RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 GOLIM4O00461 696 aa13.21□□□□□ -0.29
CLIP3-203ENST00000586457 SMARCA5O60264 1052 aaPredicted RBP13.21□□□□□ -0.29
CLIP3-203ENST00000586457 USP5P45974 858 aa13.21□□□□□ -0.29
CLIP3-203ENST00000586457 GTF2A2P52657 109 aa13.21□□□□□ -0.29
CLIP3-203ENST00000586457 VGLL4Q14135 290 aa13.21□□□□□ -0.29
CLIP3-203ENST00000586457 ZKSCAN4Q969J2 545 aaPredicted RBP13.21□□□□□ -0.29
CLIP3-203ENST00000586457 OTUD5Q96G74 571 aa13.21□□□□□ -0.29
CLIP3-203ENST00000586457 BOLA2Q9H3K6 86 aa13.21□□□□□ -0.29
CLIP3-203ENST00000586457 DCTPP1Q9H773 170 aa13.21□□□□□ -0.29
CLIP3-203ENST00000586457 PIH1D3Q9NQM4 214 aaKnown RBP13.21□□□□□ -0.29
CLIP3-203ENST00000586457 PICK1Q9NRD5 415 aa13.21□□□□□ -0.29
CLIP3-203ENST00000586457 RPAP1Q9BWH6 1393 aaPredicted RBP13.2□□□□□ -0.3
CLIP3-203ENST00000586457 SLC9C2Q5TAH2 1124 aa13.2□□□□□ -0.3
CLIP3-203ENST00000586457 ZSCAN25Q6NSZ9 544 aa13.2□□□□□ -0.3
CLIP3-203ENST00000586457 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.2□□□□□ -0.3
CLIP3-203ENST00000586457 ERO1BQ86YB8 467 aa13.2□□□□□ -0.3
CLIP3-203ENST00000586457 ZFPM1Q8IX07 1006 aa13.2□□□□□ -0.3
CLIP3-203ENST00000586457 CRACR2BQ8N4Y2 399 aaPredicted RBP13.2□□□□□ -0.3
CLIP3-203ENST00000586457 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.2□□□□□ -0.3
CLIP3-203ENST00000586457 SH3RF3Q8TEJ3 882 aaPredicted RBP13.2□□□□□ -0.3
CLIP3-203ENST00000586457 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.2□□□□□ -0.3
CLIP3-203ENST00000586457 TGFBRAP1Q8WUH2 860 aa13.2□□□□□ -0.3
CLIP3-203ENST00000586457 DHX36Q9H2U1 1008 aaKnown RBP13.2□□□□□ -0.3
CLIP3-203ENST00000586457 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.2□□□□□ -0.3
CLIP3-203ENST00000586457 NDUFB9Q9Y6M9 179 aa13.2□□□□□ -0.3
CLIP3-203ENST00000586457 NPM3O75607 178 aaKnown RBP13.19□□□□□ -0.3
CLIP3-203ENST00000586457 TBC1D8O95759 1140 aa13.19□□□□□ -0.3
CLIP3-203ENST00000586457 ATP5JP18859 108 aa13.19□□□□□ -0.3
CLIP3-203ENST00000586457 PPP4CP60510 307 aa13.19□□□□□ -0.3
CLIP3-203ENST00000586457 MIGA1Q8NAN2 632 aa13.19□□□□□ -0.3
CLIP3-203ENST00000586457 RWDD1Q9H446 243 aaPredicted RBP13.19□□□□□ -0.3
CLIP3-203ENST00000586457 ECHDC1Q9NTX5 307 aa13.19□□□□□ -0.3
CLIP3-203ENST00000586457 PAG1Q9NWQ8 432 aa13.19□□□□□ -0.3
CLIP3-203ENST00000586457 SUPT16HQ9Y5B9 1047 aaKnown RBP13.19□□□□□ -0.3
CLIP3-203ENST00000586457 SSC5DA1L4H1 1573 aa13.19□□□□□ -0.3
CLIP3-203ENST00000586457 MAGEB6P1A0A0J9YX57 407 aa13.18□□□□□ -0.3
CLIP3-203ENST00000586457 HLA-DOAP06340 250 aa13.18□□□□□ -0.3
CLIP3-203ENST00000586457 CETPP11597 493 aa13.18□□□□□ -0.3
CLIP3-203ENST00000586457 RHBDL3P58872 404 aa13.18□□□□□ -0.3
CLIP3-203ENST00000586457 PPATQ06203 517 aa13.18□□□□□ -0.3
CLIP3-203ENST00000586457 SNAPC2Q13487 334 aa13.18□□□□□ -0.3
CLIP3-203ENST00000586457 IFNL1Q8IU54 200 aa13.18□□□□□ -0.3
CLIP3-203ENST00000586457 MAPKAPK5Q8IW41 473 aa13.18□□□□□ -0.3
CLIP3-203ENST00000586457 OSBPL5Q9H0X9 879 aaPredicted RBP13.18□□□□□ -0.3
CLIP3-203ENST00000586457 ANTXR1Q9H6X2 564 aa13.18□□□□□ -0.3
CLIP3-203ENST00000586457 PI4KBQ9UBF8 816 aa13.18□□□□□ -0.3
CLIP3-203ENST00000586457 PCDHB15Q9Y5E8 787 aa13.18□□□□□ -0.3
CLIP3-203ENST00000586457 AKAP11Q9UKA4 1901 aa13.17□□□□□ -0.3
CLIP3-203ENST00000586457 THSD7BQ9C0I4 1608 aa13.17□□□□□ -0.3
