RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 PTPRCP08575 1304 aa7.66□□□□□ -1.18
VRK3-220ENST00000600259 MYPNQ86TC9 1320 aa7.66□□□□□ -1.18
VRK3-220ENST00000600259 SALL1Q9NSC2 1324 aa7.66□□□□□ -1.18
VRK3-220ENST00000600259 DDTLA6NHG4 134 aaPredicted RBP7.65□□□□□ -1.18
VRK3-220ENST00000600259 ENTPD3O75355 529 aa7.65□□□□□ -1.18
VRK3-220ENST00000600259 CIAO1O76071 339 aa7.65□□□□□ -1.18
VRK3-220ENST00000600259 LDHBP07195 334 aaKnown RBP7.65□□□□□ -1.18
VRK3-220ENST00000600259 FLT3LGP49771 235 aa7.65□□□□□ -1.18
VRK3-220ENST00000600259 RGS3P49796 1198 aa7.65□□□□□ -1.18
VRK3-220ENST00000600259 IRF5Q13568 498 aa7.65□□□□□ -1.18
VRK3-220ENST00000600259 RFX7Q2KHR2 1363 aa7.65□□□□□ -1.18
VRK3-220ENST00000600259 SCYL3Q8IZE3 742 aa7.65□□□□□ -1.18
VRK3-220ENST00000600259 ZNF384Q8TF68 577 aa7.65□□□□□ -1.18
VRK3-220ENST00000600259 U2AF1L4Q8WU68 220 aaKnown RBP7.65□□□□□ -1.18
VRK3-220ENST00000600259 CRISPLD2Q9H0B8 497 aa7.65□□□□□ -1.18
VRK3-220ENST00000600259 DDX4Q9NQI0 724 aaKnown RBP7.65□□□□□ -1.18
VRK3-220ENST00000600259 ADCY3O60266 1144 aa7.64□□□□□ -1.19
VRK3-220ENST00000600259 ELNP15502 786 aa7.64□□□□□ -1.19
VRK3-220ENST00000600259 ADORA1P30542 326 aa7.64□□□□□ -1.19
VRK3-220ENST00000600259 FCGRTP55899 365 aa7.64□□□□□ -1.19
VRK3-220ENST00000600259 RHBDL3P58872 404 aa7.64□□□□□ -1.19
VRK3-220ENST00000600259 SLFN5Q08AF3 891 aa7.64□□□□□ -1.19
VRK3-220ENST00000600259 ATP2B3Q16720 1220 aa7.64□□□□□ -1.19
VRK3-220ENST00000600259 FASTKD5Q7L8L6 764 aaKnown RBP7.64□□□□□ -1.19
VRK3-220ENST00000600259 TRMT2AQ8IZ69 625 aaKnown RBP7.64□□□□□ -1.19
VRK3-220ENST00000600259 FAM9BQ8IZU0 186 aa7.64□□□□□ -1.19
VRK3-220ENST00000600259 SLAIN1Q8ND83 568 aa7.64□□□□□ -1.19
VRK3-220ENST00000600259 PXYLP1Q8TE99 480 aa7.64□□□□□ -1.19
VRK3-220ENST00000600259 PARK7Q99497 189 aaKnown RBP7.64□□□□□ -1.19
VRK3-220ENST00000600259 PAK6Q9NQU5 681 aaPredicted RBP7.64□□□□□ -1.19
VRK3-220ENST00000600259 CEP126Q9P2H0 1117 aa7.64□□□□□ -1.19
VRK3-220ENST00000600259 FRMD4AQ9P2Q2 1039 aaPredicted RBP7.64□□□□□ -1.19
VRK3-220ENST00000600259 DENND2AQ9ULE3 1009 aa7.64□□□□□ -1.19
VRK3-220ENST00000600259 SLC45A1Q9Y2W3 748 aa7.64□□□□□ -1.19
VRK3-220ENST00000600259 SOX1O00570 391 aaPredicted RBP7.63□□□□□ -1.19
VRK3-220ENST00000600259 SEMA3EO15041 775 aa7.63□□□□□ -1.19
VRK3-220ENST00000600259 ANP32CO43423 234 aa7.63□□□□□ -1.19
VRK3-220ENST00000600259 TBC1D12O60347 775 aa7.63□□□□□ -1.19
VRK3-220ENST00000600259 CTNND1O60716 968 aaKnown RBP7.63□□□□□ -1.19
VRK3-220ENST00000600259 FARP2O94887 1054 aaPredicted RBP7.63□□□□□ -1.19
VRK3-220ENST00000600259 CAPN2P17655 700 aa7.63□□□□□ -1.19
VRK3-220ENST00000600259 MNX1P50219 401 aaPredicted RBP7.63□□□□□ -1.19
VRK3-220ENST00000600259 TIMM10P62072 90 aa7.63□□□□□ -1.19
VRK3-220ENST00000600259 UBXN2AP68543 259 aa7.63□□□□□ -1.19
VRK3-220ENST00000600259 C1QBPQ07021 282 aaKnown RBP7.63□□□□□ -1.19
VRK3-220ENST00000600259 RRP1BQ14684 758 aaKnown RBP7.63□□□□□ -1.19
VRK3-220ENST00000600259 ALDH1L2Q3SY69 923 aa7.63□□□□□ -1.19
VRK3-220ENST00000600259 CCDC102BQ68D86 513 aa7.63□□□□□ -1.19
VRK3-220ENST00000600259 CCDC84Q86UT8 332 aaPredicted RBP7.63□□□□□ -1.19
VRK3-220ENST00000600259 HTATIP2Q9BUP3 242 aa7.63□□□□□ -1.19
VRK3-220ENST00000600259 SIL1Q9H173 461 aa7.63□□□□□ -1.19
VRK3-220ENST00000600259 COPRSQ9NQ92 184 aa7.63□□□□□ -1.19
VRK3-220ENST00000600259 BIN2Q9UBW5 565 aaPredicted RBP7.63□□□□□ -1.19
VRK3-220ENST00000600259 GJD2Q9UKL4 321 aa7.63□□□□□ -1.19
VRK3-220ENST00000600259 PA2G4Q9UQ80 394 aaKnown RBP7.63□□□□□ -1.19
VRK3-220ENST00000600259 NR2E3Q9Y5X4 410 aa7.63□□□□□ -1.19
VRK3-220ENST00000600259 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.63□□□□□ -1.19
VRK3-220ENST00000600259 PDS5AQ29RF7 1337 aaKnown RBP7.62□□□□□ -1.19
VRK3-220ENST00000600259 GPR75-ASB3A0A0A6YYF3 556 aa7.62□□□□□ -1.19
VRK3-220ENST00000600259 INHAP05111 366 aa7.62□□□□□ -1.19
VRK3-220ENST00000600259 IL15P40933 162 aaPredicted RBP7.62□□□□□ -1.19
VRK3-220ENST00000600259 RASGRF1Q13972 1273 aa7.62□□□□□ -1.19
VRK3-220ENST00000600259 TREML2Q5T2D2 321 aa7.62□□□□□ -1.19
VRK3-220ENST00000600259 CDCA7LQ96GN5 454 aa7.62□□□□□ -1.19
VRK3-220ENST00000600259 DEFB118Q96PH6 123 aa7.62□□□□□ -1.19
VRK3-220ENST00000600259 GDF15Q99988 308 aa7.62□□□□□ -1.19
VRK3-220ENST00000600259 PICK1Q9NRD5 415 aa7.62□□□□□ -1.19
VRK3-220ENST00000600259 GNL3LQ9NVN8 582 aaKnown RBP7.62□□□□□ -1.19
VRK3-220ENST00000600259 STAP2Q9UGK3 403 aa7.62□□□□□ -1.19
VRK3-220ENST00000600259 AGTPBP1Q9UPW5 1226 aa7.62□□□□□ -1.19
VRK3-220ENST00000600259 CUL9Q8IWT3 2517 aa7.62□□□□□ -1.19
VRK3-220ENST00000600259 LAMA3Q16787 3333 aa7.62□□□□□ -1.19
VRK3-220ENST00000600259 A0A1W2PPC1 479 aa7.61□□□□□ -1.19
VRK3-220ENST00000600259 E9PSI1 815 aa7.61□□□□□ -1.19
VRK3-220ENST00000600259 TFRCP02786 760 aaKnown RBP7.61□□□□□ -1.19
VRK3-220ENST00000600259 ZEB1P37275 1124 aaPredicted RBP7.61□□□□□ -1.19
VRK3-220ENST00000600259 GADL1Q6ZQY3 521 aa7.61□□□□□ -1.19
VRK3-220ENST00000600259 ANKRD13CQ8N6S4 541 aa7.61□□□□□ -1.19
VRK3-220ENST00000600259 DIS3LQ8TF46 1054 aaKnown RBP7.61□□□□□ -1.19
VRK3-220ENST00000600259 LRCH3Q96II8 777 aa7.61□□□□□ -1.19
VRK3-220ENST00000600259 PAWRQ96IZ0 340 aaKnown RBP7.61□□□□□ -1.19
VRK3-220ENST00000600259 LRRFIP2Q9Y608 721 aaKnown RBP7.61□□□□□ -1.19
VRK3-220ENST00000600259 COL6A3P12111 3177 aa7.61□□□□□ -1.19
VRK3-220ENST00000600259 MROH7-TTC4A0A0A0MT08 1334 aa7.6□□□□□ -1.19
VRK3-220ENST00000600259 TRIM75PA6NK02 468 aa7.6□□□□□ -1.19
VRK3-220ENST00000600259 FAM196BA6NMK8 535 aa7.6□□□□□ -1.19
VRK3-220ENST00000600259 TNPO2O14787 897 aaKnown RBP7.6□□□□□ -1.19
VRK3-220ENST00000600259 EVI5O60447 810 aa7.6□□□□□ -1.19
VRK3-220ENST00000600259 UBTFL1P0CB47 393 aaPredicted RBP7.6□□□□□ -1.19
VRK3-220ENST00000600259 BMP8BP34820 402 aa7.6□□□□□ -1.19
VRK3-220ENST00000600259 BTDP43251 543 aa7.6□□□□□ -1.19
VRK3-220ENST00000600259 JAG1P78504 1218 aa7.6□□□□□ -1.19
VRK3-220ENST00000600259 MECOMQ03112 1051 aa7.6□□□□□ -1.19
VRK3-220ENST00000600259 TRIM32Q13049 653 aa7.6□□□□□ -1.19
VRK3-220ENST00000600259 SPP2Q13103 211 aa7.6□□□□□ -1.19
VRK3-220ENST00000600259 MTX1Q13505 466 aa7.6□□□□□ -1.19
VRK3-220ENST00000600259 FAM110CQ1W6H9 321 aa7.6□□□□□ -1.19
VRK3-220ENST00000600259 SH3D19Q5HYK7 790 aa7.6□□□□□ -1.19
VRK3-220ENST00000600259 POTEEQ6S8J3 1075 aa7.6□□□□□ -1.19
VRK3-220ENST00000600259 ZSCAN29Q8IWY8 852 aaPredicted RBP7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms