RNA–Protein interactions for RNA: ENST00000600286.1

USHBP1-210, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 4

Gene USHBP1, Length 598 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-210ENST00000600286 NMIQ13287 307 aaPredicted RBP20.02■□□□□ 0.8
USHBP1-210ENST00000600286 SLFNL1Q499Z3 407 aa20.02■□□□□ 0.8
USHBP1-210ENST00000600286 COL13A1Q5TAT6 717 aaPredicted RBP20.02■□□□□ 0.8
USHBP1-210ENST00000600286 CWC27Q6UX04 472 aaKnown RBP20.02■□□□□ 0.8
USHBP1-210ENST00000600286 LCORLQ8N3X6 602 aa20.02■□□□□ 0.8
USHBP1-210ENST00000600286 ATP8A2Q9NTI2 1148 aa20.02■□□□□ 0.8
USHBP1-210ENST00000600286 MKRN1Q9UHC7 482 aaKnown RBP20.02■□□□□ 0.8
USHBP1-210ENST00000600286 POLR2AP24928 1970 aaKnown RBP20.01■□□□□ 0.79
USHBP1-210ENST00000600286 ADM5C9JUS6 153 aa20.01■□□□□ 0.79
USHBP1-210ENST00000600286 WDHD1O75717 1129 aaPredicted RBP20.01■□□□□ 0.79
USHBP1-210ENST00000600286 HSPA1AP0DMV8 641 aaKnown RBP20.01■□□□□ 0.79
USHBP1-210ENST00000600286 HSPA1BP0DMV9 641 aaKnown RBP20.01■□□□□ 0.79
USHBP1-210ENST00000600286 MAPKAPK5Q8IW41 473 aa20.01■□□□□ 0.79
USHBP1-210ENST00000600286 STRBPQ96SI9 672 aaKnown RBP20.01■□□□□ 0.79
USHBP1-210ENST00000600286 MAST2Q6P0Q8 1798 aa20■□□□□ 0.79
USHBP1-210ENST00000600286 DOCK2Q92608 1830 aa20■□□□□ 0.79
USHBP1-210ENST00000600286 CHGBP05060 677 aa20■□□□□ 0.79
USHBP1-210ENST00000600286 CHMLP26374 656 aa20■□□□□ 0.79
USHBP1-210ENST00000600286 NFIAQ12857 509 aa20■□□□□ 0.79
USHBP1-210ENST00000600286 FAM227BQ96M60 508 aa20■□□□□ 0.79
USHBP1-210ENST00000600286 DHX36Q9H2U1 1008 aaKnown RBP20■□□□□ 0.79
USHBP1-210ENST00000600286 RPAP1Q9BWH6 1393 aaPredicted RBP19.99■□□□□ 0.79
USHBP1-210ENST00000600286 RASSF10A6NK89 507 aa19.99■□□□□ 0.79
USHBP1-210ENST00000600286 PATL2C9JE40 543 aaKnown RBP19.99■□□□□ 0.79
USHBP1-210ENST00000600286 M0R2C6 588 aa19.99■□□□□ 0.79
USHBP1-210ENST00000600286 CDC45O75419 566 aa19.99■□□□□ 0.79
USHBP1-210ENST00000600286 HLA-DOAP06340 250 aa19.99■□□□□ 0.79
USHBP1-210ENST00000600286 FMR1Q06787 632 aaKnown RBP eCLIP19.99■□□□□ 0.79
USHBP1-210ENST00000600286 GIMAP6Q6P9H5 292 aa19.99■□□□□ 0.79
USHBP1-210ENST00000600286 TTC6Q86TZ1 520 aa19.99■□□□□ 0.79
USHBP1-210ENST00000600286 CDCA5Q96FF9 252 aa19.99■□□□□ 0.79
USHBP1-210ENST00000600286 SEC62Q99442 399 aaKnown RBP19.99■□□□□ 0.79
USHBP1-210ENST00000600286 TRIM34Q9BYJ4 488 aa19.99■□□□□ 0.79
USHBP1-210ENST00000600286 TMEM39BQ9GZU3 492 aa19.99■□□□□ 0.79
USHBP1-210ENST00000600286 OSBPL5Q9H0X9 879 aaPredicted RBP19.99■□□□□ 0.79
USHBP1-210ENST00000600286 FAM198AQ9UFP1 575 aa19.99■□□□□ 0.79
USHBP1-210ENST00000600286 SCAF8Q9UPN6 1271 aaKnown RBP19.99■□□□□ 0.79
USHBP1-210ENST00000600286 A0A0D9SFI3 127 aa19.98■□□□□ 0.79
USHBP1-210ENST00000600286 PPP1R12BO60237 982 aaPredicted RBP19.98■□□□□ 0.79
USHBP1-210ENST00000600286 POLR3DP05423 398 aaPredicted RBP19.98■□□□□ 0.79
USHBP1-210ENST00000600286 DCAF15Q66K64 600 aa19.98■□□□□ 0.79
USHBP1-210ENST00000600286 KIAA1211Q6ZU35 1233 aa19.98■□□□□ 0.79
USHBP1-210ENST00000600286 ZNF408Q9H9D4 720 aa19.98■□□□□ 0.79
USHBP1-210ENST00000600286 MCM9Q9NXL9 1143 aa19.98■□□□□ 0.79
USHBP1-210ENST00000600286 FLT1P17948 1338 aa19.98■□□□□ 0.79
USHBP1-210ENST00000600286 RAD50Q92878 1312 aa19.98■□□□□ 0.79
USHBP1-210ENST00000600286 TDO2P48775 406 aa19.97■□□□□ 0.79
USHBP1-210ENST00000600286 VEGFBP49765 207 aa19.97■□□□□ 0.79
USHBP1-210ENST00000600286 TTLL12Q14166 644 aaPredicted RBP19.97■□□□□ 0.79
USHBP1-210ENST00000600286 CST9Q5W186 159 aa19.97■□□□□ 0.79
USHBP1-210ENST00000600286 C2orf69Q8N8R5 385 aa19.97■□□□□ 0.79
USHBP1-210ENST00000600286 SDR42E1Q8WUS8 393 aa19.97■□□□□ 0.79
USHBP1-210ENST00000600286 CSRNP1Q96S65 589 aa19.97■□□□□ 0.79
USHBP1-210ENST00000600286 DDX4Q9NQI0 724 aaKnown RBP19.97■□□□□ 0.79
USHBP1-210ENST00000600286 CCDC171Q6TFL3 1326 aa19.97■□□□□ 0.79
USHBP1-210ENST00000600286 TRAF5O00463 557 aa19.96■□□□□ 0.79
USHBP1-210ENST00000600286 EIF5BO60841 1220 aaKnown RBP19.96■□□□□ 0.79
USHBP1-210ENST00000600286 CELF2O95319 508 aaKnown RBP19.96■□□□□ 0.79
USHBP1-210ENST00000600286 PRAMEF18Q5VWM3 479 aa19.96■□□□□ 0.79
USHBP1-210ENST00000600286 PI4KBQ9UBF8 816 aa19.96■□□□□ 0.79
USHBP1-210ENST00000600286 MYO5AQ9Y4I1 1855 aaKnown RBP19.96■□□□□ 0.79
USHBP1-210ENST00000600286 PRKAB2O43741 272 aa19.95■□□□□ 0.78
USHBP1-210ENST00000600286 NBPF12Q5TAG4 269 aaPredicted RBP19.95■□□□□ 0.78
USHBP1-210ENST00000600286 CCDC129Q6ZRS4 1044 aa19.95■□□□□ 0.78
USHBP1-210ENST00000600286 ARMC9Q7Z3E5 817 aa19.95■□□□□ 0.78
USHBP1-210ENST00000600286 FOXP4Q8IVH2 680 aaPredicted RBP19.95■□□□□ 0.78
USHBP1-210ENST00000600286 CRACR2BQ8N4Y2 399 aaPredicted RBP19.95■□□□□ 0.78
USHBP1-210ENST00000600286 NAPBQ9H115 298 aa19.95■□□□□ 0.78
USHBP1-210ENST00000600286 DCP1AQ9NPI6 582 aaPredicted RBP19.95■□□□□ 0.78
USHBP1-210ENST00000600286 SAP30BPQ9UHR5 308 aaKnown RBP19.95■□□□□ 0.78
USHBP1-210ENST00000600286 GSG1L2A8MUP6 293 aa19.94■□□□□ 0.78
USHBP1-210ENST00000600286 FKBP1BP68106 108 aa19.94■□□□□ 0.78
USHBP1-210ENST00000600286 ZFPM1Q8IX07 1006 aa19.94■□□□□ 0.78
USHBP1-210ENST00000600286 IFNL3Q8IZI9 196 aa19.94■□□□□ 0.78
USHBP1-210ENST00000600286 ARPP21Q9UBL0 812 aaPredicted RBP19.94■□□□□ 0.78
USHBP1-210ENST00000600286 PALD1Q9ULE6 856 aa19.94■□□□□ 0.78
USHBP1-210ENST00000600286 SLC3A2P08195 630 aaKnown RBP19.93■□□□□ 0.78
USHBP1-210ENST00000600286 TEPSINQ96N21 525 aa19.93■□□□□ 0.78
USHBP1-210ENST00000600286 CTNNA3Q9UI47 895 aa19.93■□□□□ 0.78
USHBP1-210ENST00000600286 TAOK2Q9UL54 1235 aa19.93■□□□□ 0.78
USHBP1-210ENST00000600286 MYH7P12883 1935 aa19.93■□□□□ 0.78
USHBP1-210ENST00000600286 DDTLA6NHG4 134 aaPredicted RBP19.92■□□□□ 0.78
USHBP1-210ENST00000600286 SGSM2O43147 1006 aa19.92■□□□□ 0.78
USHBP1-210ENST00000600286 HSPD1P10809 573 aaKnown RBP19.92■□□□□ 0.78
USHBP1-210ENST00000600286 IREB2P48200 963 aaKnown RBP19.92■□□□□ 0.78
USHBP1-210ENST00000600286 ZNF341Q9BYN7 854 aa19.92■□□□□ 0.78
USHBP1-210ENST00000600286 XPO5Q9HAV4 1204 aaKnown RBP eCLIP19.92■□□□□ 0.78
USHBP1-210ENST00000600286 GBA2Q9HCG7 927 aaPredicted RBP19.92■□□□□ 0.78
USHBP1-210ENST00000600286 HERC5Q9UII4 1024 aaKnown RBP19.92■□□□□ 0.78
USHBP1-210ENST00000600286 ECM29Q5VYK3 1845 aa19.91■□□□□ 0.78
USHBP1-210ENST00000600286 USP17L12C9JPN9 530 aa19.91■□□□□ 0.78
USHBP1-210ENST00000600286 USP17L21D6R901 530 aa19.91■□□□□ 0.78
USHBP1-210ENST00000600286 PRKG1Q13976 671 aa19.91■□□□□ 0.78
USHBP1-210ENST00000600286 ALX1Q15699 326 aa19.91■□□□□ 0.78
USHBP1-210ENST00000600286 DEFB115Q30KQ5 88 aa19.91■□□□□ 0.78
USHBP1-210ENST00000600286 ZNF589Q86UQ0 364 aaPredicted RBP19.91■□□□□ 0.78
USHBP1-210ENST00000600286 ESYT1Q9BSJ8 1104 aa19.91■□□□□ 0.78
USHBP1-210ENST00000600286 DSCC1Q9BVC3 393 aa19.91■□□□□ 0.78
USHBP1-210ENST00000600286 ZNF287Q9HBT7 754 aa19.91■□□□□ 0.78
USHBP1-210ENST00000600286 WBP1LQ9NX94 342 aa19.91■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms