RNA–Protein interactions for RNA: ENST00000605424.5

MMP28-201, Transcript of matrix metallopeptidase 28, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MMP28, Length 1,928 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28-201ENST00000605424 CCDC73Q6ZRK6 1079 aa23.1■■□□□ 1.29
MMP28-201ENST00000605424 AMIGO3Q86WK7 504 aa23.1■■□□□ 1.29
MMP28-201ENST00000605424 RAB11FIP4Q86YS3 637 aa23.1■■□□□ 1.29
MMP28-201ENST00000605424 WASF1Q92558 559 aa23.1■■□□□ 1.29
MMP28-201ENST00000605424 INCENPQ9NQS7 918 aa23.1■■□□□ 1.29
MMP28-201ENST00000605424 CCDC196A0A1B0GTZ2 297 aa23.1■■□□□ 1.29
MMP28-201ENST00000605424 A0A1W2PQ27 194 aa23.1■■□□□ 1.29
MMP28-201ENST00000605424 A0A1W2PQ64 194 aa23.1■■□□□ 1.29
MMP28-201ENST00000605424 A0A1W2PQD8 194 aa23.1■■□□□ 1.29
MMP28-201ENST00000605424 NPHP1O15259 732 aa23.1■■□□□ 1.29
MMP28-201ENST00000605424 PPP2R5BQ15173 497 aa23.1■■□□□ 1.29
MMP28-201ENST00000605424 ADALQ6DHV7 355 aa23.1■■□□□ 1.29
MMP28-201ENST00000605424 LINC00301Q8NCQ3 95 aa23.1■■□□□ 1.29
MMP28-201ENST00000605424 ESR2Q92731 530 aa23.1■■□□□ 1.29
MMP28-201ENST00000605424 SENP2Q9HC62 589 aa23.1■■□□□ 1.29
MMP28-201ENST00000605424 FAM217BQ9NTX9 383 aaPredicted RBP23.1■■□□□ 1.29
MMP28-201ENST00000605424 IFNAR1P17181 557 aa23.09■■□□□ 1.29
MMP28-201ENST00000605424 HMGB2P26583 209 aaKnown RBP23.09■■□□□ 1.29
MMP28-201ENST00000605424 ME1P48163 572 aa23.09■■□□□ 1.29
MMP28-201ENST00000605424 OTUD7BQ6GQQ9 843 aa23.09■■□□□ 1.29
MMP28-201ENST00000605424 SASS6Q6UVJ0 657 aa23.09■■□□□ 1.29
MMP28-201ENST00000605424 NSUN4Q96CB9 384 aaKnown RBP23.09■■□□□ 1.29
MMP28-201ENST00000605424 LEMD3Q9Y2U8 911 aa23.09■■□□□ 1.29
MMP28-201ENST00000605424 MYH13Q9UKX3 1938 aa23.09■■□□□ 1.29
MMP28-201ENST00000605424 FAM160A1Q05DH4 1040 aa23.08■■□□□ 1.29
MMP28-201ENST00000605424 SSRP1Q08945 709 aaKnown RBP23.08■■□□□ 1.29
MMP28-201ENST00000605424 FTOQ9C0B1 505 aaKnown RBP eCLIP23.08■■□□□ 1.29
MMP28-201ENST00000605424 TOMM22Q9NS69 142 aa23.08■■□□□ 1.29
MMP28-201ENST00000605424 MRVI1Q9Y6F6 885 aa23.08■■□□□ 1.29
MMP28-201ENST00000605424 GRAPQ13588 217 aa23.08■■□□□ 1.28
MMP28-201ENST00000605424 TRIM29Q14134 588 aa23.08■■□□□ 1.28
MMP28-201ENST00000605424 NFIXQ14938 502 aa23.08■■□□□ 1.28
MMP28-201ENST00000605424 RRP12Q5JTH9 1297 aaKnown RBP23.08■■□□□ 1.28
MMP28-201ENST00000605424 SPTY2D1Q68D10 685 aaPredicted RBP23.08■■□□□ 1.28
MMP28-201ENST00000605424 GRAPLQ8TC17 118 aaPredicted RBP23.08■■□□□ 1.28
MMP28-201ENST00000605424 SDR42E1Q8WUS8 393 aa23.08■■□□□ 1.28
MMP28-201ENST00000605424 USP25Q9UHP3 1055 aa23.08■■□□□ 1.28
MMP28-201ENST00000605424 FMNL1O95466 1100 aaPredicted RBP23.07■■□□□ 1.28
MMP28-201ENST00000605424 FGRP09769 529 aa23.07■■□□□ 1.28
MMP28-201ENST00000605424 STK38Q15208 465 aa23.07■■□□□ 1.28
MMP28-201ENST00000605424 ILDR2Q71H61 639 aa23.07■■□□□ 1.28
MMP28-201ENST00000605424 CNBD1Q8NA66 436 aa23.07■■□□□ 1.28
MMP28-201ENST00000605424 ENGASEQ8NFI3 743 aa23.07■■□□□ 1.28
MMP28-201ENST00000605424 UBAC1Q9BSL1 405 aa23.07■■□□□ 1.28
MMP28-201ENST00000605424 IRS2Q9Y4H2 1338 aa23.07■■□□□ 1.28
MMP28-201ENST00000605424 POLR3DP05423 398 aaPredicted RBP23.06■■□□□ 1.28
MMP28-201ENST00000605424 SLC27A3Q5K4L6 730 aa23.06■■□□□ 1.28
MMP28-201ENST00000605424 KRT40Q6A162 431 aa23.06■■□□□ 1.28
MMP28-201ENST00000605424 CKAP2LQ8IYA6 745 aa23.06■■□□□ 1.28
MMP28-201ENST00000605424 ZKSCAN5Q9Y2L8 839 aa23.06■■□□□ 1.28
MMP28-201ENST00000605424 MINDY4BA8MYZ0 360 aa23.06■■□□□ 1.28
MMP28-201ENST00000605424 ADCY5O95622 1261 aa23.06■■□□□ 1.28
MMP28-201ENST00000605424 RXRAP19793 462 aa23.06■■□□□ 1.28
MMP28-201ENST00000605424 KLRK1P26718 216 aa23.06■■□□□ 1.28
MMP28-201ENST00000605424 MECOMQ03112 1051 aa23.06■■□□□ 1.28
MMP28-201ENST00000605424 SNW1Q13573 536 aaKnown RBP23.06■■□□□ 1.28
MMP28-201ENST00000605424 SF3A1Q15459 793 aaKnown RBP23.06■■□□□ 1.28
MMP28-201ENST00000605424 ZNF384Q8TF68 577 aa23.06■■□□□ 1.28
MMP28-201ENST00000605424 MRPS27Q92552 414 aaKnown RBP23.06■■□□□ 1.28
MMP28-201ENST00000605424 PCDHA7Q9UN72 937 aa23.06■■□□□ 1.28
MMP28-201ENST00000605424 MAST2Q6P0Q8 1798 aa23.06■■□□□ 1.28
MMP28-201ENST00000605424 TNS1Q9HBL0 1735 aaKnown RBP23.05■■□□□ 1.28
MMP28-201ENST00000605424 TNRC6CQ9HCJ0 1690 aaKnown RBP23.05■■□□□ 1.28
MMP28-201ENST00000605424 KINO60870 393 aaKnown RBP23.05■■□□□ 1.28
MMP28-201ENST00000605424 RTN1Q16799 776 aa23.05■■□□□ 1.28
MMP28-201ENST00000605424 TRIM22Q8IYM9 498 aa23.05■■□□□ 1.28
MMP28-201ENST00000605424 PROM2Q8N271 834 aa23.05■■□□□ 1.28
MMP28-201ENST00000605424 CRNKL1Q9BZJ0 848 aaKnown RBP23.05■■□□□ 1.28
MMP28-201ENST00000605424 ATP8A2Q9NTI2 1148 aa23.05■■□□□ 1.28
MMP28-201ENST00000605424 SPTLC2O15270 562 aa23.04■■□□□ 1.28
MMP28-201ENST00000605424 RANBP6O60518 1105 aaKnown RBP23.04■■□□□ 1.28
MMP28-201ENST00000605424 U2AF2P26368 475 aaKnown RBP eCLIP23.04■■□□□ 1.28
MMP28-201ENST00000605424 NT5C2P49902 561 aa23.04■■□□□ 1.28
MMP28-201ENST00000605424 DYNLL1P63167 89 aaKnown RBP23.04■■□□□ 1.28
MMP28-201ENST00000605424 ANO1Q5XXA6 986 aa23.04■■□□□ 1.28
MMP28-201ENST00000605424 C15orf52Q6ZUT6 534 aaKnown RBP23.04■■□□□ 1.28
MMP28-201ENST00000605424 FSIP1Q8NA03 581 aa23.04■■□□□ 1.28
MMP28-201ENST00000605424 PHKBQ93100 1093 aa23.04■■□□□ 1.28
MMP28-201ENST00000605424 LRRC4BQ9NT99 713 aa23.04■■□□□ 1.28
MMP28-201ENST00000605424 TFCP2L1Q9NZI6 479 aa23.04■■□□□ 1.28
MMP28-201ENST00000605424 KIF28PB7ZC32 967 aa23.04■■□□□ 1.28
MMP28-201ENST00000605424 APBA3O96018 575 aa23.04■■□□□ 1.28
MMP28-201ENST00000605424 PTMAP06454 111 aaKnown RBP23.04■■□□□ 1.28
MMP28-201ENST00000605424 CCDC24Q8N4L8 307 aa23.04■■□□□ 1.28
MMP28-201ENST00000605424 GOLPH3LQ9H4A5 285 aa23.04■■□□□ 1.28
MMP28-201ENST00000605424 CLIC4Q9Y696 253 aa23.04■■□□□ 1.28
MMP28-201ENST00000605424 ZNF500O60304 480 aaPredicted RBP23.03■■□□□ 1.28
MMP28-201ENST00000605424 SEC23AQ15436 765 aa23.03■■□□□ 1.28
MMP28-201ENST00000605424 CCDC144CPQ8IYA2 1237 aa23.03■■□□□ 1.28
MMP28-201ENST00000605424 MYL10Q9BUA6 226 aa23.03■■□□□ 1.28
MMP28-201ENST00000605424 CCDC88AQ3V6T2 1871 aa23.03■■□□□ 1.28
MMP28-201ENST00000605424 XDHP47989 1333 aa23.03■■□□□ 1.28
MMP28-201ENST00000605424 DUOX1Q9NRD9 1551 aa23.02■■□□□ 1.28
MMP28-201ENST00000605424 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.02■■□□□ 1.28
MMP28-201ENST00000605424 ANO6Q4KMQ2 910 aa23.02■■□□□ 1.28
MMP28-201ENST00000605424 ZNF654Q8IZM8 581 aa23.02■■□□□ 1.28
MMP28-201ENST00000605424 FANCBQ8NB91 859 aa23.02■■□□□ 1.28
MMP28-201ENST00000605424 WDR66Q8TBY9 1149 aa23.02■■□□□ 1.28
MMP28-201ENST00000605424 SLC26A6Q9BXS9 759 aa23.02■■□□□ 1.28
MMP28-201ENST00000605424 GJB4Q9NTQ9 266 aa23.02■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms