.87
SCN1A-215ENST00000637285 AP3B2Q13367 1082 aa3.34□□□□□ -1.87
SCN1A-215ENST00000637285 PHF6Q8IWS0 365 aaKnown RBP eCLIP3.34□□□□□ -1.87
SCN1A-215ENST00000637285 IRF2BPLQ9H1B7 796 aa3.34□□□□□ -1.87
SCN1A-215ENST00000637285 EPB41L4BQ9H329 900 aa3.34□□□□□ -1.87
SCN1A-215ENST00000637285 CARS2Q9HA77 564 aaKnown RBP3.34□□□□□ -1.87
SCN1A-215ENST00000637285 CD320Q9NPF0 282 aa3.34□□□□□ -1.87
SCN1A-215ENST00000637285 ZNF777Q9ULD5 760 aaPredicted RBP3.34□□□□□ -1.87
SCN1A-215ENST00000637285 SMG5Q9UPR3 1016 aaKnown RBP3.34□□□□□ -1.87
SCN1A-215ENST00000637285 SYNGAP1Q96PV0 1343 aa3.34□□□□□ -1.87
SCN1A-215ENST00000637285 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP3.33□□□□□ -1.88
SCN1A-215ENST00000637285 ETV2O00321 342 aaPredicted RBP3.33□□□□□ -1.88
SCN1A-215ENST00000637285 ZNF862O60290 1169 aa3.33□□□□□ -1.88
SCN1A-215ENST00000637285 FOXD2O60548 495 aaPredicted RBP3.33□□□□□ -1.88
SCN1A-215ENST00000637285 BMP7P18075 431 aa3.33□□□□□ -1.88
SCN1A-215ENST00000637285 MTMR3Q13615 1198 aa3.33□□□□□ -1.88
SCN1A-215ENST00000637285 ALKBH2Q6NS38 261 aa3.33□□□□□ -1.88
SCN1A-215ENST00000637285 DBX2Q6ZNG2 339 aa3.33□□□□□ -1.88
SCN1A-215ENST00000637285 SPACA3Q8IXA5 215 aa3.33□□□□□ -1.88
SCN1A-215ENST00000637285 KCNN1Q92952 543 aa3.33□□□□□ -1.88
SCN1A-215ENST00000637285 ISL2Q96A47 359 aa3.33□□□□□ -1.88
SCN1A-215ENST00000637285 ZCCHC4Q9H5U6 513 aa3.33□□□□□ -1.88
SCN1A-215ENST00000637285 ZNF576Q9H609 170 aa3.33□□□□□ -1.88
SCN1A-215ENST00000637285 PARD6AQ9NPB6 346 aa3.33□□□□□ -1.88
SCN1A-215ENST00000637285 SLAIN2Q9P270 581 aa3.33□□□□□ -1.88
SCN1A-215ENST00000637285 GTF2IRD1Q9UHL9 959 aa3.33□□□□□ -1.88
SCN1A-215ENST00000637285 PITPNM2Q9BZ72 1349 aa3.33□□□□□ -1.88
SCN1A-215ENST00000637285 GNAT3A8MTJ3 354 aa3.32□□□□□ -1.88
SCN1A-215ENST00000637285 NEFMP07197 916 aa3.32□□□□□ -1.88
SCN1A-215ENST00000637285 LINC00310P59036 64 aa3.32□□□□□ -1.88
SCN1A-215ENST00000637285 NKPD1Q17RQ9 610 aa3.32□□□□□ -1.88
SCN1A-215ENST00000637285 GTF3C2Q8WUA4 911 aaPredicted RBP3.32□□□□□ -1.88
SCN1A-215ENST00000637285 C19orf73Q9NVV2 129 aa3.32□□□□□ -1.88
SCN1A-215ENST00000637285 ATG7O95352 703 aa3.31□□□□□ -1.88
SCN1A-215ENST00000637285 MED14OSP0DP75 135 aa3.31□□□□□ -1.88
SCN1A-215ENST00000637285 GDNFP39905 211 aa3.31□□□□□ -1.88
SCN1A-215ENST00000637285 USP5P45974 858 aa3.31□□□□□ -1.88
SCN1A-215ENST00000637285 KIF4BQ2VIQ3 1234 aa3.31□□□□□ -1.88
SCN1A-215ENST00000637285 FAM214BQ7L5A3 538 aa3.31□□□□□ -1.88
SCN1A-215ENST00000637285 GALNT12Q8IXK2 581 aa3.31□□□□□ -1.88
SCN1A-215ENST00000637285 KCNB2Q92953 911 aa3.31□□□□□ -1.88
SCN1A-215ENST00000637285 EHD4Q9H223 541 aa3.31□□□□□ -1.88
SCN1A-215ENST00000637285 ATP13A1Q9HD20 1204 aa3.31□□□□□ -1.88
SCN1A-215ENST00000637285 A0A0G2JLL6 359 aaPredicted RBP3.3□□□□□ -1.88
SCN1A-215ENST00000637285 IGF2BP3O00425 579 aaKnown RBP eCLIP3.3□□□□□ -1.88
SCN1A-215ENST00000637285 GSTP1P09211 210 aaKnown RBP3.3□□□□□ -1.88
SCN1A-215ENST00000637285 SYN1P17600 705 aa3.3□□□□□ -1.88
SCN1A-215ENST00000637285 GLDCP23378 1020 aa3.3□□□□□ -1.88
SCN1A-215ENST00000637285 CLCN7P51798 805 aa3.3□□□□□ -1.88
SCN1A-215ENST00000637285 HNRNPUQ00839 825 aaKnown RBP eCLIP3.3□□□□□ -1.88
SCN1A-215ENST00000637285 CDKAL1Q5VV42 579 aa3.3□□□□□ -1.88
SCN1A-215ENST00000637285 USPL1Q5W0Q7 1092 aa3.3□□□□□ -1.88
SCN1A-215ENST00000637285 ABHD4Q8TB40 342 aa3.3□□□□□ -1.88
SCN1A-215ENST00000637285 PRDM10Q9NQV6 1147 aa3.3□□□□□ -1.88
SCN1A-215ENST00000637285 CCDC87Q9NVE4 849 aa3.3□□□□□ -1.88
SCN1A-215ENST00000637285 PCDHGC5Q9Y5F6 944 aa3.3□□□□□ -1.88
SCN1A-215ENST00000637285 FAM155AB1AL88 458 aaPredicted RBP3.29□□□□□ -1.88
SCN1A-215ENST00000637285 FZD6O60353 706 aa3.29□□□□□ -1.88
SCN1A-215ENST00000637285 RAC2P15153 192 aa3.29□□□□□ -1.88
SCN1A-215ENST00000637285 ITPKAP23677 461 aa3.29□□□□□ -1.88
SCN1A-215ENST00000637285 NFIXQ14938 502 aa3.29□□□□□ -1.88
SCN1A-215ENST00000637285 KIAA0319Q5VV43 1072 aa3.29□□□□□ -1.88
SCN1A-215ENST00000637285 TTC6Q86TZ1 520 aa3.29□□□□□ -1.88
SCN1A-215ENST00000637285 GGNQ86UU5 652 aa3.29□□□□□ -1.88
SCN1A-215ENST00000637285 NPAS4Q8IUM7 802 aa3.29□□□□□ -1.88
SCN1A-215ENST00000637285 HSPA12BQ96MM6 686 aa3.29□□□□□ -1.88
SCN1A-215ENST00000637285 SLC26A8Q96RN1 970 aa3.29□□□□□ -1.88
SCN1A-215ENST00000637285 FAM13AO94988 1023 aa3.28□□□□□ -1.88
SCN1A-215ENST00000637285 SRPK2P78362 688 aaKnown RBP3.28□□□□□ -1.88
SCN1A-215ENST00000637285 FAAP100Q0VG06 881 aa3.28□□□□□ -1.88
SCN1A-215ENST00000637285 PRRT2Q7Z6L0 340 aaPredicted RBP3.28□□□□□ -1.88
SCN1A-215ENST00000637285 GJD3Q8N144 294 aa3.28□□□□□ -1.88
SCN1A-215ENST00000637285 RNF214Q8ND24 703 aa3.28□□□□□ -1.88
SCN1A-215ENST00000637285 FOXQ1Q9C009 403 aa3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms