RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 VIL1P09327 827 aaKnown RBP16.89■□□□□ 0.3
USP39-220ENST00000613444 HDLBPQ00341 1268 aaKnown RBP16.89■□□□□ 0.3
USP39-220ENST00000613444 APOBEC3HQ6NTF7 200 aaKnown RBP16.89■□□□□ 0.3
USP39-220ENST00000613444 Q6ZUG5 572 aa16.89■□□□□ 0.3
USP39-220ENST00000613444 GMLQ99445 158 aa16.89■□□□□ 0.3
USP39-220ENST00000613444 LRRC2Q9BYS8 371 aa16.89■□□□□ 0.3
USP39-220ENST00000613444 MINDY4BA8MYZ0 360 aa16.89■□□□□ 0.29
USP39-220ENST00000613444 PLCG2P16885 1265 aa16.89■□□□□ 0.29
USP39-220ENST00000613444 CRKP46108 304 aa16.89■□□□□ 0.29
USP39-220ENST00000613444 CHST3Q7LGC8 479 aa16.89■□□□□ 0.29
USP39-220ENST00000613444 TGFBRAP1Q8WUH2 860 aa16.89■□□□□ 0.29
USP39-220ENST00000613444 TEKT1Q969V4 418 aa16.89■□□□□ 0.29
USP39-220ENST00000613444 ZDHHC15Q96MV8 337 aa16.89■□□□□ 0.29
USP39-220ENST00000613444 WDR19Q8NEZ3 1342 aa16.88■□□□□ 0.29
USP39-220ENST00000613444 PSMD14O00487 310 aa16.88■□□□□ 0.29
USP39-220ENST00000613444 RAD17O75943 681 aa16.88■□□□□ 0.29
USP39-220ENST00000613444 FGRP09769 529 aa16.88■□□□□ 0.29
USP39-220ENST00000613444 ANKRD1Q15327 319 aa16.88■□□□□ 0.29
USP39-220ENST00000613444 ME3Q16798 604 aa16.88■□□□□ 0.29
USP39-220ENST00000613444 NIM1KQ8IY84 436 aa16.88■□□□□ 0.29
USP39-220ENST00000613444 FOXD4L1Q9NU39 408 aa16.88■□□□□ 0.29
USP39-220ENST00000613444 SBF1O95248 1867 aa16.88■□□□□ 0.29
USP39-220ENST00000613444 DICER1Q9UPY3 1922 aaKnown RBP16.88■□□□□ 0.29
USP39-220ENST00000613444 USP17L8P0C7I0 530 aa16.88■□□□□ 0.29
USP39-220ENST00000613444 CYP2D6P10635 497 aa16.88■□□□□ 0.29
USP39-220ENST00000613444 MCM5P33992 734 aa16.88■□□□□ 0.29
USP39-220ENST00000613444 USP5P45974 858 aa16.88■□□□□ 0.29
USP39-220ENST00000613444 RASSF7Q02833 373 aa16.88■□□□□ 0.29
USP39-220ENST00000613444 ST3GAL1Q11201 340 aa16.88■□□□□ 0.29
USP39-220ENST00000613444 RSBN1LQ6PCB5 846 aaPredicted RBP16.88■□□□□ 0.29
USP39-220ENST00000613444 CYB5R4Q7L1T6 521 aa16.88■□□□□ 0.29
USP39-220ENST00000613444 TEX11Q8IYF3 940 aa16.88■□□□□ 0.29
USP39-220ENST00000613444 ARPP21Q9UBL0 812 aaPredicted RBP16.88■□□□□ 0.29
USP39-220ENST00000613444 PCDHAC2Q9Y5I4 1007 aa16.88■□□□□ 0.29
USP39-220ENST00000613444 B4E1Z4 1266 aa16.87■□□□□ 0.29
USP39-220ENST00000613444 MFSD6Q6ZSS7 791 aa16.87■□□□□ 0.29
USP39-220ENST00000613444 RALYLQ86SE5 291 aaKnown RBP16.87■□□□□ 0.29
USP39-220ENST00000613444 MCM9Q9NXL9 1143 aa16.87■□□□□ 0.29
USP39-220ENST00000613444 SERPINA10Q9UK55 444 aa16.87■□□□□ 0.29
USP39-220ENST00000613444 FLT1P17948 1338 aa16.87■□□□□ 0.29
USP39-220ENST00000613444 MYO3BQ8WXR4 1341 aa16.87■□□□□ 0.29
USP39-220ENST00000613444 PRC1O43663 620 aa16.87■□□□□ 0.29
USP39-220ENST00000613444 CXCL9Q07325 125 aa16.87■□□□□ 0.29
USP39-220ENST00000613444 TRDNQ13061 729 aa16.87■□□□□ 0.29
USP39-220ENST00000613444 INTS4Q96HW7 963 aaKnown RBP16.87■□□□□ 0.29
USP39-220ENST00000613444 ZSCAN31Q96LW9 406 aaPredicted RBP16.87■□□□□ 0.29
USP39-220ENST00000613444 GPHNQ9NQX3 736 aaPredicted RBP16.87■□□□□ 0.29
USP39-220ENST00000613444 WDHD1O75717 1129 aaPredicted RBP16.86■□□□□ 0.29
USP39-220ENST00000613444 HSP90AA1P07900 732 aaKnown RBP16.86■□□□□ 0.29
USP39-220ENST00000613444 C12orf60Q5U649 245 aa16.86■□□□□ 0.29
USP39-220ENST00000613444 CDC42EP5Q6NZY7 148 aa16.86■□□□□ 0.29
USP39-220ENST00000613444 MAPKAPK5Q8IW41 473 aa16.86■□□□□ 0.29
USP39-220ENST00000613444 BRF1Q92994 677 aa16.86■□□□□ 0.29
USP39-220ENST00000613444 SYT17Q9BSW7 474 aa16.86■□□□□ 0.29
USP39-220ENST00000613444 CNNM2Q9H8M5 875 aa16.86■□□□□ 0.29
USP39-220ENST00000613444 SH2B1Q9NRF2 756 aaPredicted RBP16.86■□□□□ 0.29
USP39-220ENST00000613444 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.86■□□□□ 0.29
USP39-220ENST00000613444 EVCP57679 992 aa16.85■□□□□ 0.29
USP39-220ENST00000613444 RNF41Q9H4P4 317 aaPredicted RBP16.85■□□□□ 0.29
USP39-220ENST00000613444 ZSWIM5Q9P217 1185 aa16.85■□□□□ 0.29
USP39-220ENST00000613444 ROBO3Q96MS0 1386 aa16.85■□□□□ 0.29
USP39-220ENST00000613444 STK11IPQ8N1F8 1099 aa16.85■□□□□ 0.29
USP39-220ENST00000613444 KRT23Q9C075 422 aa16.85■□□□□ 0.29
USP39-220ENST00000613444 KDM4AO75164 1064 aa16.84■□□□□ 0.29
USP39-220ENST00000613444 PCP11498 1178 aaKnown RBP16.84■□□□□ 0.29
USP39-220ENST00000613444 JDP2Q8WYK2 163 aa16.84■□□□□ 0.29
USP39-220ENST00000613444 DDX4Q9NQI0 724 aaKnown RBP16.84■□□□□ 0.29
USP39-220ENST00000613444 USP40Q9NVE5 1235 aa16.84■□□□□ 0.29
USP39-220ENST00000613444 ZBTB12Q9Y330 459 aaPredicted RBP16.84■□□□□ 0.29
USP39-220ENST00000613444 IGDCC4Q8TDY8 1250 aa16.84■□□□□ 0.29
USP39-220ENST00000613444 ORC4O43929 436 aa16.83■□□□□ 0.28
USP39-220ENST00000613444 PLCD1P51178 756 aa16.83■□□□□ 0.28
USP39-220ENST00000613444 APOBRQ0VD83 1088 aa16.83■□□□□ 0.28
USP39-220ENST00000613444 NECAB1Q8N987 351 aa16.83■□□□□ 0.28
USP39-220ENST00000613444 AGBL3Q8NEM8 1001 aa16.83■□□□□ 0.28
USP39-220ENST00000613444 SAP30BPQ9UHR5 308 aaKnown RBP16.83■□□□□ 0.28
USP39-220ENST00000613444 SH2B2O14492 632 aaPredicted RBP16.82■□□□□ 0.28
USP39-220ENST00000613444 CIAPIN1Q6FI81 312 aa16.82■□□□□ 0.28
USP39-220ENST00000613444 SIPA1L1O43166 1804 aa16.82■□□□□ 0.28
USP39-220ENST00000613444 FZD9O00144 591 aa16.82■□□□□ 0.28
USP39-220ENST00000613444 FGD1P98174 961 aa16.82■□□□□ 0.28
USP39-220ENST00000613444 SLC4A8Q2Y0W8 1093 aa16.82■□□□□ 0.28
USP39-220ENST00000613444 CFAP100Q494V2 611 aa16.82■□□□□ 0.28
USP39-220ENST00000613444 RRP12Q5JTH9 1297 aaKnown RBP16.82■□□□□ 0.28
USP39-220ENST00000613444 CCDC83Q8IWF9 413 aa16.82■□□□□ 0.28
USP39-220ENST00000613444 TMEM87BQ96K49 555 aa16.82■□□□□ 0.28
USP39-220ENST00000613444 CWC22Q9HCG8 908 aaKnown RBP16.82■□□□□ 0.28
USP39-220ENST00000613444 BRPF3Q9ULD4 1205 aa16.82■□□□□ 0.28
USP39-220ENST00000613444 PRDM1O75626 825 aa16.81■□□□□ 0.28
USP39-220ENST00000613444 NFIAQ12857 509 aa16.81■□□□□ 0.28
USP39-220ENST00000613444 GTF3C6Q969F1 213 aa16.81■□□□□ 0.28
USP39-220ENST00000613444 PRMT6Q96LA8 375 aaPredicted RBP16.81■□□□□ 0.28
USP39-220ENST00000613444 SENP2Q9HC62 589 aa16.81■□□□□ 0.28
USP39-220ENST00000613444 CHMP5Q9NZZ3 219 aa16.81■□□□□ 0.28
USP39-220ENST00000613444 CIZ1Q9ULV3 898 aaPredicted RBP16.81■□□□□ 0.28
USP39-220ENST00000613444 ANGEL1Q9UNK9 670 aaKnown RBP16.81■□□□□ 0.28
USP39-220ENST00000613444 ESR2Q92731 530 aa16.81■□□□□ 0.28
USP39-220ENST00000613444 DYNLL2Q96FJ2 89 aa16.81■□□□□ 0.28
USP39-220ENST00000613444 ZNF274Q96GC6 653 aaPredicted RBP16.81■□□□□ 0.28
USP39-220ENST00000613444 MTA3Q9BTC8 594 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms