RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 USP17L13C9JLJ4 530 aa3.89□□□□□ -1.79
VIM-210ENST00000637053 USP17L12C9JPN9 530 aa3.89□□□□□ -1.79
VIM-210ENST00000637053 USP17L11C9JVI0 530 aa3.89□□□□□ -1.79
VIM-210ENST00000637053 USP17L21D6R901 530 aa3.89□□□□□ -1.79
VIM-210ENST00000637053 USP17L18D6R9N7 530 aa3.89□□□□□ -1.79
VIM-210ENST00000637053 USP17L22D6RA61 530 aa3.89□□□□□ -1.79
VIM-210ENST00000637053 USP17L17D6RBQ6 530 aa3.89□□□□□ -1.79
VIM-210ENST00000637053 USP17L19D6RCP7 530 aa3.89□□□□□ -1.79
VIM-210ENST00000637053 USP17L20D6RJB6 530 aa3.89□□□□□ -1.79
VIM-210ENST00000637053 TNFRSF10BO14763 440 aa3.89□□□□□ -1.79
VIM-210ENST00000637053 RECKO95980 971 aa3.89□□□□□ -1.79
VIM-210ENST00000637053 NFICP08651 508 aa3.89□□□□□ -1.79
VIM-210ENST00000637053 CD8BP10966 210 aa3.89□□□□□ -1.79
VIM-210ENST00000637053 RFX1P22670 979 aa3.89□□□□□ -1.79
VIM-210ENST00000637053 CD96P40200 585 aa3.89□□□□□ -1.79
VIM-210ENST00000637053 SOX4Q06945 474 aaPredicted RBP3.89□□□□□ -1.79
VIM-210ENST00000637053 USP17L24Q0WX57 530 aa3.89□□□□□ -1.79
VIM-210ENST00000637053 ECM1Q16610 540 aa3.89□□□□□ -1.79
VIM-210ENST00000637053 VN1R5Q7Z5H4 357 aa3.89□□□□□ -1.79
VIM-210ENST00000637053 NPAS4Q8IUM7 802 aa3.89□□□□□ -1.79
VIM-210ENST00000637053 LRRC56Q8IYG6 542 aaPredicted RBP3.89□□□□□ -1.79
VIM-210ENST00000637053 BHLHE22Q8NFJ8 381 aaPredicted RBP3.89□□□□□ -1.79
VIM-210ENST00000637053 PNISRQ8TF01 805 aaKnown RBP3.89□□□□□ -1.79
VIM-210ENST00000637053 PIK3R5Q8WYR1 880 aa3.89□□□□□ -1.79
VIM-210ENST00000637053 UTP3Q9NQZ2 479 aaKnown RBP eCLIP3.89□□□□□ -1.79
VIM-210ENST00000637053 GNL3LQ9NVN8 582 aaKnown RBP3.89□□□□□ -1.79
VIM-210ENST00000637053 DZANK1Q9NVP4 752 aa3.89□□□□□ -1.79
VIM-210ENST00000637053 LMCD1Q9NZU5 365 aa3.89□□□□□ -1.79
VIM-210ENST00000637053 CNTN3Q9P232 1028 aa3.89□□□□□ -1.79
VIM-210ENST00000637053 ZNF503-AS2A6NEH8 195 aa3.88□□□□□ -1.79
VIM-210ENST00000637053 TMEM88BA6NKF7 163 aa3.88□□□□□ -1.79
VIM-210ENST00000637053 FAM177BA6PVY3 158 aa3.88□□□□□ -1.79
VIM-210ENST00000637053 DYNC1LI2O43237 492 aaPredicted RBP3.88□□□□□ -1.79
VIM-210ENST00000637053 EPB41L2O43491 1005 aaKnown RBP3.88□□□□□ -1.79
VIM-210ENST00000637053 WDHD1O75717 1129 aaPredicted RBP3.88□□□□□ -1.79
VIM-210ENST00000637053 ZSCAN22P10073 491 aaPredicted RBP3.88□□□□□ -1.79
VIM-210ENST00000637053 IBSPP21815 317 aaPredicted RBP3.88□□□□□ -1.79
VIM-210ENST00000637053 BDNFP23560 247 aa3.88□□□□□ -1.79
VIM-210ENST00000637053 SSFA2P28290 1259 aa3.88□□□□□ -1.79
VIM-210ENST00000637053 RAP1GAPP47736 663 aa3.88□□□□□ -1.79
VIM-210ENST00000637053 CCDC96Q2M329 555 aa3.88□□□□□ -1.79
VIM-210ENST00000637053 EXOSC6Q5RKV6 272 aaKnown RBP3.88□□□□□ -1.79
VIM-210ENST00000637053 CASC1Q6TDU7 716 aa3.88□□□□□ -1.79
VIM-210ENST00000637053 SEZ6L2Q6UXD5 910 aa3.88□□□□□ -1.79
VIM-210ENST00000637053 C11orf96Q7Z7L8 435 aa3.88□□□□□ -1.79
VIM-210ENST00000637053 AMOTL1Q8IY63 956 aa3.88□□□□□ -1.79
VIM-210ENST00000637053 CCDC146Q8IYE0 955 aa3.88□□□□□ -1.79
VIM-210ENST00000637053 CXorf38Q8TB03 319 aa3.88□□□□□ -1.79
VIM-210ENST00000637053 TOX2Q96NM4 488 aa3.88□□□□□ -1.79
VIM-210ENST00000637053 SENP7Q9BQF6 1050 aa3.88□□□□□ -1.79
VIM-210ENST00000637053 SEMA6CQ9H3T2 930 aa3.88□□□□□ -1.79
VIM-210ENST00000637053 C1GALT1Q9NS00 363 aa3.88□□□□□ -1.79
VIM-210ENST00000637053 TMEM63CQ9P1W3 806 aa3.88□□□□□ -1.79
VIM-210ENST00000637053 SALL4Q9UJQ4 1053 aa3.88□□□□□ -1.79
VIM-210ENST00000637053 TBX22Q9Y458 520 aa3.88□□□□□ -1.79
VIM-210ENST00000637053 ACTL7BQ9Y614 415 aa3.88□□□□□ -1.79
VIM-210ENST00000637053 LRRC10BA6NIK2 292 aa3.87□□□□□ -1.79
VIM-210ENST00000637053 FAM196BA6NMK8 535 aa3.87□□□□□ -1.79
VIM-210ENST00000637053 PDE2AO00408 941 aaPredicted RBP3.87□□□□□ -1.79
VIM-210ENST00000637053 ZBTB39O15060 712 aa3.87□□□□□ -1.79
VIM-210ENST00000637053 ZNF500O60304 480 aaPredicted RBP3.87□□□□□ -1.79
VIM-210ENST00000637053 GYS2P54840 703 aa3.87□□□□□ -1.79
VIM-210ENST00000637053 RHBDL3P58872 404 aa3.87□□□□□ -1.79
VIM-210ENST00000637053 CFAP70Q5T0N1 1121 aa3.87□□□□□ -1.79
VIM-210ENST00000637053 SIAH1Q8IUQ4 282 aa3.87□□□□□ -1.79
VIM-210ENST00000637053 CCAR1Q8IX12 1150 aaKnown RBP3.87□□□□□ -1.79
VIM-210ENST00000637053 STK11IPQ8N1F8 1099 aa3.87□□□□□ -1.79
VIM-210ENST00000637053 ABCF1Q8NE71 845 aaKnown RBP eCLIP3.87□□□□□ -1.79
VIM-210ENST00000637053 GPR152Q8TDT2 470 aa3.87□□□□□ -1.79
VIM-210ENST00000637053 YTHDC1Q96MU7 727 aaKnown RBP3.87□□□□□ -1.79
VIM-210ENST00000637053 BRINP2Q9C0B6 783 aa3.87□□□□□ -1.79
VIM-210ENST00000637053 WWC3Q9ULE0 1092 aa3.87□□□□□ -1.79
VIM-210ENST00000637053 NOP58Q9Y2X3 529 aaKnown RBP3.87□□□□□ -1.79
VIM-210ENST00000637053 U3KQE9 123 aa3.87□□□□□ -1.79
VIM-210ENST00000637053 IQCJ-SCHIP1C9J366 451 aaPredicted RBP3.86□□□□□ -1.79
VIM-210ENST00000637053 NRDCO43847 1150 aa3.86□□□□□ -1.79
VIM-210ENST00000637053 ZRANB2O95218 330 aaKnown RBP eCLIP3.86□□□□□ -1.79
VIM-210ENST00000637053 TSPAN15O95858 294 aa3.86□□□□□ -1.79
VIM-210ENST00000637053 KRT1P04264 644 aa3.86□□□□□ -1.79
VIM-210ENST00000637053 ADH5P11766 374 aa3.86□□□□□ -1.79
VIM-210ENST00000637053 RAB6AP20340 208 aa3.86□□□□□ -1.79
VIM-210ENST00000637053 ERCC5P28715 1186 aaPredicted RBP3.86□□□□□ -1.79
VIM-210ENST00000637053 ZAP70P43403 619 aa3.86□□□□□ -1.79
VIM-210ENST00000637053 ARL4DP49703 201 aa3.86□□□□□ -1.79
VIM-210ENST00000637053 CYP27A1Q02318 531 aa3.86□□□□□ -1.79
VIM-210ENST00000637053 IKBKEQ14164 716 aa3.86□□□□□ -1.79
VIM-210ENST00000637053 MLANAQ16655 118 aa3.86□□□□□ -1.79
VIM-210ENST00000637053 PLEKHG6Q3KR16 790 aa3.86□□□□□ -1.79
VIM-210ENST00000637053 CCDC144BQ3MJ40 725 aa3.86□□□□□ -1.79
VIM-210ENST00000637053 CDCA8Q53HL2 280 aa3.86□□□□□ -1.79
VIM-210ENST00000637053 ZNF280DQ6N043 979 aa3.86□□□□□ -1.79
VIM-210ENST00000637053 CAPN12Q6ZSI9 719 aa3.86□□□□□ -1.79
VIM-210ENST00000637053 PLD6Q8N2A8 252 aaKnown RBP3.86□□□□□ -1.79
VIM-210ENST00000637053 NLGN1Q8N2Q7 840 aa3.86□□□□□ -1.79
VIM-210ENST00000637053 NRSN2Q9GZP1 204 aa3.86□□□□□ -1.79
VIM-210ENST00000637053 ELP3Q9H9T3 547 aa3.86□□□□□ -1.79
VIM-210ENST00000637053 CRIM1Q9NZV1 1036 aa3.86□□□□□ -1.79
VIM-210ENST00000637053 FBXO9Q9UK97 447 aaPredicted RBP3.86□□□□□ -1.79
VIM-210ENST00000637053 CFAP69A5D8W1 941 aa3.85□□□□□ -1.79
VIM-210ENST00000637053 STK10O94804 968 aaKnown RBP3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 81.6 ms