RNA–Protein interactions for RNA: ENST00000616010.4

CCND3-223, Transcript of cyclin D3, human

TSL 5 BASIC

Gene CCND3, Length 2,047 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCND3-223	ENST00000616010	PDRG1	Q9NUG6	133 aa		27.8	■■■□□ 2.04
CCND3-223	ENST00000616010	MCM9	Q9NXL9	1143 aa		27.8	■■■□□ 2.04
CCND3-223	ENST00000616010	ARPP21	Q9UBL0	812 aa	Predicted RBP	27.8	■■■□□ 2.04
CCND3-223	ENST00000616010	TCEANC2	Q96MN5	208 aa		27.8	■■■□□ 2.04
CCND3-223	ENST00000616010	FLT1	P17948	1338 aa		27.8	■■■□□ 2.04
CCND3-223	ENST00000616010	CFAP100	Q494V2	611 aa		27.79	■■■□□ 2.04
CCND3-223	ENST00000616010	CDC42EP5	Q6NZY7	148 aa		27.79	■■■□□ 2.04
CCND3-223	ENST00000616010	OGFOD1	Q8N543	542 aa		27.79	■■■□□ 2.04
CCND3-223	ENST00000616010	USP40	Q9NVE5	1235 aa		27.79	■■■□□ 2.04
CCND3-223	ENST00000616010	HDAC9	Q9UKV0	1011 aa		27.79	■■■□□ 2.04
CCND3-223	ENST00000616010		K7ELQ4	463 aa	Predicted RBP	27.79	■■■□□ 2.04
CCND3-223	ENST00000616010	HMGB1	P09429	215 aa	Known RBP	27.79	■■■□□ 2.04
CCND3-223	ENST00000616010	SLC4A8	Q2Y0W8	1093 aa		27.79	■■■□□ 2.04
CCND3-223	ENST00000616010	NOL8	Q76FK4	1167 aa	Known RBP	27.79	■■■□□ 2.04
CCND3-223	ENST00000616010	AK2	P54819	239 aa		27.78	■■■□□ 2.04
CCND3-223	ENST00000616010	RALYL	Q86SE5	291 aa	Known RBP	27.78	■■■□□ 2.04
CCND3-223	ENST00000616010	STK11IP	Q8N1F8	1099 aa		27.78	■■■□□ 2.04
CCND3-223	ENST00000616010	IL27	Q8NEV9	243 aa		27.78	■■■□□ 2.04
CCND3-223	ENST00000616010	NEDD4	P46934	1319 aa		27.78	■■■□□ 2.04
CCND3-223	ENST00000616010	ZNF541	Q9H0D2	1346 aa		27.77	■■■□□ 2.04
CCND3-223	ENST00000616010	SMIM22	K7EJ46	135 aa		27.77	■■■□□ 2.04
CCND3-223	ENST00000616010	USP17L8	P0C7I0	530 aa		27.77	■■■□□ 2.04
CCND3-223	ENST00000616010	NCOA7	Q8NI08	942 aa		27.77	■■■□□ 2.04
CCND3-223	ENST00000616010	ANAPC4	Q9UJX5	808 aa		27.77	■■■□□ 2.04
CCND3-223	ENST00000616010	MYH1	P12882	1939 aa		27.77	■■■□□ 2.04
CCND3-223	ENST00000616010	TRDN	Q13061	729 aa		27.77	■■■□□ 2.04
CCND3-223	ENST00000616010	PICALM	Q13492	652 aa		27.77	■■■□□ 2.04
CCND3-223	ENST00000616010	AKNAD1	Q5T1N1	836 aa		27.77	■■■□□ 2.04
CCND3-223	ENST00000616010	WDHD1	O75717	1129 aa	Predicted RBP	27.76	■■■□□ 2.03
CCND3-223	ENST00000616010	CYP2D6	P10635	497 aa		27.76	■■■□□ 2.03
CCND3-223	ENST00000616010	EVX2	Q03828	476 aa		27.76	■■■□□ 2.03
CCND3-223	ENST00000616010	SBK1	Q52WX2	424 aa		27.76	■■■□□ 2.03
CCND3-223	ENST00000616010	STAG1	Q8WVM7	1258 aa		27.76	■■■□□ 2.03
CCND3-223	ENST00000616010	SAP30BP	Q9UHR5	308 aa	Known RBP	27.76	■■■□□ 2.03
CCND3-223	ENST00000616010	MFSD6	Q6ZSS7	791 aa		27.75	■■■□□ 2.03
CCND3-223	ENST00000616010	DHX32	Q7L7V1	743 aa	Known RBP	27.75	■■■□□ 2.03
CCND3-223	ENST00000616010	INCENP	Q9NQS7	918 aa		27.75	■■■□□ 2.03
CCND3-223	ENST00000616010	TACC3	Q9Y6A5	838 aa		27.75	■■■□□ 2.03
CCND3-223	ENST00000616010	GJA3	Q9Y6H8	435 aa		27.75	■■■□□ 2.03
CCND3-223	ENST00000616010	MCM2	P49736	904 aa		27.75	■■■□□ 2.03
CCND3-223	ENST00000616010	AMOTL1	Q8IY63	956 aa		27.75	■■■□□ 2.03
CCND3-223	ENST00000616010	MB21D2	Q8IYB1	491 aa	Predicted RBP	27.75	■■■□□ 2.03
CCND3-223	ENST00000616010	RNF41	Q9H4P4	317 aa	Predicted RBP	27.74	■■■□□ 2.03
CCND3-223	ENST00000616010	DDX4	Q9NQI0	724 aa	Known RBP	27.74	■■■□□ 2.03
CCND3-223	ENST00000616010	RPS12	P25398	132 aa	Known RBP	27.74	■■■□□ 2.03
CCND3-223	ENST00000616010	CHST3	Q7LGC8	479 aa		27.74	■■■□□ 2.03
CCND3-223	ENST00000616010		B4E1Z4	1266 aa		27.73	■■■□□ 2.03
CCND3-223	ENST00000616010	GPR162	Q16538	588 aa		27.73	■■■□□ 2.03
CCND3-223	ENST00000616010	PRMT6	Q96LA8	375 aa	Predicted RBP	27.73	■■■□□ 2.03
CCND3-223	ENST00000616010	LRRC2	Q9BYS8	371 aa		27.73	■■■□□ 2.03
CCND3-223	ENST00000616010	TOMM22	Q9NS69	142 aa		27.73	■■■□□ 2.03
CCND3-223	ENST00000616010	RNF181	Q9P0P0	153 aa		27.73	■■■□□ 2.03
CCND3-223	ENST00000616010	SPDYE2B	A6NHP3	402 aa		27.72	■■■□□ 2.03
CCND3-223	ENST00000616010	SPDYE6	P0CI01	402 aa		27.72	■■■□□ 2.03
CCND3-223	ENST00000616010	CACNB3	P54284	484 aa		27.72	■■■□□ 2.03
CCND3-223	ENST00000616010	NFIA	Q12857	509 aa		27.72	■■■□□ 2.03
CCND3-223	ENST00000616010	DLGAP5	Q15398	846 aa		27.72	■■■□□ 2.03
CCND3-223	ENST00000616010	C12orf60	Q5U649	245 aa		27.72	■■■□□ 2.03
CCND3-223	ENST00000616010	LARP6	Q9BRS8	491 aa	Known RBP	27.72	■■■□□ 2.03
CCND3-223	ENST00000616010	CNNM2	Q9H8M5	875 aa		27.72	■■■□□ 2.03
CCND3-223	ENST00000616010	SHTN1	A0MZ66	631 aa		27.72	■■■□□ 2.03
CCND3-223	ENST00000616010	POLR3D	P05423	398 aa	Predicted RBP	27.72	■■■□□ 2.03
CCND3-223	ENST00000616010	GMPS	P49915	693 aa	Predicted RBP	27.72	■■■□□ 2.03
CCND3-223	ENST00000616010	EXOSC10	Q01780	885 aa	Known RBP	27.72	■■■□□ 2.03
CCND3-223	ENST00000616010	RRP12	Q5JTH9	1297 aa	Known RBP	27.72	■■■□□ 2.03
CCND3-223	ENST00000616010	NKX2-3	Q8TAU0	364 aa		27.72	■■■□□ 2.03
CCND3-223	ENST00000616010	TDRD3	Q9H7E2	651 aa	Known RBP	27.72	■■■□□ 2.03
CCND3-223	ENST00000616010	MCM5	P33992	734 aa		27.71	■■■□□ 2.03
CCND3-223	ENST00000616010		Q6ZUG5	572 aa		27.71	■■■□□ 2.03
CCND3-223	ENST00000616010	KRT23	Q9C075	422 aa		27.71	■■■□□ 2.03
CCND3-223	ENST00000616010	TOB2	Q14106	344 aa	Predicted RBP	27.7	■■■□□ 2.03
CCND3-223	ENST00000616010	ROBO3	Q96MS0	1386 aa		27.7	■■■□□ 2.03
CCND3-223	ENST00000616010	PRC1	O43663	620 aa		27.7	■■■□□ 2.02
CCND3-223	ENST00000616010	SLC3A2	P08195	630 aa	Known RBP	27.7	■■■□□ 2.02
CCND3-223	ENST00000616010	FGD1	P98174	961 aa		27.7	■■■□□ 2.02
CCND3-223	ENST00000616010	SPRYD3	Q8NCJ5	442 aa		27.7	■■■□□ 2.02
CCND3-223	ENST00000616010	TMX3	Q96JJ7	454 aa		27.7	■■■□□ 2.02
CCND3-223	ENST00000616010	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	27.7	■■■□□ 2.02
CCND3-223	ENST00000616010	KDM4A	O75164	1064 aa		27.69	■■■□□ 2.02
CCND3-223	ENST00000616010	PLCD1	P51178	756 aa		27.69	■■■□□ 2.02
CCND3-223	ENST00000616010	ANTXR2	P58335	489 aa		27.69	■■■□□ 2.02
CCND3-223	ENST00000616010	ANKRD1	Q15327	319 aa		27.69	■■■□□ 2.02
CCND3-223	ENST00000616010	OSBPL5	Q9H0X9	879 aa	Predicted RBP	27.69	■■■□□ 2.02
CCND3-223	ENST00000616010	CYB5R4	Q7L1T6	521 aa		27.68	■■■□□ 2.02
CCND3-223	ENST00000616010	IDI2	Q9BXS1	227 aa		27.68	■■■□□ 2.02
CCND3-223	ENST00000616010	MYOZ2	Q9NPC6	264 aa		27.68	■■■□□ 2.02
CCND3-223	ENST00000616010	PRDM1	O75626	825 aa		27.68	■■■□□ 2.02
CCND3-223	ENST00000616010	PC	P11498	1178 aa	Known RBP	27.68	■■■□□ 2.02
CCND3-223	ENST00000616010	MICALL2	Q8IY33	904 aa		27.68	■■■□□ 2.02
CCND3-223	ENST00000616010	MTMR14	Q8NCE2	650 aa		27.68	■■■□□ 2.02
CCND3-223	ENST00000616010	DPF2	Q92785	391 aa		27.68	■■■□□ 2.02
CCND3-223	ENST00000616010	LIMCH1	Q9UPQ0	1083 aa		27.68	■■■□□ 2.02
CCND3-223	ENST00000616010	C9orf131	Q5VYM1	1079 aa		27.67	■■■□□ 2.02
CCND3-223	ENST00000616010	DYNLL2	Q96FJ2	89 aa		27.67	■■■□□ 2.02
CCND3-223	ENST00000616010	HSP90AA1	P07900	732 aa	Known RBP	27.67	■■■□□ 2.02
CCND3-223	ENST00000616010	FGR	P09769	529 aa		27.67	■■■□□ 2.02
CCND3-223	ENST00000616010	ZNF280A	P59817	542 aa	Predicted RBP	27.67	■■■□□ 2.02
CCND3-223	ENST00000616010	PDE4B	Q07343	736 aa		27.67	■■■□□ 2.02
CCND3-223	ENST00000616010	TCP10	Q12799	353 aa		27.67	■■■□□ 2.02
CCND3-223	ENST00000616010	BRF1	Q92994	677 aa		27.67	■■■□□ 2.02

Retrieved 100 of 20,778 RNA–protein pairs in 142.3 ms