CLIP3-203ENST00000586457 CCL15-CCL14A0A0B4J2E2 113 aa13.17□□□□□ -0.3
CLIP3-203ENST00000586457 DDTLA6NHG4 134 aaPredicted RBP13.17□□□□□ -0.3
CLIP3-203ENST00000586457 SPDYE5A6NIY4 337 aa13.17□□□□□ -0.3
CLIP3-203ENST00000586457 ERC2O15083 957 aa13.17□□□□□ -0.3
CLIP3-203ENST00000586457 INPP5BP32019 993 aa13.17□□□□□ -0.3
CLIP3-203ENST00000586457 CCL15Q16663 113 aa13.17□□□□□ -0.3
CLIP3-203ENST00000586457 LRRFIP1Q32MZ4 808 aaKnown RBP13.17□□□□□ -0.3
CLIP3-203ENST00000586457 ANKRD45Q5TZF3 282 aa13.17□□□□□ -0.3
CLIP3-203ENST00000586457 ZNF384Q8TF68 577 aa13.17□□□□□ -0.3
CLIP3-203ENST00000586457 GCC1Q96CN9 775 aa13.17□□□□□ -0.3
CLIP3-203ENST00000586457 DDRGK1Q96HY6 314 aa13.17□□□□□ -0.3
CLIP3-203ENST00000586457 HAUS7Q99871 368 aa13.17□□□□□ -0.3
CLIP3-203ENST00000586457 DDX4Q9NQI0 724 aaKnown RBP13.17□□□□□ -0.3
CLIP3-203ENST00000586457 CTNND1O60716 968 aaKnown RBP13.16□□□□□ -0.3
CLIP3-203ENST00000586457 CAPN15O75808 1086 aa13.16□□□□□ -0.3
CLIP3-203ENST00000586457 DYNLL1P63167 89 aaKnown RBP13.16□□□□□ -0.3
CLIP3-203ENST00000586457 PPIL2Q13356 520 aa13.16□□□□□ -0.3
CLIP3-203ENST00000586457 IFFO2Q5TF58 517 aa13.16□□□□□ -0.3
CLIP3-203ENST00000586457 FOXP4Q8IVH2 680 aaPredicted RBP13.16□□□□□ -0.3
CLIP3-203ENST00000586457 AMOTL1Q8IY63 956 aa13.16□□□□□ -0.3
CLIP3-203ENST00000586457 CRNKL1Q9BZJ0 848 aaKnown RBP13.16□□□□□ -0.3
CLIP3-203ENST00000586457 SAP30BPQ9UHR5 308 aaKnown RBP13.16□□□□□ -0.3
CLIP3-203ENST00000586457 HERC5Q9UII4 1024 aaKnown RBP13.16□□□□□ -0.3
CLIP3-203ENST00000586457 ZNF112Q9UJU3 913 aa13.16□□□□□ -0.3
CLIP3-203ENST00000586457 SNCAIPQ9Y6H5 919 aa13.16□□□□□ -0.3
CLIP3-203ENST00000586457 TBC1D12O60347 775 aa13.15□□□□□ -0.3
CLIP3-203ENST00000586457 POLR3DP05423 398 aaPredicted RBP13.15□□□□□ -0.3
CLIP3-203ENST00000586457 PDE6AP16499 860 aa13.15□□□□□ -0.3
CLIP3-203ENST00000586457 DGKZQ13574 1117 aa13.15□□□□□ -0.3
CLIP3-203ENST00000586457 ADGRA1Q86SQ6 560 aa13.15□□□□□ -0.3
CLIP3-203ENST00000586457 TTC6Q86TZ1 520 aa13.15□□□□□ -0.3
CLIP3-203ENST00000586457 SCYL3Q8IZE3 742 aa13.15□□□□□ -0.3
CLIP3-203ENST00000586457 CNKSR2Q8WXI2 1034 aa13.15□□□□□ -0.3
CLIP3-203ENST00000586457 ZFYVE28Q9HCC9 887 aa13.15□□□□□ -0.3
CLIP3-203ENST00000586457 ZHX2Q9Y6X8 837 aa13.15□□□□□ -0.3
CLIP3-203ENST00000586457 ZNF532Q9HCE3 1301 aa13.14□□□□□ -0.31
CLIP3-203ENST00000586457 IRF6O14896 467 aa13.14□□□□□ -0.31
CLIP3-203ENST00000586457 FKTNO75072 461 aa13.14□□□□□ -0.31
CLIP3-203ENST00000586457 GJA5P36382 358 aa13.14□□□□□ -0.31
CLIP3-203ENST00000586457 ARHGEF6Q15052 776 aa13.14□□□□□ -0.31
CLIP3-203ENST00000586457 SH3BP5LQ7L8J4 393 aa13.14□□□□□ -0.31
CLIP3-203ENST00000586457 PALD1Q9ULE6 856 aa13.14□□□□□ -0.31
CLIP3-203ENST00000586457 FLT1P17948 1338 aa13.13□□□□□ -0.31
CLIP3-203ENST00000586457 ATRNL1Q5VV63 1379 aa13.13□□□□□ -0.31
CLIP3-203ENST00000586457 GPR25O00155 361 aa13.13□□□□□ -0.31
CLIP3-203ENST00000586457 HDAC1Q13547 482 aaPredicted RBP13.13□□□□□ -0.31
CLIP3-203ENST00000586457 TAF1CQ15572 869 aaPredicted RBP13.13□□□□□ -0.31
CLIP3-203ENST00000586457 SLC4A8Q2Y0W8 1093 aa13.13□□□□□ -0.31
CLIP3-203ENST00000586457 NOL9Q5SY16 702 aaKnown RBP13.13□□□□□ -0.31
CLIP3-203ENST00000586457 FASTKD5Q7L8L6 764 aaKnown RBP13.13□□□□□ -0.31
CLIP3-203ENST00000586457 EDC3Q96F86 508 aaKnown RBP13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms