RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 SLC5A4Q9NY91 659 aa12.8□□□□□ -0.36
CLIP1-219ENST00000620786 ABCA5Q8WWZ7 1642 aa12.8□□□□□ -0.36
CLIP1-219ENST00000620786 RLBP1P12271 317 aa12.8□□□□□ -0.36
CLIP1-219ENST00000620786 ARHGEF12Q9NZN5 1544 aa12.8□□□□□ -0.36
CLIP1-219ENST00000620786 TXKP42681 527 aa12.8□□□□□ -0.36
CLIP1-219ENST00000620786 GADL1Q6ZQY3 521 aa12.8□□□□□ -0.36
CLIP1-219ENST00000620786 TCP10L2B9ZVM9 353 aa12.8□□□□□ -0.36
CLIP1-219ENST00000620786 NDC80O14777 642 aa12.8□□□□□ -0.36
CLIP1-219ENST00000620786 DNM2P50570 870 aa12.8□□□□□ -0.36
CLIP1-219ENST00000620786 KLHL40Q2TBA0 621 aa12.8□□□□□ -0.36
CLIP1-219ENST00000620786 GOLGA1Q92805 767 aa12.8□□□□□ -0.36
CLIP1-219ENST00000620786 ZNF532Q9HCE3 1301 aa12.79□□□□□ -0.36
CLIP1-219ENST00000620786 CFBP00751 764 aa12.79□□□□□ -0.36
CLIP1-219ENST00000620786 RPS8P62241 208 aaKnown RBP12.79□□□□□ -0.36
CLIP1-219ENST00000620786 CTNND2Q9UQB3 1225 aa12.79□□□□□ -0.36
CLIP1-219ENST00000620786 MAPKBP1O60336 1514 aa12.79□□□□□ -0.36
CLIP1-219ENST00000620786 SLC27A2O14975 620 aa12.79□□□□□ -0.36
CLIP1-219ENST00000620786 CALUO43852 315 aaPredicted RBP12.79□□□□□ -0.36
CLIP1-219ENST00000620786 KRT83P78385 493 aa12.79□□□□□ -0.36
CLIP1-219ENST00000620786 DOK7Q18PE1 504 aa12.79□□□□□ -0.36
CLIP1-219ENST00000620786 MFSD14BQ5SR56 506 aa12.79□□□□□ -0.36
CLIP1-219ENST00000620786 RNF216Q9NWF9 866 aaPredicted RBP12.79□□□□□ -0.36
CLIP1-219ENST00000620786 STK24Q9Y6E0 443 aa12.79□□□□□ -0.36
CLIP1-219ENST00000620786 ZAP70P43403 619 aa12.79□□□□□ -0.36
CLIP1-219ENST00000620786 CEP63Q96MT8 703 aa12.79□□□□□ -0.36
CLIP1-219ENST00000620786 TRAF5O00463 557 aa12.79□□□□□ -0.36
CLIP1-219ENST00000620786 ATP2A1O14983 1001 aa12.79□□□□□ -0.36
CLIP1-219ENST00000620786 STX10O60499 249 aa12.79□□□□□ -0.36
CLIP1-219ENST00000620786 KIFAP3Q92845 792 aa12.79□□□□□ -0.36
CLIP1-219ENST00000620786 CCDC42Q96M95 316 aa12.79□□□□□ -0.36
CLIP1-219ENST00000620786 PAIP2Q9BPZ3 127 aaKnown RBP12.79□□□□□ -0.36
CLIP1-219ENST00000620786 SPC25Q9HBM1 224 aa12.79□□□□□ -0.36
CLIP1-219ENST00000620786 ATP6V0A2Q9Y487 856 aa12.78□□□□□ -0.36
CLIP1-219ENST00000620786 POLR3GO15318 223 aaPredicted RBP12.78□□□□□ -0.36
CLIP1-219ENST00000620786 CCDC63Q8NA47 563 aa12.78□□□□□ -0.36
CLIP1-219ENST00000620786 PPM1EQ8WY54 764 aa12.78□□□□□ -0.36
CLIP1-219ENST00000620786 PHKG2P15735 406 aa12.78□□□□□ -0.36
CLIP1-219ENST00000620786 SYT1P21579 422 aa12.78□□□□□ -0.36
CLIP1-219ENST00000620786 ATP2B4P23634 1241 aa12.78□□□□□ -0.36
CLIP1-219ENST00000620786 KRT9P35527 623 aa12.78□□□□□ -0.36
CLIP1-219ENST00000620786 MICALCLQ6ZW33 695 aa12.78□□□□□ -0.36
CLIP1-219ENST00000620786 ZMYND15Q9H091 742 aa12.78□□□□□ -0.36
CLIP1-219ENST00000620786 TRIM37O94972 964 aa12.78□□□□□ -0.36
CLIP1-219ENST00000620786 PDE4DQ08499 809 aa12.78□□□□□ -0.36
CLIP1-219ENST00000620786 UIMC1Q96RL1 719 aa12.78□□□□□ -0.36
CLIP1-219ENST00000620786 NEO1Q92859 1461 aa12.78□□□□□ -0.36
CLIP1-219ENST00000620786 CPA1P15085 419 aa12.77□□□□□ -0.36
CLIP1-219ENST00000620786 EIF4A1P60842 406 aaKnown RBP12.77□□□□□ -0.36
CLIP1-219ENST00000620786 KIF5AQ12840 1032 aa12.77□□□□□ -0.36
CLIP1-219ENST00000620786 ANGEL1Q9UNK9 670 aaKnown RBP12.77□□□□□ -0.36
CLIP1-219ENST00000620786 LTKP29376 864 aa12.77□□□□□ -0.36
CLIP1-219ENST00000620786 FAM200AQ8TCP9 573 aa12.77□□□□□ -0.36
CLIP1-219ENST00000620786 LZTS2Q9BRK4 669 aa12.77□□□□□ -0.36
CLIP1-219ENST00000620786 IBTKQ9P2D0 1353 aaPredicted RBP12.77□□□□□ -0.37
CLIP1-219ENST00000620786 SULF1Q8IWU6 871 aa12.77□□□□□ -0.37
CLIP1-219ENST00000620786 ELP1O95163 1332 aa12.77□□□□□ -0.37
CLIP1-219ENST00000620786 GAS8O95995 478 aa12.77□□□□□ -0.37
CLIP1-219ENST00000620786 CNGA1P29973 690 aa12.77□□□□□ -0.37
CLIP1-219ENST00000620786 SCNN1DP51172 638 aa12.77□□□□□ -0.37
CLIP1-219ENST00000620786 FAM47CQ5HY64 1035 aa12.77□□□□□ -0.37
CLIP1-219ENST00000620786 FAM47AQ5JRC9 791 aa12.77□□□□□ -0.37
CLIP1-219ENST00000620786 RAB3IL1Q8TBN0 382 aa12.77□□□□□ -0.37
CLIP1-219ENST00000620786 CCDC77Q9BR77 488 aa12.77□□□□□ -0.37
CLIP1-219ENST00000620786 NDUFB9Q9Y6M9 179 aa12.77□□□□□ -0.37
CLIP1-219ENST00000620786 CTAGE15A4D2H0 777 aa12.77□□□□□ -0.37
CLIP1-219ENST00000620786 CTAGE8P0CG41 777 aa12.77□□□□□ -0.37
CLIP1-219ENST00000620786 RILPL1Q5EBL4 403 aa12.77□□□□□ -0.37
CLIP1-219ENST00000620786 DCAF15Q66K64 600 aa12.77□□□□□ -0.37
CLIP1-219ENST00000620786 CNNM4Q6P4Q7 775 aa12.77□□□□□ -0.37
CLIP1-219ENST00000620786 CTAGE6Q86UF2 777 aa12.77□□□□□ -0.37
CLIP1-219ENST00000620786 CTAGE4Q8IX94 777 aa12.77□□□□□ -0.37
CLIP1-219ENST00000620786 CHL1O00533 1208 aa12.76□□□□□ -0.37
CLIP1-219ENST00000620786 ZBTB7BO15156 539 aaPredicted RBP12.76□□□□□ -0.37
CLIP1-219ENST00000620786 NONOQ15233 471 aaKnown RBP eCLIP12.76□□□□□ -0.37
CLIP1-219ENST00000620786 CNKSR1Q969H4 720 aa12.76□□□□□ -0.37
CLIP1-219ENST00000620786 CCDC114Q96M63 670 aa12.76□□□□□ -0.37
CLIP1-219ENST00000620786 NACA2Q9H009 215 aa12.76□□□□□ -0.37
CLIP1-219ENST00000620786 ARPP21Q9UBL0 812 aaPredicted RBP12.76□□□□□ -0.37
CLIP1-219ENST00000620786 TMEM94Q12767 1356 aa12.76□□□□□ -0.37
CLIP1-219ENST00000620786 PLXNC1O60486 1568 aa12.76□□□□□ -0.37
CLIP1-219ENST00000620786 KRT86O43790 486 aa12.76□□□□□ -0.37
CLIP1-219ENST00000620786 USPL1Q5W0Q7 1092 aa12.76□□□□□ -0.37
CLIP1-219ENST00000620786 SPECC1LQ69YQ0 1117 aa12.76□□□□□ -0.37
CLIP1-219ENST00000620786 KRT25Q7Z3Z0 450 aa12.76□□□□□ -0.37
CLIP1-219ENST00000620786 FMNL3Q8IVF7 1028 aa12.76□□□□□ -0.37
CLIP1-219ENST00000620786 FAM227BQ96M60 508 aa12.76□□□□□ -0.37
CLIP1-219ENST00000620786 TFAP4Q01664 338 aa12.76□□□□□ -0.37
CLIP1-219ENST00000620786 MYL10Q9BUA6 226 aa12.76□□□□□ -0.37
CLIP1-219ENST00000620786 AGTPBP1Q9UPW5 1226 aa12.76□□□□□ -0.37
CLIP1-219ENST00000620786 SKILP12757 684 aa12.76□□□□□ -0.37
CLIP1-219ENST00000620786 FAM169AQ9Y6X4 670 aa12.76□□□□□ -0.37
CLIP1-219ENST00000620786 DISP1Q96F81 1524 aa12.76□□□□□ -0.37
CLIP1-219ENST00000620786 NEURL1BA8MQ27 555 aa12.75□□□□□ -0.37
CLIP1-219ENST00000620786 CCDC14Q49A88 953 aa12.75□□□□□ -0.37
CLIP1-219ENST00000620786 ARHGEF16Q5VV41 709 aa12.75□□□□□ -0.37
CLIP1-219ENST00000620786 TXNDC16Q9P2K2 825 aa12.75□□□□□ -0.37
CLIP1-219ENST00000620786 TTC38Q5R3I4 469 aa12.75□□□□□ -0.37
CLIP1-219ENST00000620786 NLRX1Q86UT6 975 aa12.75□□□□□ -0.37
CLIP1-219ENST00000620786 NOC4LQ9BVI4 516 aaKnown RBP12.75□□□□□ -0.37
CLIP1-219ENST00000620786 PPEF1O14829 653 aaPredicted RBP12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms