RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	REST	Q13127	1097 aa		13.39	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	SUSD4	Q5VX71	490 aa		13.39	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	SEPT12	Q8IYM1	358 aa		13.39	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	CLSTN2	Q9H4D0	955 aa		13.39	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	DOT1L	Q8TEK3	1739 aa		13.39	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	ERICH4	A6NGS2	130 aa		13.39	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	SNAP23	O00161	211 aa		13.39	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	POLR3D	P05423	398 aa	Predicted RBP	13.39	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	HSPD1	P10809	573 aa	Known RBP	13.39	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	NAP1L1	P55209	391 aa	Known RBP	13.39	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	STK11IP	Q8N1F8	1099 aa		13.39	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	LINC00116	Q8NCU8	138 aa		13.39	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	SMARCC1	Q92922	1105 aa	Predicted RBP	13.39	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	USP28	Q96RU2	1077 aa		13.39	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	PAIP2	Q9BPZ3	127 aa	Known RBP	13.39	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	GTPBP4	Q9BZE4	634 aa	Known RBP	13.39	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	GOLGA6L19	H0YKK7	550 aa		13.38	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	GNPAT	O15228	680 aa		13.38	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	ME1	P48163	572 aa		13.38	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	METTL24	Q5JXM2	366 aa		13.38	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	RPAIN	Q86UA6	219 aa		13.38	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	RBM28	Q9NW13	759 aa	Known RBP	13.38	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	FOXP2	O15409	715 aa		13.38	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	IL15	P40933	162 aa	Predicted RBP	13.38	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	RBM5	P52756	815 aa	Known RBP eCLIP	13.38	□□□□□ -0.27	9e-32	■■■■□ 20.3
CDK5RAP3-231	ENST00000584063	TTLL11	Q8NHH1	800 aa		13.38	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	METTL14	Q9HCE5	456 aa	Known RBP	13.38	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	HMG20B	Q9P0W2	317 aa		13.38	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	CCNL1	Q9UK58	526 aa	Predicted RBP	13.38	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063		U3KPZ7	1027 aa	Predicted RBP	13.38	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	SPATA31A6	Q5VVP1	1343 aa		13.38	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063		A0A1B0GVL5	298 aa		13.37	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	PTPDC1	A2A3K4	754 aa		13.37	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	BECN2	A8MW95	431 aa		13.37	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063		E7EWF7	191 aa		13.37	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	PAX7	P23759	505 aa		13.37	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	ANKRD1	Q15327	319 aa		13.37	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	MTERF4	Q7Z6M4	381 aa	Known RBP	13.37	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	NSUN7	Q8NE18	718 aa	Known RBP	13.37	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	SRCAP	Q6ZRS2	3230 aa		13.37	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	NCBP1	Q09161	790 aa	Known RBP	13.37	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	TSGA10IP	Q3SY00	556 aa		13.37	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	SRP68	Q9UHB9	627 aa	Known RBP	13.37	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	SMAP	O00193	183 aa		13.37	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	WASHC4	Q2M389	1173 aa		13.37	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	CACTIN-AS1	Q8N1I8	211 aa		13.37	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	SEC31B	Q9NQW1	1179 aa		13.37	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	ANKRD18B	A2A2Z9	1011 aa		13.36	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	ZAP70	P43403	619 aa		13.36	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	CTSW	P56202	376 aa		13.36	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	TRIM28	Q13263	835 aa	Known RBP	13.36	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	ZMYM1	Q5SVZ6	1142 aa		13.36	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	AOPEP	Q8N6M6	819 aa		13.36	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	MAF1	Q9H063	256 aa		13.36	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	DDX19A	Q9NUU7	478 aa	Known RBP	13.36	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	TPX2	Q9ULW0	747 aa	Known RBP	13.36	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	GTF2F1	P35269	517 aa	Known RBP eCLIP	13.36	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	UTRN	P46939	3433 aa		13.36	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	XAGE2	Q96GT9	111 aa		13.36	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	UTP14A	Q9BVJ6	771 aa	Known RBP	13.36	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	TRIM34	Q9BYJ4	488 aa		13.36	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	PUS7L	Q9H0K6	701 aa	Known RBP	13.36	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	SH3TC1	Q8TE82	1336 aa		13.35	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	ADD1	P35611	737 aa	Known RBP	13.35	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	HSP90AA4P	Q58FG1	418 aa		13.35	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	ILDR1	Q86SU0	546 aa	Predicted RBP	13.35	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	PLA2G4D	Q86XP0	818 aa		13.35	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	FSIP1	Q8NA03	581 aa		13.35	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	MYCBP	Q99417	103 aa	Predicted RBP	13.35	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	ARPC5L	Q9BPX5	153 aa		13.35	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	UBA5	Q9GZZ9	404 aa		13.35	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	KIAA1522	Q9P206	1035 aa	Predicted RBP	13.35	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	WNK3	Q9BYP7	1800 aa		13.35	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	ERVV-1	B6SEH8	477 aa		13.35	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	COQ9	O75208	318 aa		13.35	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	CAMTA2	O94983	1202 aa		13.35	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	RXRA	P19793	462 aa		13.35	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	LMNB1	P20700	586 aa		13.35	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	DHX32	Q7L7V1	743 aa	Known RBP	13.35	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	ZC3H15	Q8WU90	426 aa	Known RBP	13.35	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	MPHOSPH8	Q99549	860 aa		13.35	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	INCENP	Q9NQS7	918 aa		13.35	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	TRPC5	Q9UL62	973 aa	Predicted RBP	13.35	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	ELP1	O95163	1332 aa		13.34	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	RNF113A	O15541	343 aa	Known RBP	13.34	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	PDE8A	O60658	829 aa		13.34	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	SKIL	P12757	684 aa		13.34	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	KRT32	Q14532	448 aa		13.34	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	TTC30A	Q86WT1	665 aa		13.34	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	CCDC112	Q8NEF3	446 aa		13.34	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	SDF4	Q9BRK5	362 aa		13.34	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	ANAPC4	Q9UJX5	808 aa		13.34	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	ZPR1	O75312	459 aa		13.34	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	EXOSC10	Q01780	885 aa	Known RBP	13.34	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	TTC39A	Q5SRH9	613 aa		13.34	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	ZNF34	Q8IZ26	560 aa		13.34	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	UBR2	Q8IWV8	1755 aa		13.34	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	NWD2	Q9ULI1	1742 aa		13.34	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	PFKFB2	O60825	505 aa		13.33	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	WDHD1	O75717	1129 aa	Predicted RBP	13.33	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 198.6 ms