RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 MYSM1Q5VVJ2 828 aa12.37□□□□□ -0.43
CUX1-221ENST00000622516 FAM200AQ8TCP9 573 aa12.37□□□□□ -0.43
CUX1-221ENST00000622516 hCG_1642624A0A1W2PR95 340 aa12.36□□□□□ -0.43
CUX1-221ENST00000622516 PRDX5P30044 214 aa12.36□□□□□ -0.43
CUX1-221ENST00000622516 GNL2Q13823 731 aaKnown RBP12.36□□□□□ -0.43
CUX1-221ENST00000622516 NTRK3Q16288 839 aa12.36□□□□□ -0.43
CUX1-221ENST00000622516 KRT40Q6A162 431 aa12.36□□□□□ -0.43
CUX1-221ENST00000622516 SYNE3Q6ZMZ3 975 aa12.36□□□□□ -0.43
CUX1-221ENST00000622516 CCDC73Q6ZRK6 1079 aa12.36□□□□□ -0.43
CUX1-221ENST00000622516 LINC00301Q8NCQ3 95 aa12.36□□□□□ -0.43
CUX1-221ENST00000622516 TMEM87BQ96K49 555 aa12.36□□□□□ -0.43
CUX1-221ENST00000622516 AATFQ9NY61 560 aaKnown RBP eCLIP12.36□□□□□ -0.431e-6■■■■■ 27.8
CUX1-221ENST00000622516 ZNF804BA4D1E1 1349 aa12.36□□□□□ -0.43
CUX1-221ENST00000622516 COL5A3P25940 1745 aaPredicted RBP12.36□□□□□ -0.43
CUX1-221ENST00000622516 BAZ2BQ9UIF8 2168 aaKnown RBP12.36□□□□□ -0.43
CUX1-221ENST00000622516 NDUFA8P51970 172 aa12.36□□□□□ -0.43
CUX1-221ENST00000622516 HS1BP3Q53T59 392 aa12.36□□□□□ -0.43
CUX1-221ENST00000622516 ZNF165P49910 485 aa12.36□□□□□ -0.43
CUX1-221ENST00000622516 WTAPQ15007 396 aa12.36□□□□□ -0.43
CUX1-221ENST00000622516 SLC10A5Q5PT55 438 aa12.36□□□□□ -0.43
CUX1-221ENST00000622516 RIOK1Q9BRS2 568 aaKnown RBP12.36□□□□□ -0.43
CUX1-221ENST00000622516 LRRC4BQ9NT99 713 aa12.36□□□□□ -0.43
CUX1-221ENST00000622516 KCNJ14Q9UNX9 436 aa12.36□□□□□ -0.43
CUX1-221ENST00000622516 WDR19Q8NEZ3 1342 aa12.36□□□□□ -0.43
CUX1-221ENST00000622516 KINO60870 393 aaKnown RBP12.35□□□□□ -0.43
CUX1-221ENST00000622516 C11orf57Q6ZUT1 292 aaPredicted RBP12.35□□□□□ -0.43
CUX1-221ENST00000622516 RTEL1Q9NZ71 1219 aa12.35□□□□□ -0.43
CUX1-221ENST00000622516 PNPLA7Q6ZV29 1317 aa12.35□□□□□ -0.43
CUX1-221ENST00000622516 RREB1Q92766 1687 aa12.35□□□□□ -0.43
CUX1-221ENST00000622516 SPTLC2O15270 562 aa12.35□□□□□ -0.43
CUX1-221ENST00000622516 GNAT2P19087 354 aa12.35□□□□□ -0.43
CUX1-221ENST00000622516 MECOMQ03112 1051 aa12.35□□□□□ -0.43
CUX1-221ENST00000622516 NFIXQ14938 502 aa12.35□□□□□ -0.43
CUX1-221ENST00000622516 TRAPPC3LQ5T215 181 aa12.35□□□□□ -0.43
CUX1-221ENST00000622516 ENGASEQ8NFI3 743 aa12.35□□□□□ -0.43
CUX1-221ENST00000622516 STAG1Q8WVM7 1258 aa12.35□□□□□ -0.43
CUX1-221ENST00000622516 GJD4Q96KN9 370 aaPredicted RBP12.35□□□□□ -0.43
CUX1-221ENST00000622516 KRT23Q9C075 422 aa12.35□□□□□ -0.43
CUX1-221ENST00000622516 NYXQ9GZU5 481 aa12.35□□□□□ -0.43
CUX1-221ENST00000622516 ANKIB1Q9P2G1 1089 aa12.35□□□□□ -0.43
CUX1-221ENST00000622516 ARAP2Q8WZ64 1704 aa12.34□□□□□ -0.43
CUX1-221ENST00000622516 TM4SF1P30408 202 aa12.34□□□□□ -0.43
CUX1-221ENST00000622516 HIBADHP31937 336 aaKnown RBP12.34□□□□□ -0.43
CUX1-221ENST00000622516 CPLX2Q6PUV4 134 aaKnown RBP12.34□□□□□ -0.43
CUX1-221ENST00000622516 RBM43Q6ZSC3 357 aaKnown RBP12.34□□□□□ -0.43
CUX1-221ENST00000622516 SGMS1Q86VZ5 419 aa12.34□□□□□ -0.43
CUX1-221ENST00000622516 SDF4Q9BRK5 362 aa12.34□□□□□ -0.43
CUX1-221ENST00000622516 CNNM2Q9H8M5 875 aa12.34□□□□□ -0.43
CUX1-221ENST00000622516 BAZ2AQ9UIF9 1905 aaKnown RBP12.34□□□□□ -0.43
CUX1-221ENST00000622516 WDHD1O75717 1129 aaPredicted RBP12.34□□□□□ -0.43
CUX1-221ENST00000622516 LIFRP42702 1097 aa12.34□□□□□ -0.43
CUX1-221ENST00000622516 FAM160A1Q05DH4 1040 aa12.34□□□□□ -0.43
CUX1-221ENST00000622516 ISM2Q6H9L7 571 aa12.34□□□□□ -0.43
CUX1-221ENST00000622516 FBXO33Q7Z6M2 555 aa12.34□□□□□ -0.43
CUX1-221ENST00000622516 UBAC1Q9BSL1 405 aa12.34□□□□□ -0.43
CUX1-221ENST00000622516 ERICH2A1L162 156 aa12.33□□□□□ -0.43
CUX1-221ENST00000622516 USP17L12C9JPN9 530 aa12.33□□□□□ -0.43
CUX1-221ENST00000622516 USP17L21D6R901 530 aa12.33□□□□□ -0.43
CUX1-221ENST00000622516 NMT2O60551 498 aa12.33□□□□□ -0.43
CUX1-221ENST00000622516 CDKL5O76039 1030 aa12.33□□□□□ -0.43
CUX1-221ENST00000622516 ATP2B1P20020 1258 aa12.33□□□□□ -0.43
CUX1-221ENST00000622516 RC3H1Q5TC82 1133 aaKnown RBP12.33□□□□□ -0.43
CUX1-221ENST00000622516 ANO1Q5XXA6 986 aa12.33□□□□□ -0.43
CUX1-221ENST00000622516 NSUN4Q96CB9 384 aaKnown RBP12.33□□□□□ -0.43
CUX1-221ENST00000622516 BTAF1O14981 1849 aa12.33□□□□□ -0.44
CUX1-221ENST00000622516 DOCK2Q92608 1830 aa12.33□□□□□ -0.44
CUX1-221ENST00000622516 BTBD18B2RXH4 712 aa12.33□□□□□ -0.44
CUX1-221ENST00000622516 BIN1O00499 593 aa12.33□□□□□ -0.44
CUX1-221ENST00000622516 CYP2D6P10635 497 aa12.33□□□□□ -0.44
CUX1-221ENST00000622516 SSRP1Q08945 709 aaKnown RBP12.33□□□□□ -0.44
CUX1-221ENST00000622516 ADALQ6DHV7 355 aa12.33□□□□□ -0.44
CUX1-221ENST00000622516 SEPT12Q8IYM1 358 aa12.33□□□□□ -0.44
CUX1-221ENST00000622516 MRPS27Q92552 414 aaKnown RBP12.33□□□□□ -0.44
CUX1-221ENST00000622516 CLIC6Q96NY7 704 aa12.33□□□□□ -0.44
CUX1-221ENST00000622516 MYH15Q9Y2K3 1946 aa12.33□□□□□ -0.44
CUX1-221ENST00000622516 TNKSO95271 1327 aa12.33□□□□□ -0.44
CUX1-221ENST00000622516 SART3Q15020 963 aaKnown RBP12.33□□□□□ -0.44
CUX1-221ENST00000622516 RTN1Q16799 776 aa12.33□□□□□ -0.44
CUX1-221ENST00000622516 SPECC1Q5M775 1068 aa12.33□□□□□ -0.44
CUX1-221ENST00000622516 PIBF1Q8WXW3 757 aa12.33□□□□□ -0.44
CUX1-221ENST00000622516 BCORQ6W2J9 1755 aa12.32□□□□□ -0.44
CUX1-221ENST00000622516 AFF2P51816 1311 aa12.32□□□□□ -0.44
CUX1-221ENST00000622516 MYH2Q9UKX2 1941 aa12.32□□□□□ -0.44
CUX1-221ENST00000622516 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.32□□□□□ -0.44
CUX1-221ENST00000622516 TRIM29Q14134 588 aa12.32□□□□□ -0.44
CUX1-221ENST00000622516 FAM47AQ5JRC9 791 aa12.32□□□□□ -0.44
CUX1-221ENST00000622516 ZNF654Q8IZM8 581 aa12.32□□□□□ -0.44
CUX1-221ENST00000622516 FMR1NBQ8N0W7 255 aaPredicted RBP12.32□□□□□ -0.44
CUX1-221ENST00000622516 TRIM5Q9C035 493 aa12.32□□□□□ -0.44
CUX1-221ENST00000622516 POLR3EQ9NVU0 708 aa12.32□□□□□ -0.44
CUX1-221ENST00000622516 NRBP1Q9UHY1 535 aa12.32□□□□□ -0.44
CUX1-221ENST00000622516 CICQ96RK0 1608 aaPredicted RBP12.32□□□□□ -0.44
CUX1-221ENST00000622516 CHD4Q14839 1912 aa12.32□□□□□ -0.44
CUX1-221ENST00000622516 GRIK5Q16478 980 aa12.32□□□□□ -0.44
CUX1-221ENST00000622516 CTR9Q6PD62 1173 aa12.32□□□□□ -0.44
CUX1-221ENST00000622516 BRAPQ7Z569 592 aa12.32□□□□□ -0.44
CUX1-221ENST00000622516 R3HCC1Q9Y3T6 440 aaKnown RBP12.32□□□□□ -0.44
CUX1-221ENST00000622516 C4AP0C0L4 1744 aa12.32□□□□□ -0.44
CUX1-221ENST00000622516 C4BP0C0L5 1744 aa12.32□□□□□ -0.44
CUX1-221ENST00000622516 HSPA1LP34931 641 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 120.6 ms