RNA–Protein interactions for RNA: ENST00000580670.6

CDK5RAP3-219, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 5

Gene CDK5RAP3, Length 1,768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-219ENST00000580670 ARPP21Q9UBL0 812 aaPredicted RBP16.41■□□□□ 0.22
CDK5RAP3-219ENST00000580670 DAXXQ9UER7 740 aaPredicted RBP16.41■□□□□ 0.22
CDK5RAP3-219ENST00000580670 GJA3Q9Y6H8 435 aa16.41■□□□□ 0.22
CDK5RAP3-219ENST00000580670 CDK5RAP2Q96SN8 1893 aa16.41■□□□□ 0.22
CDK5RAP3-219ENST00000580670 ZNF541Q9H0D2 1346 aa16.41■□□□□ 0.22
CDK5RAP3-219ENST00000580670 HMGB1P09429 215 aaKnown RBP16.41■□□□□ 0.22
CDK5RAP3-219ENST00000580670 RPS6KB1P23443 525 aa16.41■□□□□ 0.22
CDK5RAP3-219ENST00000580670 RPS12P25398 132 aaKnown RBP16.41■□□□□ 0.22
CDK5RAP3-219ENST00000580670 COL9A3Q14050 684 aaPredicted RBP16.41■□□□□ 0.22
CDK5RAP3-219ENST00000580670 FLT1P17948 1338 aa16.4■□□□□ 0.22
CDK5RAP3-219ENST00000580670 NAV1Q8NEY1 1877 aa16.4■□□□□ 0.22
CDK5RAP3-219ENST00000580670 SBK1Q52WX2 424 aa16.4■□□□□ 0.22
CDK5RAP3-219ENST00000580670 AKNAD1Q5T1N1 836 aa16.4■□□□□ 0.22
CDK5RAP3-219ENST00000580670 RALYLQ86SE5 291 aaKnown RBP16.4■□□□□ 0.22
CDK5RAP3-219ENST00000580670 NCOA7Q8NI08 942 aa16.4■□□□□ 0.22
CDK5RAP3-219ENST00000580670 TTC14Q96N46 770 aa16.4■□□□□ 0.22
CDK5RAP3-219ENST00000580670 RNF181Q9P0P0 153 aa16.4■□□□□ 0.22
CDK5RAP3-219ENST00000580670 ANAPC4Q9UJX5 808 aa16.4■□□□□ 0.22
CDK5RAP3-219ENST00000580670 WDHD1O75717 1129 aaPredicted RBP16.39■□□□□ 0.21
CDK5RAP3-219ENST00000580670 CYP2D6P10635 497 aa16.39■□□□□ 0.21
CDK5RAP3-219ENST00000580670 SLC4A3P48751 1232 aa16.39■□□□□ 0.21
CDK5RAP3-219ENST00000580670 TRDNQ13061 729 aa16.39■□□□□ 0.21
CDK5RAP3-219ENST00000580670 PICALMQ13492 652 aa16.39■□□□□ 0.21
CDK5RAP3-219ENST00000580670 DLGAP5Q15398 846 aa16.39■□□□□ 0.21
CDK5RAP3-219ENST00000580670 MFSD6Q6ZSS7 791 aa16.39■□□□□ 0.21
CDK5RAP3-219ENST00000580670 AMOTL1Q8IY63 956 aa16.39■□□□□ 0.21
CDK5RAP3-219ENST00000580670 STK11IPQ8N1F8 1099 aa16.39■□□□□ 0.21
CDK5RAP3-219ENST00000580670 STAG1Q8WVM7 1258 aa16.39■□□□□ 0.21
CDK5RAP3-219ENST00000580670 SAP30BPQ9UHR5 308 aaKnown RBP16.39■□□□□ 0.21
CDK5RAP3-219ENST00000580670 TIAM2Q8IVF5 1701 aa16.39■□□□□ 0.21
CDK5RAP3-219ENST00000580670 FOCADQ5VW36 1801 aa16.38■□□□□ 0.21
CDK5RAP3-219ENST00000580670 SPDYE2BA6NHP3 402 aa16.38■□□□□ 0.21
CDK5RAP3-219ENST00000580670 SMIM22K7EJ46 135 aa16.38■□□□□ 0.21
CDK5RAP3-219ENST00000580670 POLR3DP05423 398 aaPredicted RBP16.38■□□□□ 0.21
CDK5RAP3-219ENST00000580670 SPDYE6P0CI01 402 aa16.38■□□□□ 0.21
CDK5RAP3-219ENST00000580670 GMPSP49915 693 aaPredicted RBP16.38■□□□□ 0.21
CDK5RAP3-219ENST00000580670 SLC4A8Q2Y0W8 1093 aa16.38■□□□□ 0.21
CDK5RAP3-219ENST00000580670 DHX32Q7L7V1 743 aaKnown RBP16.38■□□□□ 0.21
CDK5RAP3-219ENST00000580670 PRMT6Q96LA8 375 aaPredicted RBP16.38■□□□□ 0.21
CDK5RAP3-219ENST00000580670 TCEANC2Q96MN5 208 aa16.38■□□□□ 0.21
CDK5RAP3-219ENST00000580670 RNF41Q9H4P4 317 aaPredicted RBP16.38■□□□□ 0.21
CDK5RAP3-219ENST00000580670 INCENPQ9NQS7 918 aa16.38■□□□□ 0.21
CDK5RAP3-219ENST00000580670 LAMB1P07942 1786 aa16.38■□□□□ 0.21
CDK5RAP3-219ENST00000580670 NEDD4P46934 1319 aa16.38■□□□□ 0.21
CDK5RAP3-219ENST00000580670 ECM29Q5VYK3 1845 aa16.38■□□□□ 0.21
CDK5RAP3-219ENST00000580670 K7ELQ4 463 aaPredicted RBP16.38■□□□□ 0.21
CDK5RAP3-219ENST00000580670 MCM2P49736 904 aa16.38■□□□□ 0.21
CDK5RAP3-219ENST00000580670 AK2P54819 239 aa16.38■□□□□ 0.21
CDK5RAP3-219ENST00000580670 C12orf60Q5U649 245 aa16.38■□□□□ 0.21
CDK5RAP3-219ENST00000580670 C9orf131Q5VYM1 1079 aa16.38■□□□□ 0.21
CDK5RAP3-219ENST00000580670 NOL8Q76FK4 1167 aaKnown RBP16.38■□□□□ 0.21
CDK5RAP3-219ENST00000580670 TDRD3Q9H7E2 651 aaKnown RBP16.38■□□□□ 0.21
CDK5RAP3-219ENST00000580670 DDX4Q9NQI0 724 aaKnown RBP16.38■□□□□ 0.21
CDK5RAP3-219ENST00000580670 TACC3Q9Y6A5 838 aa16.38■□□□□ 0.21
CDK5RAP3-219ENST00000580670 SHTN1A0MZ66 631 aa16.37■□□□□ 0.21
CDK5RAP3-219ENST00000580670 SLC3A2P08195 630 aaKnown RBP16.37■□□□□ 0.21
CDK5RAP3-219ENST00000580670 MMP14P50281 582 aa16.37■□□□□ 0.21
CDK5RAP3-219ENST00000580670 CACNB3P54284 484 aa16.37■□□□□ 0.21
CDK5RAP3-219ENST00000580670 EVX2Q03828 476 aa16.37■□□□□ 0.21
CDK5RAP3-219ENST00000580670 MB21D2Q8IYB1 491 aaPredicted RBP16.37■□□□□ 0.21
CDK5RAP3-219ENST00000580670 DPF2Q92785 391 aa16.37■□□□□ 0.21
CDK5RAP3-219ENST00000580670 CNNM2Q9H8M5 875 aa16.37■□□□□ 0.21
CDK5RAP3-219ENST00000580670 TOMM22Q9NS69 142 aa16.37■□□□□ 0.21
CDK5RAP3-219ENST00000580670 B4E1Z4 1266 aa16.36■□□□□ 0.21
CDK5RAP3-219ENST00000580670 GRIN3BO60391 1043 aa16.36■□□□□ 0.21
CDK5RAP3-219ENST00000580670 ZNF280AP59817 542 aaPredicted RBP16.36■□□□□ 0.21
CDK5RAP3-219ENST00000580670 EXOSC10Q01780 885 aaKnown RBP16.36■□□□□ 0.21
CDK5RAP3-219ENST00000580670 NFIAQ12857 509 aa16.36■□□□□ 0.21
CDK5RAP3-219ENST00000580670 MICALL2Q8IY33 904 aa16.36■□□□□ 0.21
CDK5RAP3-219ENST00000580670 MTMR14Q8NCE2 650 aa16.36■□□□□ 0.21
CDK5RAP3-219ENST00000580670 KRT23Q9C075 422 aa16.36■□□□□ 0.21
CDK5RAP3-219ENST00000580670 MYOZ2Q9NPC6 264 aa16.36■□□□□ 0.21
CDK5RAP3-219ENST00000580670 MYH1P12882 1939 aa16.36■□□□□ 0.21
CDK5RAP3-219ENST00000580670 DDX60LQ5H9U9 1706 aaKnown RBP16.36■□□□□ 0.21
CDK5RAP3-219ENST00000580670 MCM5P33992 734 aa16.36■□□□□ 0.21
CDK5RAP3-219ENST00000580670 RRP12Q5JTH9 1297 aaKnown RBP16.36■□□□□ 0.21
CDK5RAP3-219ENST00000580670 CHST3Q7LGC8 479 aa16.36■□□□□ 0.21
CDK5RAP3-219ENST00000580670 GPC2Q8N158 579 aa16.36■□□□□ 0.21
CDK5RAP3-219ENST00000580670 IDI2Q9BXS1 227 aa16.36■□□□□ 0.21
CDK5RAP3-219ENST00000580670 LRRC2Q9BYS8 371 aa16.36■□□□□ 0.21
CDK5RAP3-219ENST00000580670 OSBPL5Q9H0X9 879 aaPredicted RBP16.36■□□□□ 0.21
CDK5RAP3-219ENST00000580670 ALDH8A1Q9H2A2 487 aaPredicted RBP16.36■□□□□ 0.21
CDK5RAP3-219ENST00000580670 TMOD2Q9NZR1 351 aa16.36■□□□□ 0.21
CDK5RAP3-219ENST00000580670 CNOT7Q9UIV1 285 aaKnown RBP16.36■□□□□ 0.21
CDK5RAP3-219ENST00000580670 PRC1O43663 620 aa16.35■□□□□ 0.21
CDK5RAP3-219ENST00000580670 PCP11498 1178 aaKnown RBP16.35■□□□□ 0.21
CDK5RAP3-219ENST00000580670 PLCD1P51178 756 aa16.35■□□□□ 0.21
CDK5RAP3-219ENST00000580670 FGD1P98174 961 aa16.35■□□□□ 0.21
CDK5RAP3-219ENST00000580670 Q6ZUG5 572 aa16.35■□□□□ 0.21
CDK5RAP3-219ENST00000580670 LARP6Q9BRS8 491 aaKnown RBP16.35■□□□□ 0.21
CDK5RAP3-219ENST00000580670 KDM4AO75164 1064 aa16.34■□□□□ 0.21
CDK5RAP3-219ENST00000580670 PDE4BQ07343 736 aa16.34■□□□□ 0.21
CDK5RAP3-219ENST00000580670 TCP10Q12799 353 aa16.34■□□□□ 0.21
CDK5RAP3-219ENST00000580670 ANKRD1Q15327 319 aa16.34■□□□□ 0.21
CDK5RAP3-219ENST00000580670 NKX2-3Q8TAU0 364 aa16.34■□□□□ 0.21
CDK5RAP3-219ENST00000580670 DYNLL2Q96FJ2 89 aa16.34■□□□□ 0.21
CDK5RAP3-219ENST00000580670 ZBED3Q96IU2 234 aaPredicted RBP16.34■□□□□ 0.21
CDK5RAP3-219ENST00000580670 ZNF70Q9UC06 446 aaPredicted RBP16.34■□□□□ 0.21
CDK5RAP3-219ENST00000580670 FAM198AQ9UFP1 575 aa16.34■□□□□ 0.21
CDK5RAP3-219ENST00000580670 LIMCH1Q9UPQ0 1083 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms