RNA–Protein interactions for RNA: ENST00000620675.4

NEK3-210, Transcript of NIMA related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene NEK3, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-210ENST00000620675 FLT1P17948 1338 aa16.4■□□□□ 0.22
NEK3-210ENST00000620675 LRRFIP1Q32MZ4 808 aaKnown RBP16.39■□□□□ 0.21
NEK3-210ENST00000620675 CHADLQ6NUI6 762 aa16.39■□□□□ 0.21
NEK3-210ENST00000620675 TEPSINQ96N21 525 aa16.39■□□□□ 0.21
NEK3-210ENST00000620675 EPB41L4AQ9HCS5 686 aaPredicted RBP16.39■□□□□ 0.21
NEK3-210ENST00000620675 MKRN1Q9UHC7 482 aaKnown RBP16.39■□□□□ 0.21
NEK3-210ENST00000620675 SAP30BPQ9UHR5 308 aaKnown RBP16.39■□□□□ 0.21
NEK3-210ENST00000620675 SLC4A4Q9Y6R1 1079 aa16.39■□□□□ 0.21
NEK3-210ENST00000620675 PITPNM2Q9BZ72 1349 aa16.39■□□□□ 0.21
NEK3-210ENST00000620675 DDTLA6NHG4 134 aaPredicted RBP16.39■□□□□ 0.21
NEK3-210ENST00000620675 GSG1L2A8MUP6 293 aa16.39■□□□□ 0.21
NEK3-210ENST00000620675 ITGBL1O95965 494 aaPredicted RBP16.39■□□□□ 0.21
NEK3-210ENST00000620675 TMED8Q6PL24 325 aaPredicted RBP16.39■□□□□ 0.21
NEK3-210ENST00000620675 SSC5DA1L4H1 1573 aa16.39■□□□□ 0.21
NEK3-210ENST00000620675 DCP1AQ9NPI6 582 aaPredicted RBP16.38■□□□□ 0.21
NEK3-210ENST00000620675 TMOD2Q9NZR1 351 aa16.38■□□□□ 0.21
NEK3-210ENST00000620675 LAMB1P07942 1786 aa16.38■□□□□ 0.21
NEK3-210ENST00000620675 CCDC171Q6TFL3 1326 aa16.38■□□□□ 0.21
NEK3-210ENST00000620675 CYP2D7A0A087X1C5 515 aa16.38■□□□□ 0.21
NEK3-210ENST00000620675 PLCG2P16885 1265 aa16.38■□□□□ 0.21
NEK3-210ENST00000620675 USP5P45974 858 aa16.38■□□□□ 0.21
NEK3-210ENST00000620675 NBPF12Q5TAG4 269 aaPredicted RBP16.38■□□□□ 0.21
NEK3-210ENST00000620675 APOBEC3FQ8IUX4 373 aaKnown RBP16.38■□□□□ 0.21
NEK3-210ENST00000620675 SULF1Q8IWU6 871 aa16.38■□□□□ 0.21
NEK3-210ENST00000620675 CRNKL1Q9BZJ0 848 aaKnown RBP16.38■□□□□ 0.21
NEK3-210ENST00000620675 OSBPL5Q9H0X9 879 aaPredicted RBP16.38■□□□□ 0.21
NEK3-210ENST00000620675 PALD1Q9ULE6 856 aa16.38■□□□□ 0.21
NEK3-210ENST00000620675 MYH8P13535 1937 aa16.37■□□□□ 0.21
NEK3-210ENST00000620675 SGSM2O43147 1006 aa16.37■□□□□ 0.21
NEK3-210ENST00000620675 CDC45O75419 566 aa16.37■□□□□ 0.21
NEK3-210ENST00000620675 TOMM70O94826 608 aa16.37■□□□□ 0.21
NEK3-210ENST00000620675 CYP2D6P10635 497 aa16.37■□□□□ 0.21
NEK3-210ENST00000620675 FKBP1CQ5VVH2 108 aa16.37■□□□□ 0.21
NEK3-210ENST00000620675 HIP1O00291 1037 aa16.36■□□□□ 0.21
NEK3-210ENST00000620675 CDC37L1Q7L3B6 337 aa16.36■□□□□ 0.21
NEK3-210ENST00000620675 FAM151AQ8WW52 585 aa16.36■□□□□ 0.21
NEK3-210ENST00000620675 ESYT1Q9BSJ8 1104 aa16.36■□□□□ 0.21
NEK3-210ENST00000620675 HSPD1P10809 573 aaKnown RBP16.36■□□□□ 0.21
NEK3-210ENST00000620675 PTH1RQ03431 593 aa16.36■□□□□ 0.21
NEK3-210ENST00000620675 FAM83AQ86UY5 434 aa16.36■□□□□ 0.21
NEK3-210ENST00000620675 TICAM2Q86XR7 235 aa16.36■□□□□ 0.21
NEK3-210ENST00000620675 CDCA5Q96FF9 252 aa16.36■□□□□ 0.21
NEK3-210ENST00000620675 OTOFQ9HC10 1997 aa16.35■□□□□ 0.21
NEK3-210ENST00000620675 FAM196BA6NMK8 535 aa16.35■□□□□ 0.21
NEK3-210ENST00000620675 PLCD1P51178 756 aa16.35■□□□□ 0.21
NEK3-210ENST00000620675 ENTPD3O75355 529 aa16.34■□□□□ 0.21
NEK3-210ENST00000620675 APPP05067 770 aa16.34■□□□□ 0.21
NEK3-210ENST00000620675 TNFAIP1Q13829 316 aa16.34■□□□□ 0.21
NEK3-210ENST00000620675 ZSCAN29Q8IWY8 852 aaPredicted RBP16.34■□□□□ 0.21
NEK3-210ENST00000620675 IFNL3Q8IZI9 196 aa16.34■□□□□ 0.21
NEK3-210ENST00000620675 RBM46Q8TBY0 533 aaKnown RBP16.34■□□□□ 0.21
NEK3-210ENST00000620675 MCM9Q9NXL9 1143 aa16.34■□□□□ 0.21
NEK3-210ENST00000620675 PATL2C9JE40 543 aaKnown RBP16.34■□□□□ 0.21
NEK3-210ENST00000620675 PRKG1Q13976 671 aa16.34■□□□□ 0.21
NEK3-210ENST00000620675 MOB2Q70IA6 237 aa16.34■□□□□ 0.21
NEK3-210ENST00000620675 MIGA2Q7L4E1 593 aa16.34■□□□□ 0.21
NEK3-210ENST00000620675 ZNF408Q9H9D4 720 aa16.34■□□□□ 0.21
NEK3-210ENST00000620675 LAMA4Q16363 1823 aa16.34■□□□□ 0.21
NEK3-210ENST00000620675 ATRNL1Q5VV63 1379 aa16.34■□□□□ 0.21
NEK3-210ENST00000620675 USP17L12C9JPN9 530 aa16.33■□□□□ 0.21
NEK3-210ENST00000620675 USP17L21D6R901 530 aa16.33■□□□□ 0.21
NEK3-210ENST00000620675 TNNI2P48788 182 aa16.33■□□□□ 0.21
NEK3-210ENST00000620675 CTR9Q6PD62 1173 aa16.33■□□□□ 0.21
NEK3-210ENST00000620675 SMC1BQ8NDV3 1235 aa16.33■□□□□ 0.21
NEK3-210ENST00000620675 RPAP1Q9BWH6 1393 aaPredicted RBP16.33■□□□□ 0.2
NEK3-210ENST00000620675 NPM3O75607 178 aaKnown RBP16.33■□□□□ 0.2
NEK3-210ENST00000620675 CST9Q5W186 159 aa16.33■□□□□ 0.2
NEK3-210ENST00000620675 CERS3Q8IU89 383 aa16.33■□□□□ 0.2
NEK3-210ENST00000620675 STK11IPQ8N1F8 1099 aa16.33■□□□□ 0.2
NEK3-210ENST00000620675 CSRNP1Q96S65 589 aa16.33■□□□□ 0.2
NEK3-210ENST00000620675 ATP8A2Q9NTI2 1148 aa16.33■□□□□ 0.2
NEK3-210ENST00000620675 PASKQ96RG2 1323 aa16.33■□□□□ 0.2
NEK3-210ENST00000620675 PAPPA2Q9BXP8 1791 aa16.32■□□□□ 0.2
NEK3-210ENST00000620675 ATAD5Q96QE3 1844 aa16.32■□□□□ 0.2
NEK3-210ENST00000620675 FGAP02671 866 aa16.32■□□□□ 0.2
NEK3-210ENST00000620675 DNAJC18Q9H819 358 aa16.32■□□□□ 0.2
NEK3-210ENST00000620675 RAD50Q92878 1312 aa16.32■□□□□ 0.2
NEK3-210ENST00000620675 SEC24BO95487 1268 aa16.31■□□□□ 0.2
NEK3-210ENST00000620675 GNAT2P19087 354 aa16.31■□□□□ 0.2
NEK3-210ENST00000620675 C8orf34Q49A92 452 aa16.31■□□□□ 0.2
NEK3-210ENST00000620675 RUFY2Q8WXA3 655 aa16.31■□□□□ 0.2
NEK3-210ENST00000620675 DYNLL2Q96FJ2 89 aa16.31■□□□□ 0.2
NEK3-210ENST00000620675 LSG1Q9H089 658 aaKnown RBP16.31■□□□□ 0.2
NEK3-210ENST00000620675 TACC3Q9Y6A5 838 aa16.31■□□□□ 0.2
NEK3-210ENST00000620675 TDO2P48775 406 aa16.31■□□□□ 0.2
NEK3-210ENST00000620675 SLC44A5Q8NCS7 719 aa16.31■□□□□ 0.2
NEK3-210ENST00000620675 INCENPQ9NQS7 918 aa16.31■□□□□ 0.2
NEK3-210ENST00000620675 COL2A1P02458 1487 aaPredicted RBP16.31■□□□□ 0.2
NEK3-210ENST00000620675 MINDY4BA8MYZ0 360 aa16.3■□□□□ 0.2
NEK3-210ENST00000620675 CELF2O95319 508 aaKnown RBP16.3■□□□□ 0.2
NEK3-210ENST00000620675 RRP1BQ14684 758 aaKnown RBP16.3■□□□□ 0.2
NEK3-210ENST00000620675 SHROOM1Q2M3G4 852 aaPredicted RBP16.3■□□□□ 0.2
NEK3-210ENST00000620675 POTEDQ86YR6 584 aa16.3■□□□□ 0.2
NEK3-210ENST00000620675 PPP2R3BQ9Y5P8 575 aa16.3■□□□□ 0.2
NEK3-210ENST00000620675 TAF6LQ9Y6J9 622 aa16.3■□□□□ 0.2
NEK3-210ENST00000620675 POLR3DP05423 398 aaPredicted RBP16.3■□□□□ 0.2
NEK3-210ENST00000620675 HAND2P61296 217 aa16.3■□□□□ 0.2
NEK3-210ENST00000620675 C12orf60Q5U649 245 aa16.3■□□□□ 0.2
NEK3-210ENST00000620675 NKX2-3Q8TAU0 364 aa16.3■□□□□ 0.2
NEK3-210ENST00000620675 NBPF3Q9H094 633 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms