RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.06□□□□□ -0.96
NUP88-213ENST00000576862 TRIM42Q8IWZ5 723 aa9.06□□□□□ -0.96
NUP88-213ENST00000576862 ZNF428Q96B54 188 aa9.06□□□□□ -0.96
NUP88-213ENST00000576862 COPRSQ9NQ92 184 aa9.06□□□□□ -0.96
NUP88-213ENST00000576862 PCDHA4Q9UN74 947 aa9.06□□□□□ -0.96
NUP88-213ENST00000576862 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP9.05□□□□□ -0.96
NUP88-213ENST00000576862 RING1Q06587 406 aa9.05□□□□□ -0.96
NUP88-213ENST00000576862 INPP5AQ14642 412 aa9.05□□□□□ -0.96
NUP88-213ENST00000576862 TSNAXIP1Q2TAA8 658 aa9.05□□□□□ -0.96
NUP88-213ENST00000576862 RHOVQ96L33 236 aa9.05□□□□□ -0.96
NUP88-213ENST00000576862 ATXN3LQ9H3M9 355 aa9.05□□□□□ -0.96
NUP88-213ENST00000576862 SEMA6CQ9H3T2 930 aa9.05□□□□□ -0.96
NUP88-213ENST00000576862 DCDC2CA8MYV0 355 aa9.04□□□□□ -0.96
NUP88-213ENST00000576862 RAB6AP20340 208 aa9.04□□□□□ -0.96
NUP88-213ENST00000576862 CDK8P49336 464 aa9.04□□□□□ -0.96
NUP88-213ENST00000576862 ERVK-24P63145 666 aa9.04□□□□□ -0.96
NUP88-213ENST00000576862 PRSS36Q5K4E3 855 aa9.04□□□□□ -0.96
NUP88-213ENST00000576862 TMEM74Q96NL1 305 aa9.04□□□□□ -0.96
NUP88-213ENST00000576862 KBTBD4Q9NVX7 518 aa9.04□□□□□ -0.96
NUP88-213ENST00000576862 CSADQ9Y600 493 aa9.04□□□□□ -0.96
NUP88-213ENST00000576862 FAM95CA0A1B0GW59 222 aa9.03□□□□□ -0.96
NUP88-213ENST00000576862 NEFMP07197 916 aa9.03□□□□□ -0.96
NUP88-213ENST00000576862 NFICP08651 508 aa9.03□□□□□ -0.96
NUP88-213ENST00000576862 FSTP19883 344 aa9.03□□□□□ -0.96
NUP88-213ENST00000576862 RXRBP28702 533 aa9.03□□□□□ -0.96
NUP88-213ENST00000576862 NTF4P34130 210 aa9.03□□□□□ -0.96
NUP88-213ENST00000576862 FANCCQ00597 558 aa9.03□□□□□ -0.96
NUP88-213ENST00000576862 TTLL4Q14679 1199 aa9.03□□□□□ -0.96
NUP88-213ENST00000576862 LRFN4Q6PJG9 635 aa9.03□□□□□ -0.96
NUP88-213ENST00000576862 C12orf40Q86WS4 652 aa9.03□□□□□ -0.96
NUP88-213ENST00000576862 RELL1Q8IUW5 271 aa9.03□□□□□ -0.96
NUP88-213ENST00000576862 PF4P02776 101 aa9.02□□□□□ -0.97
NUP88-213ENST00000576862 GBP2P32456 591 aaPredicted RBP9.02□□□□□ -0.97
NUP88-213ENST00000576862 LMNB2Q03252 620 aa9.02□□□□□ -0.97
NUP88-213ENST00000576862 CAMK2GQ13555 558 aaPredicted RBP9.02□□□□□ -0.97
NUP88-213ENST00000576862 SEZ6L2Q6UXD5 910 aa9.02□□□□□ -0.97
NUP88-213ENST00000576862 PLPPR2Q96GM1 343 aa9.02□□□□□ -0.97
NUP88-213ENST00000576862 MIR1-1HGQ9H1L0 117 aa9.02□□□□□ -0.97
NUP88-213ENST00000576862 GGT7Q9UJ14 662 aa9.02□□□□□ -0.97
NUP88-213ENST00000576862 DYNC1LI2O43237 492 aaPredicted RBP9.01□□□□□ -0.97
NUP88-213ENST00000576862 HCLS1P14317 486 aaPredicted RBP9.01□□□□□ -0.97
NUP88-213ENST00000576862 LMNB1P20700 586 aa9.01□□□□□ -0.97
NUP88-213ENST00000576862 NFKBIBQ15653 356 aa9.01□□□□□ -0.97
NUP88-213ENST00000576862 PPM1JQ5JR12 505 aa9.01□□□□□ -0.97
NUP88-213ENST00000576862 RNF43Q68DV7 783 aa9.01□□□□□ -0.97
NUP88-213ENST00000576862 CYFIP1Q7L576 1253 aa9.01□□□□□ -0.97
NUP88-213ENST00000576862 HS2ST1Q7LGA3 356 aa9.01□□□□□ -0.97
NUP88-213ENST00000576862 RNF214Q8ND24 703 aa9.01□□□□□ -0.97
NUP88-213ENST00000576862 YIPF2Q9BWQ6 316 aa9.01□□□□□ -0.97
NUP88-213ENST00000576862 MINDY4BA8MYZ0 360 aa9□□□□□ -0.97
NUP88-213ENST00000576862 GFRA2O00451 464 aa9□□□□□ -0.97
NUP88-213ENST00000576862 IGLV1-40P01703 118 aa9□□□□□ -0.97
NUP88-213ENST00000576862 GARTP22102 1010 aa9□□□□□ -0.97
NUP88-213ENST00000576862 NFIAQ12857 509 aa9□□□□□ -0.97
NUP88-213ENST00000576862 PWP1Q13610 501 aa9□□□□□ -0.97
NUP88-213ENST00000576862 BNC2Q6ZN30 1099 aaPredicted RBP9□□□□□ -0.97
NUP88-213ENST00000576862 SMYD4Q8IYR2 804 aaPredicted RBP9□□□□□ -0.97
NUP88-213ENST00000576862 SHISA5Q8N114 240 aa9□□□□□ -0.97
NUP88-213ENST00000576862 JARID2Q92833 1246 aaPredicted RBP9□□□□□ -0.97
NUP88-213ENST00000576862 ISL2Q96A47 359 aa9□□□□□ -0.97
NUP88-213ENST00000576862 PIDD1Q9HB75 910 aa9□□□□□ -0.97
NUP88-213ENST00000576862 METTL5Q9NRN9 209 aaKnown RBP9□□□□□ -0.97
NUP88-213ENST00000576862 DAGLAQ9Y4D2 1042 aa9□□□□□ -0.97
NUP88-213ENST00000576862 FAM221AA4D161 298 aa8.99□□□□□ -0.97
NUP88-213ENST00000576862 ZNF76P36508 570 aa8.99□□□□□ -0.97
NUP88-213ENST00000576862 FAM160A1Q05DH4 1040 aa8.99□□□□□ -0.97
NUP88-213ENST00000576862 MAP7Q14244 749 aa8.99□□□□□ -0.97
NUP88-213ENST00000576862 WIPI1Q5MNZ9 446 aaPredicted RBP8.99□□□□□ -0.97
NUP88-213ENST00000576862 PAOXQ6QHF9 649 aa8.99□□□□□ -0.97
NUP88-213ENST00000576862 CCDC84Q86UT8 332 aaPredicted RBP8.99□□□□□ -0.97
NUP88-213ENST00000576862 ELMO3Q96BJ8 720 aa8.99□□□□□ -0.97
NUP88-213ENST00000576862 C1GALT1Q9NS00 363 aa8.99□□□□□ -0.97
NUP88-213ENST00000576862 PRKAG2Q9UGJ0 569 aa8.99□□□□□ -0.97
NUP88-213ENST00000576862 SNCAIPQ9Y6H5 919 aa8.99□□□□□ -0.97
NUP88-213ENST00000576862 F13A1P00488 732 aa8.98□□□□□ -0.97
NUP88-213ENST00000576862 ADMP35318 185 aa8.98□□□□□ -0.97
NUP88-213ENST00000576862 ZBTB37Q5TC79 503 aa8.98□□□□□ -0.97
NUP88-213ENST00000576862 UBE3DQ7Z6J8 389 aa8.98□□□□□ -0.97
NUP88-213ENST00000576862 GATA6Q92908 595 aa8.98□□□□□ -0.97
NUP88-213ENST00000576862 DBNDD2Q9BQY9 259 aa8.98□□□□□ -0.97
NUP88-213ENST00000576862 LGR6Q9HBX8 967 aa8.98□□□□□ -0.97
NUP88-213ENST00000576862 KCNQ5Q9NR82 932 aa8.98□□□□□ -0.97
NUP88-213ENST00000576862 SCAMP3O14828 347 aaKnown RBP8.97□□□□□ -0.97
NUP88-213ENST00000576862 FANCGO15287 622 aa8.97□□□□□ -0.97
NUP88-213ENST00000576862 RNGTTO60942 597 aaKnown RBP8.97□□□□□ -0.97
NUP88-213ENST00000576862 CILPO75339 1184 aa8.97□□□□□ -0.97
NUP88-213ENST00000576862 FBXL19Q6PCT2 694 aa8.97□□□□□ -0.97
NUP88-213ENST00000576862 HDXQ7Z353 690 aa8.97□□□□□ -0.97
NUP88-213ENST00000576862 SLC51AQ86UW1 340 aa8.97□□□□□ -0.97
NUP88-213ENST00000576862 GATAD2BQ8WXI9 593 aa8.97□□□□□ -0.97
NUP88-213ENST00000576862 MFSD14AQ96MC6 490 aa8.97□□□□□ -0.97
NUP88-213ENST00000576862 PRAMEF27A3QJZ7 478 aa8.96□□□□□ -0.98
NUP88-213ENST00000576862 GSC2O15499 205 aa8.96□□□□□ -0.98
NUP88-213ENST00000576862 RPL6Q02878 288 aaKnown RBP8.96□□□□□ -0.98
NUP88-213ENST00000576862 METTL16Q86W50 562 aaKnown RBP8.96□□□□□ -0.98
NUP88-213ENST00000576862 GOLM1Q8NBJ4 401 aa8.96□□□□□ -0.98
NUP88-213ENST00000576862 RNF34Q969K3 372 aa8.96□□□□□ -0.98
NUP88-213ENST00000576862 ADAMTS1Q9UHI8 967 aa8.96□□□□□ -0.98
NUP88-213ENST00000576862 PCOLCE2Q9UKZ9 415 aa8.96□□□□□ -0.98
NUP88-213ENST00000576862 GREM1O60565 184 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms