RNA–Protein interactions for RNA: ENST00000627000.1

CHRNA4-209, Transcript of cholinergic receptor nicotinic alpha 4 subunit, humanhuman

TSL 1 (best)

Gene CHRNA4, Length 2,192 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4-209ENST00000627000 MYH2Q9UKX2 1941 aa22.94■■□□□ 1.26
CHRNA4-209ENST00000627000 ECM29Q5VYK3 1845 aa22.94■■□□□ 1.26
CHRNA4-209ENST00000627000 NTRK3Q16288 839 aa22.94■■□□□ 1.26
CHRNA4-209ENST00000627000 CTR9Q6PD62 1173 aa22.94■■□□□ 1.26
CHRNA4-209ENST00000627000 GOLGA6L4A6NEF3 574 aa22.93■■□□□ 1.26
CHRNA4-209ENST00000627000 WTAPQ15007 396 aa22.93■■□□□ 1.26
CHRNA4-209ENST00000627000 GRIK5Q16478 980 aa22.93■■□□□ 1.26
CHRNA4-209ENST00000627000 USP17L12C9JPN9 530 aa22.93■■□□□ 1.26
CHRNA4-209ENST00000627000 USP17L21D6R901 530 aa22.93■■□□□ 1.26
CHRNA4-209ENST00000627000 RANBP6O60518 1105 aaKnown RBP22.93■■□□□ 1.26
CHRNA4-209ENST00000627000 UFL1O94874 794 aa22.93■■□□□ 1.26
CHRNA4-209ENST00000627000 APBA3O96018 575 aa22.93■■□□□ 1.26
CHRNA4-209ENST00000627000 ZNF772Q68DY9 489 aaPredicted RBP22.93■■□□□ 1.26
CHRNA4-209ENST00000627000 DZIP1Q86YF9 867 aaKnown RBP22.93■■□□□ 1.26
CHRNA4-209ENST00000627000 TAOK2Q9UL54 1235 aa22.93■■□□□ 1.26
CHRNA4-209ENST00000627000 DUOX1Q9NRD9 1551 aa22.93■■□□□ 1.26
CHRNA4-209ENST00000627000 COL23A1Q86Y22 540 aaPredicted RBP22.92■■□□□ 1.26
CHRNA4-209ENST00000627000 UBE2Q2LH0YL09 131 aa22.91■■□□□ 1.26
CHRNA4-209ENST00000627000 ZBTB22O15209 634 aa22.91■■□□□ 1.26
CHRNA4-209ENST00000627000 PRDM1O75626 825 aa22.91■■□□□ 1.26
CHRNA4-209ENST00000627000 LETM1O95202 739 aaPredicted RBP22.91■■□□□ 1.26
CHRNA4-209ENST00000627000 ZNF804AQ7Z570 1209 aa22.91■■□□□ 1.26
CHRNA4-209ENST00000627000 DCP1AQ9NPI6 582 aaPredicted RBP22.91■■□□□ 1.26
CHRNA4-209ENST00000627000 CDKL5O76039 1030 aa22.91■■□□□ 1.26
CHRNA4-209ENST00000627000 HOXA10P31260 410 aaPredicted RBP22.91■■□□□ 1.26
CHRNA4-209ENST00000627000 SART3Q15020 963 aaKnown RBP22.91■■□□□ 1.26
CHRNA4-209ENST00000627000 AKT1S1Q96B36 256 aa22.91■■□□□ 1.26
CHRNA4-209ENST00000627000 ALG1Q9BT22 464 aa22.91■■□□□ 1.26
CHRNA4-209ENST00000627000 CRNKL1Q9BZJ0 848 aaKnown RBP22.91■■□□□ 1.26
CHRNA4-209ENST00000627000 RCOR1Q9UKL0 485 aa22.91■■□□□ 1.26
CHRNA4-209ENST00000627000 ANKRD31Q8N7Z5 1873 aa22.9■■□□□ 1.26
CHRNA4-209ENST00000627000 KIF28PB7ZC32 967 aa22.9■■□□□ 1.26
CHRNA4-209ENST00000627000 POLR3DP05423 398 aaPredicted RBP22.9■■□□□ 1.26
CHRNA4-209ENST00000627000 SPTY2D1Q68D10 685 aaPredicted RBP22.9■■□□□ 1.26
CHRNA4-209ENST00000627000 CPLX2Q6PUV4 134 aaKnown RBP22.9■■□□□ 1.26
CHRNA4-209ENST00000627000 C15orf52Q6ZUT6 534 aaKnown RBP22.9■■□□□ 1.26
CHRNA4-209ENST00000627000 WDR66Q8TBY9 1149 aa22.9■■□□□ 1.26
CHRNA4-209ENST00000627000 BICD2Q8TD16 824 aa22.9■■□□□ 1.26
CHRNA4-209ENST00000627000 ESR2Q92731 530 aa22.9■■□□□ 1.26
CHRNA4-209ENST00000627000 ZNF396Q96N95 335 aaPredicted RBP22.9■■□□□ 1.26
CHRNA4-209ENST00000627000 DACT1Q9NYF0 836 aa22.9■■□□□ 1.26
CHRNA4-209ENST00000627000 ERICH2A1L162 156 aa22.9■■□□□ 1.26
CHRNA4-209ENST00000627000 PLSCR1O15162 318 aa22.9■■□□□ 1.26
CHRNA4-209ENST00000627000 LDHBP07195 334 aaKnown RBP22.9■■□□□ 1.26
CHRNA4-209ENST00000627000 CCDC173Q0VFZ6 552 aa22.9■■□□□ 1.26
CHRNA4-209ENST00000627000 SYNE3Q6ZMZ3 975 aa22.9■■□□□ 1.26
CHRNA4-209ENST00000627000 GGA1Q9UJY5 639 aa22.9■■□□□ 1.26
CHRNA4-209ENST00000627000 BBOX1O75936 387 aa22.89■■□□□ 1.26
CHRNA4-209ENST00000627000 CYP2D6P10635 497 aa22.89■■□□□ 1.26
CHRNA4-209ENST00000627000 ATP2B4P23634 1241 aa22.89■■□□□ 1.26
CHRNA4-209ENST00000627000 IARSP41252 1262 aaKnown RBP22.89■■□□□ 1.26
CHRNA4-209ENST00000627000 CAMK4Q16566 473 aa22.89■■□□□ 1.26
CHRNA4-209ENST00000627000 PPP1R9BQ96SB3 815 aa22.89■■□□□ 1.26
CHRNA4-209ENST00000627000 UBAC1Q9BSL1 405 aa22.89■■□□□ 1.26
CHRNA4-209ENST00000627000 FUCA2Q9BTY2 467 aa22.89■■□□□ 1.26
CHRNA4-209ENST00000627000 TNKSO95271 1327 aa22.89■■□□□ 1.25
CHRNA4-209ENST00000627000 KIAA1551Q9HCM1 1747 aa22.89■■□□□ 1.25
CHRNA4-209ENST00000627000 KLRG2A4D1S0 409 aaPredicted RBP22.89■■□□□ 1.25
CHRNA4-209ENST00000627000 SEC23AQ15436 765 aa22.89■■□□□ 1.25
CHRNA4-209ENST00000627000 DIXDC1Q155Q3 683 aa22.89■■□□□ 1.25
CHRNA4-209ENST00000627000 ANP32BQ92688 251 aaKnown RBP22.89■■□□□ 1.25
CHRNA4-209ENST00000627000 MTA3Q9BTC8 594 aa22.89■■□□□ 1.25
CHRNA4-209ENST00000627000 CD209Q9NNX6 404 aa22.89■■□□□ 1.25
CHRNA4-209ENST00000627000 POLLQ9UGP5 575 aa22.89■■□□□ 1.25
CHRNA4-209ENST00000627000 LAMB1P07942 1786 aa22.88■■□□□ 1.25
CHRNA4-209ENST00000627000 NR1I2O75469 434 aa22.88■■□□□ 1.25
CHRNA4-209ENST00000627000 CRAMP1Q96RY5 1269 aa22.88■■□□□ 1.25
CHRNA4-209ENST00000627000 SLC26A6Q9BXS9 759 aa22.88■■□□□ 1.25
CHRNA4-209ENST00000627000 NID2Q14112 1375 aa22.88■■□□□ 1.25
CHRNA4-209ENST00000627000 KIF23Q02241 960 aaPredicted RBP22.87■■□□□ 1.25
CHRNA4-209ENST00000627000 ATL3Q6DD88 541 aa22.87■■□□□ 1.25
CHRNA4-209ENST00000627000 ZNF654Q8IZM8 581 aa22.87■■□□□ 1.25
CHRNA4-209ENST00000627000 NUP62CLQ9H1M0 184 aa22.87■■□□□ 1.25
CHRNA4-209ENST00000627000 FGRP09769 529 aa22.87■■□□□ 1.25
CHRNA4-209ENST00000627000 RTN1Q16799 776 aa22.87■■□□□ 1.25
CHRNA4-209ENST00000627000 SLC4A8Q2Y0W8 1093 aa22.87■■□□□ 1.25
CHRNA4-209ENST00000627000 KRT40Q6A162 431 aa22.87■■□□□ 1.25
CHRNA4-209ENST00000627000 TBC1D16Q8TBP0 767 aa22.87■■□□□ 1.25
CHRNA4-209ENST00000627000 NUP133Q8WUM0 1156 aa22.87■■□□□ 1.25
CHRNA4-209ENST00000627000 ATP8A2Q9NTI2 1148 aa22.87■■□□□ 1.25
CHRNA4-209ENST00000627000 CMTR1Q8N1G2 835 aaKnown RBP22.86■■□□□ 1.25
CHRNA4-209ENST00000627000 TMTC2Q8N394 836 aa22.86■■□□□ 1.25
CHRNA4-209ENST00000627000 ENAHQ8N8S7 591 aaPredicted RBP22.86■■□□□ 1.25
CHRNA4-209ENST00000627000 ZSCAN10Q96SZ4 725 aaPredicted RBP22.86■■□□□ 1.25
CHRNA4-209ENST00000627000 DDX52Q9Y2R4 599 aaKnown RBP eCLIP22.86■■□□□ 1.25
CHRNA4-209ENST00000627000 CLIC4Q9Y696 253 aa22.86■■□□□ 1.25
CHRNA4-209ENST00000627000 FMNL1O95466 1100 aaPredicted RBP22.85■■□□□ 1.25
CHRNA4-209ENST00000627000 IFNAR1P17181 557 aa22.85■■□□□ 1.25
CHRNA4-209ENST00000627000 GUCY1A2P33402 732 aa22.85■■□□□ 1.25
CHRNA4-209ENST00000627000 SSRP1Q08945 709 aaKnown RBP22.85■■□□□ 1.25
CHRNA4-209ENST00000627000 MYSM1Q5VVJ2 828 aa22.85■■□□□ 1.25
CHRNA4-209ENST00000627000 CCDC82Q8N4S0 544 aa22.85■■□□□ 1.25
CHRNA4-209ENST00000627000 PODXL2Q9NZ53 605 aa22.85■■□□□ 1.25
CHRNA4-209ENST00000627000 USP17L8P0C7I0 530 aa22.84■■□□□ 1.25
CHRNA4-209ENST00000627000 NLGN1Q8N2Q7 840 aa22.84■■□□□ 1.25
CHRNA4-209ENST00000627000 FAM43AQ8N2R8 423 aa22.84■■□□□ 1.25
CHRNA4-209ENST00000627000 SH3RF3Q8TEJ3 882 aaPredicted RBP22.84■■□□□ 1.25
CHRNA4-209ENST00000627000 RTEL1Q9NZ71 1219 aa22.84■■□□□ 1.25
CHRNA4-209ENST00000627000 LRRC37AA6NMS7 1700 aa22.84■■□□□ 1.25
CHRNA4-209ENST00000627000 PPEF1O14829 653 aaPredicted RBP22.84■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms