RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 SGO2Q562F6 1265 aa7.61□□□□□ -1.19
SMCHD1-204ENST00000581226 ZC3H12AQ5D1E8 599 aaKnown RBP7.61□□□□□ -1.19
SMCHD1-204ENST00000581226 FAM20CQ8IXL6 584 aa7.61□□□□□ -1.19
SMCHD1-204ENST00000581226 GAL3ST3Q96A11 431 aa7.61□□□□□ -1.19
SMCHD1-204ENST00000581226 KCNF1Q9H3M0 494 aa7.61□□□□□ -1.19
SMCHD1-204ENST00000581226 PCDHGC5Q9Y5F6 944 aa7.61□□□□□ -1.19
SMCHD1-204ENST00000581226 DCDC2CA8MYV0 355 aa7.6□□□□□ -1.19
SMCHD1-204ENST00000581226 RXRBP28702 533 aa7.6□□□□□ -1.19
SMCHD1-204ENST00000581226 LMNB2Q03252 620 aa7.6□□□□□ -1.19
SMCHD1-204ENST00000581226 DIEXFQ68CQ4 756 aaKnown RBP7.6□□□□□ -1.19
SMCHD1-204ENST00000581226 CDPF1Q6NVV7 123 aa7.6□□□□□ -1.19
SMCHD1-204ENST00000581226 PRR23CQ6ZRP0 262 aa7.6□□□□□ -1.19
SMCHD1-204ENST00000581226 TRIM42Q8IWZ5 723 aa7.6□□□□□ -1.19
SMCHD1-204ENST00000581226 Q8N3U1 123 aa7.6□□□□□ -1.19
SMCHD1-204ENST00000581226 ELMO3Q96BJ8 720 aa7.6□□□□□ -1.19
SMCHD1-204ENST00000581226 RHOVQ96L33 236 aa7.6□□□□□ -1.19
SMCHD1-204ENST00000581226 FANCD2OSQ96PS1 177 aa7.6□□□□□ -1.19
SMCHD1-204ENST00000581226 ATXN3LQ9H3M9 355 aa7.6□□□□□ -1.19
SMCHD1-204ENST00000581226 FAM105AQ9NUU6 356 aa7.6□□□□□ -1.19
SMCHD1-204ENST00000581226 HIF3AQ9Y2N7 669 aa7.6□□□□□ -1.19
SMCHD1-204ENST00000581226 CSADQ9Y600 493 aa7.6□□□□□ -1.19
SMCHD1-204ENST00000581226 FAM160A1Q05DH4 1040 aa7.59□□□□□ -1.19
SMCHD1-204ENST00000581226 INPP5AQ14642 412 aa7.59□□□□□ -1.19
SMCHD1-204ENST00000581226 SNAP47Q5SQN1 464 aa7.59□□□□□ -1.19
SMCHD1-204ENST00000581226 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.59□□□□□ -1.19
SMCHD1-204ENST00000581226 C12orf40Q86WS4 652 aa7.59□□□□□ -1.19
SMCHD1-204ENST00000581226 FBLIM1Q8WUP2 373 aa7.59□□□□□ -1.19
SMCHD1-204ENST00000581226 PSMG3-AS1Q96PY0 264 aa7.59□□□□□ -1.19
SMCHD1-204ENST00000581226 YIPF2Q9BWQ6 316 aa7.59□□□□□ -1.19
SMCHD1-204ENST00000581226 PIDD1Q9HB75 910 aa7.59□□□□□ -1.19
SMCHD1-204ENST00000581226 PICK1Q9NRD5 415 aa7.59□□□□□ -1.19
SMCHD1-204ENST00000581226 DISC1Q9NRI5 854 aa7.59□□□□□ -1.19
SMCHD1-204ENST00000581226 RAXQ9Y2V3 346 aa7.59□□□□□ -1.19
SMCHD1-204ENST00000581226 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.58□□□□□ -1.2
SMCHD1-204ENST00000581226 FURINP09958 794 aa7.58□□□□□ -1.2
SMCHD1-204ENST00000581226 H2AFB1P0C5Y9 115 aa7.58□□□□□ -1.2
SMCHD1-204ENST00000581226 H2AFB2P0C5Z0 115 aa7.58□□□□□ -1.2
SMCHD1-204ENST00000581226 RAB6AP20340 208 aa7.58□□□□□ -1.2
SMCHD1-204ENST00000581226 MAP4P27816 1152 aaKnown RBP7.58□□□□□ -1.2
SMCHD1-204ENST00000581226 ERVK-24P63145 666 aa7.58□□□□□ -1.2
SMCHD1-204ENST00000581226 NKAPLQ5M9Q1 402 aa7.58□□□□□ -1.2
SMCHD1-204ENST00000581226 C9orf131Q5VYM1 1079 aa7.58□□□□□ -1.2
SMCHD1-204ENST00000581226 LRFN4Q6PJG9 635 aa7.58□□□□□ -1.2
SMCHD1-204ENST00000581226 BNC2Q6ZN30 1099 aaPredicted RBP7.58□□□□□ -1.2
SMCHD1-204ENST00000581226 BEND4Q6ZU67 534 aa7.58□□□□□ -1.2
SMCHD1-204ENST00000581226 HDXQ7Z353 690 aa7.58□□□□□ -1.2
SMCHD1-204ENST00000581226 CCDC84Q86UT8 332 aaPredicted RBP7.58□□□□□ -1.2
SMCHD1-204ENST00000581226 USP48Q86UV5 1035 aa7.58□□□□□ -1.2
SMCHD1-204ENST00000581226 GOLM1Q8NBJ4 401 aa7.58□□□□□ -1.2
SMCHD1-204ENST00000581226 GSX1Q9H4S2 264 aaPredicted RBP7.58□□□□□ -1.2
SMCHD1-204ENST00000581226 STOML1Q9UBI4 398 aa7.58□□□□□ -1.2
SMCHD1-204ENST00000581226 RNGTTO60942 597 aaKnown RBP7.57□□□□□ -1.2
SMCHD1-204ENST00000581226 EIF4A3P38919 411 aaKnown RBP7.57□□□□□ -1.2
SMCHD1-204ENST00000581226 CDK8P49336 464 aa7.57□□□□□ -1.2
SMCHD1-204ENST00000581226 HDLBPQ00341 1268 aaKnown RBP7.57□□□□□ -1.2
SMCHD1-204ENST00000581226 TTLL4Q14679 1199 aa7.57□□□□□ -1.2
SMCHD1-204ENST00000581226 RSPO4Q2I0M5 234 aaPredicted RBP7.57□□□□□ -1.2
SMCHD1-204ENST00000581226 ZNF394Q53GI3 561 aa7.57□□□□□ -1.2
SMCHD1-204ENST00000581226 CLEC10AQ8IUN9 316 aa7.57□□□□□ -1.2
SMCHD1-204ENST00000581226 PLPPR2Q96GM1 343 aa7.57□□□□□ -1.2
SMCHD1-204ENST00000581226 SNCAIPQ9Y6H5 919 aa7.57□□□□□ -1.2
SMCHD1-204ENST00000581226 FAM95CA0A1B0GW59 222 aa7.56□□□□□ -1.2
SMCHD1-204ENST00000581226 BPNT1O95861 308 aa7.56□□□□□ -1.2
SMCHD1-204ENST00000581226 F13A1P00488 732 aa7.56□□□□□ -1.2
SMCHD1-204ENST00000581226 NFICP08651 508 aa7.56□□□□□ -1.2
SMCHD1-204ENST00000581226 HCLS1P14317 486 aaPredicted RBP7.56□□□□□ -1.2
SMCHD1-204ENST00000581226 NFKBIBQ15653 356 aa7.56□□□□□ -1.2
SMCHD1-204ENST00000581226 PPM1JQ5JR12 505 aa7.56□□□□□ -1.2
SMCHD1-204ENST00000581226 WIPI1Q5MNZ9 446 aaPredicted RBP7.56□□□□□ -1.2
SMCHD1-204ENST00000581226 FBXL19Q6PCT2 694 aa7.56□□□□□ -1.2
SMCHD1-204ENST00000581226 METTL16Q86W50 562 aaKnown RBP7.56□□□□□ -1.2
SMCHD1-204ENST00000581226 RNF214Q8ND24 703 aa7.56□□□□□ -1.2
SMCHD1-204ENST00000581226 ZNF296Q8WUU4 475 aaPredicted RBP7.56□□□□□ -1.2
SMCHD1-204ENST00000581226 GATAD2BQ8WXI9 593 aa7.56□□□□□ -1.2
SMCHD1-204ENST00000581226 FAM83CQ9BQN1 747 aa7.56□□□□□ -1.2
SMCHD1-204ENST00000581226 ACSS3Q9H6R3 686 aa7.56□□□□□ -1.2
SMCHD1-204ENST00000581226 SSU72Q9NP77 194 aaKnown RBP7.56□□□□□ -1.2
SMCHD1-204ENST00000581226 PCDHGB7Q9Y5F8 929 aa7.56□□□□□ -1.2
SMCHD1-204ENST00000581226 HMX2A2RU54 273 aa7.55□□□□□ -1.2
SMCHD1-204ENST00000581226 PRAMEF27A3QJZ7 478 aa7.55□□□□□ -1.2
SMCHD1-204ENST00000581226 GARTP22102 1010 aa7.55□□□□□ -1.2
SMCHD1-204ENST00000581226 RPL6Q02878 288 aaKnown RBP7.55□□□□□ -1.2
SMCHD1-204ENST00000581226 RING1Q06587 406 aa7.55□□□□□ -1.2
SMCHD1-204ENST00000581226 CYFIP1Q7L576 1253 aa7.55□□□□□ -1.2
SMCHD1-204ENST00000581226 NT5DC4Q86YG4 428 aa7.55□□□□□ -1.2
SMCHD1-204ENST00000581226 SMYD4Q8IYR2 804 aaPredicted RBP7.55□□□□□ -1.2
SMCHD1-204ENST00000581226 EZH1Q92800 747 aaPredicted RBP7.55□□□□□ -1.2
SMCHD1-204ENST00000581226 SEMA6CQ9H3T2 930 aa7.55□□□□□ -1.2
SMCHD1-204ENST00000581226 C7orf69Q9H7B7 122 aa7.55□□□□□ -1.2
SMCHD1-204ENST00000581226 LGR6Q9HBX8 967 aa7.55□□□□□ -1.2
SMCHD1-204ENST00000581226 ADAMTS1Q9UHI8 967 aa7.55□□□□□ -1.2
SMCHD1-204ENST00000581226 DAGLAQ9Y4D2 1042 aa7.55□□□□□ -1.2
SMCHD1-204ENST00000581226 SUPT16HQ9Y5B9 1047 aaKnown RBP7.55□□□□□ -1.2
SMCHD1-204ENST00000581226 FAM221AA4D161 298 aa7.54□□□□□ -1.2
SMCHD1-204ENST00000581226 GFRA2O00451 464 aa7.54□□□□□ -1.2
SMCHD1-204ENST00000581226 FANCGO15287 622 aa7.54□□□□□ -1.2
SMCHD1-204ENST00000581226 DYRK3O43781 588 aa7.54□□□□□ -1.2
SMCHD1-204ENST00000581226 CILPO75339 1184 aa7.54□□□□□ -1.2
SMCHD1-204ENST00000581226 NEFMP07197 916 aa7.54□□□□□ -1.2
SMCHD1-204ENST00000581226 TCF3P15923 654 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms