RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 MVPQ14764 893 aaKnown RBP12.95□□□□□ -0.34
LIG1-213ENST00000596672 OTOP1Q7RTM1 612 aa12.95□□□□□ -0.34
LIG1-213ENST00000596672 CCDC84Q86UT8 332 aaPredicted RBP12.95□□□□□ -0.34
LIG1-213ENST00000596672 CD99L2Q8TCZ2 262 aa12.95□□□□□ -0.34
LIG1-213ENST00000596672 TMOD2Q9NZR1 351 aa12.95□□□□□ -0.34
LIG1-213ENST00000596672 NDUFB9Q9Y6M9 179 aa12.95□□□□□ -0.34
LIG1-213ENST00000596672 FAM196BA6NMK8 535 aa12.94□□□□□ -0.34
LIG1-213ENST00000596672 CYP2E1P05181 493 aaPredicted RBP12.94□□□□□ -0.34
LIG1-213ENST00000596672 C20orf194Q5TEA3 1177 aa12.94□□□□□ -0.34
LIG1-213ENST00000596672 ERO1BQ86YB8 467 aa12.94□□□□□ -0.34
LIG1-213ENST00000596672 ZNF341Q9BYN7 854 aa12.94□□□□□ -0.34
LIG1-213ENST00000596672 CCDC8Q9H0W5 538 aaPredicted RBP12.94□□□□□ -0.34
LIG1-213ENST00000596672 GPR108Q9NPR9 543 aa12.94□□□□□ -0.34
LIG1-213ENST00000596672 PIH1D3Q9NQM4 214 aaKnown RBP12.94□□□□□ -0.34
LIG1-213ENST00000596672 DOCK3Q8IZD9 2030 aa12.94□□□□□ -0.34
LIG1-213ENST00000596672 ENTPD3O75355 529 aa12.93□□□□□ -0.34
LIG1-213ENST00000596672 ALDH1A1P00352 501 aa12.93□□□□□ -0.34
LIG1-213ENST00000596672 GTF2A2P52657 109 aa12.93□□□□□ -0.34
LIG1-213ENST00000596672 JAG1P78504 1218 aa12.93□□□□□ -0.34
LIG1-213ENST00000596672 PPIL2Q13356 520 aa12.93□□□□□ -0.34
LIG1-213ENST00000596672 NOL9Q5SY16 702 aaKnown RBP12.93□□□□□ -0.34
LIG1-213ENST00000596672 GPAT2Q6NUI2 795 aa12.93□□□□□ -0.34
LIG1-213ENST00000596672 ERICH6Q7L0X2 663 aa12.93□□□□□ -0.34
LIG1-213ENST00000596672 ARHGAP39Q9C0H5 1083 aa12.93□□□□□ -0.34
LIG1-213ENST00000596672 KCNH4Q9UQ05 1017 aa12.93□□□□□ -0.34
LIG1-213ENST00000596672 EXOC6BQ9Y2D4 811 aa12.93□□□□□ -0.34
LIG1-213ENST00000596672 CSADQ9Y600 493 aa12.93□□□□□ -0.34
LIG1-213ENST00000596672 ADGRA2Q96PE1 1338 aa12.92□□□□□ -0.34
LIG1-213ENST00000596672 ZAP70P43403 619 aa12.92□□□□□ -0.34
LIG1-213ENST00000596672 PICALMQ13492 652 aa12.92□□□□□ -0.34
LIG1-213ENST00000596672 FBXO46Q6PJ61 603 aaPredicted RBP12.92□□□□□ -0.34
LIG1-213ENST00000596672 DZIP1Q86YF9 867 aaKnown RBP12.92□□□□□ -0.34
LIG1-213ENST00000596672 FTSJ3Q8IY81 847 aaKnown RBP12.92□□□□□ -0.34
LIG1-213ENST00000596672 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.92□□□□□ -0.34
LIG1-213ENST00000596672 SH3RF3Q8TEJ3 882 aaPredicted RBP12.92□□□□□ -0.34
LIG1-213ENST00000596672 COG6Q9Y2V7 657 aa12.92□□□□□ -0.34
LIG1-213ENST00000596672 TRIM17Q9Y577 477 aa12.92□□□□□ -0.34
LIG1-213ENST00000596672 FOCADQ5VW36 1801 aa12.91□□□□□ -0.34
LIG1-213ENST00000596672 PPATQ06203 517 aa12.91□□□□□ -0.34
LIG1-213ENST00000596672 TAF1CQ15572 869 aaPredicted RBP12.91□□□□□ -0.34
LIG1-213ENST00000596672 SHROOM1Q2M3G4 852 aaPredicted RBP12.91□□□□□ -0.34
LIG1-213ENST00000596672 DCAF15Q66K64 600 aa12.91□□□□□ -0.34
LIG1-213ENST00000596672 ZGPATQ8N5A5 531 aaKnown RBP12.91□□□□□ -0.34
LIG1-213ENST00000596672 ANTXR1Q9H6X2 564 aa12.91□□□□□ -0.34
LIG1-213ENST00000596672 ZBTB40Q9NUA8 1239 aa12.91□□□□□ -0.34
LIG1-213ENST00000596672 DOCK1Q14185 1865 aa12.91□□□□□ -0.34
LIG1-213ENST00000596672 MAST2Q6P0Q8 1798 aa12.9□□□□□ -0.34
LIG1-213ENST00000596672 DYNLL1P63167 89 aaKnown RBP12.9□□□□□ -0.34
LIG1-213ENST00000596672 SP3Q02447 781 aa12.9□□□□□ -0.34
LIG1-213ENST00000596672 MLLT1Q03111 559 aaPredicted RBP12.9□□□□□ -0.34
LIG1-213ENST00000596672 PKN2Q16513 984 aaKnown RBP12.9□□□□□ -0.34
LIG1-213ENST00000596672 GORABQ5T7V8 394 aa12.9□□□□□ -0.34
LIG1-213ENST00000596672 SPTY2D1Q68D10 685 aaPredicted RBP12.9□□□□□ -0.34
LIG1-213ENST00000596672 ZNF512BQ96KM6 892 aaPredicted RBP12.9□□□□□ -0.34
LIG1-213ENST00000596672 RAI14Q9P0K7 980 aa12.9□□□□□ -0.34
LIG1-213ENST00000596672 PTPN22Q9Y2R2 807 aa12.9□□□□□ -0.34
LIG1-213ENST00000596672 ECM2O94769 699 aaPredicted RBP12.89□□□□□ -0.35
LIG1-213ENST00000596672 UQCRFS1P1P0C7P4 283 aa12.89□□□□□ -0.35
LIG1-213ENST00000596672 CETPP11597 493 aa12.89□□□□□ -0.35
LIG1-213ENST00000596672 PTPRAP18433 802 aa12.89□□□□□ -0.35
LIG1-213ENST00000596672 SNAPC2Q13487 334 aa12.89□□□□□ -0.35
LIG1-213ENST00000596672 C17orf99Q6UX52 265 aa12.89□□□□□ -0.35
LIG1-213ENST00000596672 YTHDC1Q96MU7 727 aaKnown RBP12.89□□□□□ -0.35
LIG1-213ENST00000596672 DNAJC18Q9H819 358 aa12.89□□□□□ -0.35
LIG1-213ENST00000596672 IL1RAPL2Q9NP60 686 aa12.89□□□□□ -0.35
LIG1-213ENST00000596672 ATAD5Q96QE3 1844 aa12.89□□□□□ -0.35
LIG1-213ENST00000596672 POTEFA5A3E0 1075 aa12.88□□□□□ -0.35
LIG1-213ENST00000596672 TLR2O60603 784 aa12.88□□□□□ -0.35
LIG1-213ENST00000596672 NPM3O75607 178 aaKnown RBP12.88□□□□□ -0.35
LIG1-213ENST00000596672 PPP4CP60510 307 aa12.88□□□□□ -0.35
LIG1-213ENST00000596672 EVX2Q03828 476 aa12.88□□□□□ -0.35
LIG1-213ENST00000596672 OS9Q13438 667 aaPredicted RBP12.88□□□□□ -0.35
LIG1-213ENST00000596672 TTC39AQ5SRH9 613 aa12.88□□□□□ -0.35
LIG1-213ENST00000596672 SCYL3Q8IZE3 742 aa12.88□□□□□ -0.35
LIG1-213ENST00000596672 OSBPL5Q9H0X9 879 aaPredicted RBP12.88□□□□□ -0.35
LIG1-213ENST00000596672 AATFQ9NY61 560 aaKnown RBP eCLIP12.88□□□□□ -0.35
LIG1-213ENST00000596672 LRP2BPQ9P2M1 347 aa12.88□□□□□ -0.35
LIG1-213ENST00000596672 CPA4Q9UI42 421 aa12.88□□□□□ -0.35
LIG1-213ENST00000596672 AFG3L2Q9Y4W6 797 aa12.88□□□□□ -0.35
LIG1-213ENST00000596672 PDHXO00330 501 aa12.87□□□□□ -0.35
LIG1-213ENST00000596672 CHGBP05060 677 aa12.87□□□□□ -0.35
LIG1-213ENST00000596672 CYP2C8P10632 490 aa12.87□□□□□ -0.35
LIG1-213ENST00000596672 SLFNL1Q499Z3 407 aa12.87□□□□□ -0.35
LIG1-213ENST00000596672 OTUD7BQ6GQQ9 843 aa12.87□□□□□ -0.35
LIG1-213ENST00000596672 ANKRD23Q86SG2 305 aa12.87□□□□□ -0.35
LIG1-213ENST00000596672 ZSCAN29Q8IWY8 852 aaPredicted RBP12.87□□□□□ -0.35
LIG1-213ENST00000596672 TEX11Q8IYF3 940 aa12.87□□□□□ -0.35
LIG1-213ENST00000596672 HOOK2Q96ED9 719 aa12.87□□□□□ -0.35
LIG1-213ENST00000596672 EDC3Q96F86 508 aaKnown RBP12.87□□□□□ -0.35
LIG1-213ENST00000596672 ERO1AQ96HE7 468 aa12.87□□□□□ -0.35
LIG1-213ENST00000596672 EFCC1Q9HA90 598 aa12.87□□□□□ -0.35
LIG1-213ENST00000596672 ZFYVE28Q9HCC9 887 aa12.87□□□□□ -0.35
LIG1-213ENST00000596672 RCAN3Q9UKA8 241 aa12.87□□□□□ -0.35
LIG1-213ENST00000596672 PTCH2Q9Y6C5 1203 aa12.87□□□□□ -0.35
LIG1-213ENST00000596672 ZHX2Q9Y6X8 837 aa12.87□□□□□ -0.35
LIG1-213ENST00000596672 COL2A1P02458 1487 aaPredicted RBP12.86□□□□□ -0.35
LIG1-213ENST00000596672 A0A0G2JLL6 359 aaPredicted RBP12.86□□□□□ -0.35
LIG1-213ENST00000596672 TBC1D12O60347 775 aa12.86□□□□□ -0.35
LIG1-213ENST00000596672 CCDC158Q5M9N0 1113 aa12.86□□□□□ -0.35
LIG1-213ENST00000596672 NAA16Q6N069 864 aaPredicted RBP12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms